# TF - SdhR: Ajs_2792
>Ajs_2401(aceA) Score=6.9 Pos=-115 [Acidovorax sp. JS42]
ATTTATCTCTTATATAAGACATAAGA
>Ajs_2791(mdh) Score=7.2 Pos=-91 [Acidovorax sp. JS42]
GATCATATCTTATATAAGACATAAGA
>Ajs_2792(sdhR) Score=7.2 Pos=-4 [Acidovorax sp. JS42]
TCTTATGTCTTATATAAGATATGATC
# TF - NsrR: Ajs_3163
>Ajs_3163(nsrR) Score=5.4 Pos=-64 [Acidovorax sp. JS42]
GATGAATATTTTATTCATT
>Ajs_3164(dnrN) Score=5.4 Pos=-44 [Acidovorax sp. JS42]
AATGAATAAAATATTCATC
>Ajs_2847(nnrS) Score=4.2 Pos=-49 [Acidovorax sp. JS42]
TATTCATGTAAAATGAATC
# TF - HexR: Ajs_0694
>Ajs_0695(zwf) Score=5.3 Pos=-93 [Acidovorax sp. JS42]
ATGAAACTCGATAACAT
>Ajs_3956(pykA) Score=5.4 Pos=-38 [Acidovorax sp. JS42]
TCGAAACTCGATTACAT
# TF - NrdR: Ajs_1659
>Ajs_0087(nrdD) Score=5.4 Pos=-61 [Acidovorax sp. JS42]
AAACTACCTATAGTGT
>Ajs_0087(nrdD) Score=5.8 Pos=-29 [Acidovorax sp. JS42]
ACACTATATGTAGTGT
>Ajs_3632(nrdA) Score=5.9 Pos=-103 [Acidovorax sp. JS42]
ACACTAGATATAGTGT
>Ajs_3632(nrdA) Score=5.3 Pos=-135 [Acidovorax sp. JS42]
ACACTACCCCTAGTGT
# TF - NorR: Ajs_1896, Ajs_0093
>Ajs_0093(norR2) Score=4.9 Pos=-21 [Acidovorax sp. JS42]
TAAGGTAAAAATTACCTTT
>Ajs_0093(norR2) Score=5.2 Pos=-1 [Acidovorax sp. JS42]
AATGGTAGTTATGACCATA
>Ajs_0092(norB) Score=5.2 Pos=-155 [Acidovorax sp. JS42]
TATGGTCATAACTACCATT
>Ajs_0092(norB) Score=4.9 Pos=-135 [Acidovorax sp. JS42]
AAAGGTAATTTTTACCTTA
>Ajs_0092(norB) Score=3.9 Pos=-110 [Acidovorax sp. JS42]
TACGGTTCATTTTACCCAT
>Ajs_1895(hmp) Score=3.8 Pos=-114 [Acidovorax sp. JS42]
AAGAGTCTTTTTGACTACT
# TF - IscR: Ajs_2145
>Ajs_2145(iscR) Score=5.6 Pos=-189 [Acidovorax sp. JS42]
TTACCCGATAAAATTAATAGGGATT
>Ajs_2145(iscR) Score=5.8 Pos=-158 [Acidovorax sp. JS42]
ATACTTGTCTCAAATACTCAAGAAA
# TF - NtrC: Ajs_1192
>Ajs_1189(glnA) Score=5.1 Pos=-134 [Acidovorax sp. JS42]
TGCACGCGTTTGGTGCG
>Ajs_1189(glnA) Score=5.7 Pos=-206 [Acidovorax sp. JS42]
TGCACCAAACGGGTGCA
>Ajs_0162(CHP02001) Score=5 Pos=-155 [Acidovorax sp. JS42]
TGCACCAGGCTGGTGCG
>Ajs_2839(nasD) Score=4.5 Pos=-328 [Acidovorax sp. JS42]
TGCACCACGGCGGTGCG
>Ajs_2842(ybiB) Score=4.6 Pos=-120 [Acidovorax sp. JS42]
GGCACCACTGCGGTGCA
>Ajs_2831(nrtA) Score=5 Pos=-314 [Acidovorax sp. JS42]
TGCACAAATGCGGTGCA
# TF - ModE: Ajs_3123
>Ajs_3123(modE) Score=7.3 Pos=-13 [Acidovorax sp. JS42]
CGCTATTCCATTGATGAATAGCG
>Ajs_3124(modA) Score=7 Pos=-34 [Acidovorax sp. JS42]
CGCTATTCATCAATGGAATAGCG
# TF - LexA: Ajs_2310
>Ajs_2310(lexA) Score=5.8 Pos=-54 [Acidovorax sp. JS42]
TACTGGATTAAAAAACAGTA
>Ajs_2310(lexA) Score=5.5 Pos=-73 [Acidovorax sp. JS42]
AACTGTTCAAAAATACAGAT
>Ajs_2429(PF08774) Score=4.9 Pos=-75 [Acidovorax sp. JS42]
TGCTGGATGAAATCACAGTA
>Ajs_1965(imuA) Score=4.9 Pos=-85 [Acidovorax sp. JS42]
TGCTGGATGAAATCACAGTA
>Ajs_2803(PF04055) Score=4.9 Pos=-23 [Acidovorax sp. JS42]
TGCTGGATGAAATCACAGTA
>Ajs_1014(parE) Score=4.5 Pos=-35 [Acidovorax sp. JS42]
TCCTGGTTTTATATCCAGCA
>Ajs_4001(