# TF - NsrR: HNE_1541
>HNE_1540(PF01152) Score=6.4 Pos=-113 [Hyphomonas neptunium ATCC 15444]
TCGGTATTTACAATACCTA
>HNE_1541(nsrR) Score=6.4 Pos=-40 [Hyphomonas neptunium ATCC 15444]
TAGGTATTGTAAATACCGA
# TF - NadQ: HNE_0854
>HNE_2577(nadE) Score=5.1 Pos=-2 [Hyphomonas neptunium ATCC 15444]
AAATGCTCATCATGAGCAATA
>HNE_0692(nadA) Score=6.4 Pos=-182 [Hyphomonas neptunium ATCC 15444]
TTATACTCAAATCGAGCATAA
# TF - NrdR: HNE_2059
>HNE_0373(nrdB) Score=5.4 Pos=-80 [Hyphomonas neptunium ATCC 15444]
GCACTATATGTGGTGT
>HNE_0869(nrdA) Score=5.4 Pos=-182 [Hyphomonas neptunium ATCC 15444]
ACACTATATCTTGTGT
# TF - SahR: HNE_2104
>HNE_2104(sahR) Score=5 Pos=-27 [Hyphomonas neptunium ATCC 15444]
ATATAAAAGTTCGTTTATAT
# TF - Zur: HNE_0655
>HNE_1973(omr) Score=5.4 Pos=-44 [Hyphomonas neptunium ATCC 15444]
GTAATGCAATATTATTACATTAC
# TF - HutC: HNE_2393
>HNE_2394(hutF) Score=6.2 Pos=-40 [Hyphomonas neptunium ATCC 15444]
AATATGTATAGACATAAT
>HNE_2395(hutI) Score=6.2 Pos=-55 [Hyphomonas neptunium ATCC 15444]
ATTATGTCTATACATATT
# TF - NtrC: HNE_2011
>HNE_2013(nifR3) Score=4.5 Pos=-10 [Hyphomonas neptunium ATCC 15444]
TGCCCATGATTTGTGCG
>HNE_2083(glnB) Score=4.5 Pos=-145 [Hyphomonas neptunium ATCC 15444]
CGCCCAATCTTTAATCA
>HNE_2083(glnB) Score=4.1 Pos=-124 [Hyphomonas neptunium ATCC 15444]
TGCACAATCTTTAATCT
# TF - LexA: HNE_1786
>HNE_2938(uvrD) Score=-0.9 Pos=-138 [Hyphomonas neptunium ATCC 15444]
GAAAAAAGCGCAAAC
>HNE_2464(imuA) Score=1.2 Pos=-17 [Hyphomonas neptunium ATCC 15444]
GAACAAAATAAGAAC
>HNE_2765(uvrA) Score=5.3 Pos=-95 [Hyphomonas neptunium ATCC 15444]
GTTCACATTTTGTTC
>HNE_1903(PF04055) Score=5.3 Pos=-100 [Hyphomonas neptunium ATCC 15444]
GTTCTTGCTTTGTTC
>HNE_2742(recA) Score=4.6 Pos=-128 [Hyphomonas neptunium ATCC 15444]
GTTTCTGCTTTGTTC
>HNE_0511(rmuC) Score=4.6 Pos=-41 [Hyphomonas neptunium ATCC 15444]
GTTCCGATTATGTTC
>HNE_0720(radA) Score=4.3 Pos=-294 [Hyphomonas neptunium ATCC 15444]
GTCCATTTTTCGTTC
# TF - LiuR: HNE_0667
>HNE_0667(liuR) Score=5.1 Pos=-83 [Hyphomonas neptunium ATCC 15444]
GTTGACGTGCGCGGAAAG
>HNE_0669(acdL) Score=5.8 Pos=-56 [Hyphomonas neptunium ATCC 15444]
GCTTACGTGAACGTAAGC
>HNE_0669(acdL) Score=4.6 Pos=-50 [Hyphomonas neptunium ATCC 15444]
GTGAACGTAAGCGGCAAC
>HNE_2094(acdL2) Score=5.4 Pos=-95 [Hyphomonas neptunium ATCC 15444]
GTTTACGTGCGCGTCACC
>HNE_2706(acdA2) Score=5.4 Pos=-88 [Hyphomonas neptunium ATCC 15444]
GTTTACGTCAACGGAAGG
>HNE_2820 Score=5.2 Pos=-64 [Hyphomonas neptunium ATCC 15444]
GTTGACGTGAACGTCTGG
>HNE_3471(eftB) Score=5 Pos=-98 [Hyphomonas neptunium ATCC 15444]
CCTCACGTAAGCGTCAAG
# TF - Fur: HNE_0528
>HNE_2174(omp1) Score=4.8 Pos=-54 [Hyphomonas neptunium ATCC 15444]
ATTGCAAATGAGTTGCAAT
>HNE_3075(bfd) Score=4.5 Pos=-18 [Hyphomonas neptunium ATCC 15444]
ATTGACACTCATTCGCAAG
>HNE_3320 Score=4.9 Pos=-58 [Hyphomonas neptunium ATCC 15444]
TTTGAAAATCATTCTCAAG
>HNE_2693(fbpA) Score=4.7 Pos=-57 [Hyphomonas neptunium ATCC 15444]
CTTGCGATTCATTCTCAAA
>HNE_1742(nuoA) Score=3.9 Pos=-186 [Hyphomonas neptunium ATCC 15444]
GTTGCGAATTAATCGCAAA
>HNE_2116(omp4) Score=4.8 Pos=-129 [Hyphomonas neptunium ATCC 15444]
ATTGCAAACCATTCTCAAG
>HNE_2116(omp4) Score=4.5 Pos=-154 [Hyphomonas neptunium ATCC 15444]
AATGTAAATCATTCGCAAT
>HNE_1653(omp2) Score=4 Pos=-87 [Hyphomonas neptunium ATCC 15444]
ATTGAGAATGATAATCATT
>HNE_1653(omp2) Score=4.7 Pos=-33 [Hyphomonas neptunium ATCC 15444]
ACTGAGAATAATTCGCAAT
>HNE_1625(piuC) Score=5 Pos=-68 [Hyphomonas neptunium ATCC 15444]
TTTGAGAATGAGTTGCAGT
# RNA - mini-ykkC
>HNE_2609(ykkC) Score=32.7 Pos=-62 [Hyphomonas neptunium ATCC 15444]
CAGGAGGACGGCCTCCCCCATATCGGGAACGCTTCGGGACGGCCCGTTT
# RNA - Cobalamin
>HNE_1142(btuB) Score=112.1 Pos=-248 [Hyphomonas neptunium ATCC 15444]
CGCCGCCTCACGCAACAGGTGCCCGGATCATGGTCCGGGTGAAAAGGGAAGCCGGTGAGAATCCGGCGCTATGCCCGTAACTGTGAGCGGGGAGCCGTGTGAGCCATACGCCACTGGGAAACCGGGAAGGCAGCTCTCTCCGGCGATGATCCGCGAAGTCAGGAGACCTGCCTGTTGCCGTCGTTGGCTCGC
>HNE_1514(btuB) Score=140.2 Pos=-355 [Hyphomonas neptunium ATCC 15444]
CATCAACCCCATCAGATGGTGCTCCCCTGACAGGGAGCTAAGAGGGAAGCCGGTGTAAATCCGGCGCTGTACCCGCAACTGTTAGCCGGGAGCTGATGGCCACTATGCCACTGGAACGCGAGTTCTGGGAAGGCGGCCAAAGGCGACGATCGGTGAGCCAGGAGACCTGCCATCGCGTCGTTTGTCCGGAG
# RNA - yybP-ykoY
>HNE_1628(COG2119) Score=43.3 Pos=-193 [Hyphomonas neptunium ATCC 15444]
GCGCCGGGTCATCTGGGGAGTAGCCAGCCGCCGAAAGGCGGGTTTCCGTGTCAACATGCTTGGTCGAGAGGCCATGGTGCGGAAGGAGCGGTCATACCGTTCGGGCGAGACCAATGACGTCGCT
# RNA - serC
>HNE_3128(serC) Score=45.8 Pos=-61 [Hyphomonas neptunium ATCC 15444]
GCGGCGGGCCAGGCGCCCCCAACGGCGCCCAGCCTATCTGTGAGGATAGGAGTA
# RNA - SAM_alpha
>HNE_3283(metA) Score=82.3 Pos=-162 [Hyphomonas neptunium ATCC 15444]
AATCCTCGTCCGTGGTGATTTGGCCGGCCGGCTTGCAGCCACGTTAAACAAGTCGCTAAAGGGCCGAGATGCAGGAAAC
# RNA - MOCO_RNA_motif
>HNE_1557(moaA) Score=79.4 Pos=-118 [Hyphomonas neptunium ATCC 15444]
TTGGAAATTCGCTCCGAGCCGTTCCGCCTAAAGCGCCGTTTCCCGGTGTCATGGCGGCCCGGCCGAGGGTGGCAGTTGGAAACCCTGCCGCCTCCCGTGCTTGGAAAGGAGCCATGCGATGACACATCC
# RNA - TPP
>HNE_3337(PF08818) Score=63.5 Pos=-93 [Hyphomonas neptunium ATCC 15444]
GCATATCCGAGGGGTGTCCGGCATGGGGCCGGGCTGAGAGTTACCCTTTGAACCTGATCCGGGTCATGCCGGCGCGAGGGACGGAGAATAACTATGGCCC
# RNA - Glycine
>HNE_2719(gcvT) Score=50.4 Pos=-150 [Hyphomonas neptunium ATCC 15444]
ATCAACACGCTGGAAAGAGGCTGAAACACGCCTCGCCGAAGGAGCAAGCCTGTCTTTGACGGGCGGAATCTCTCAGGCGCCCGGACAGCGGGGGCGACGG
>HNE_2719(gcvT) Score=60.6 Pos=-238 [Hyphomonas neptunium ATCC 15444]
ATTCTCTTCCGGGAGAGAGCGGCATTCGGTAGCCGCCGCCGAAGGCGCAACCGCCCCGGAAACGCTCAGGCAAAAGGGCCGGAAGAGGA
# TF - HrcA: HNE_3317
>HNE_1961(groS) Score=7.4 Pos=-110 [Hyphomonas neptunium ATCC 15444]
TTAGCAGTCGGCTCGGGCGAGTGCTAA
# TF - SoxR: HNE_3426
>HNE_3426(soxR) Score=6.2 Pos=-35 [Hyphomonas neptunium ATCC 15444]
ATCTCAAGTTCACTTTAGAT
>HNE_3425(PF00903) Score=6.2 Pos=-66 [Hyphomonas neptunium ATCC 15444]
ATCTAAAGTGAACTTGAGAT
# TF - MerR: HNE_1380
>HNE_1381(grxC) Score=6.3 Pos=-73 [Hyphomonas neptunium ATCC 15444]
ATTCCGTACTATGGTACGGAAC
# TF - CadR-PbrR: HNE_1726
>HNE_1727(czcD) Score=5.9 Pos=-53 [Hyphomonas neptunium ATCC 15444]
ATCCTCTAGTTACTTGAGGAT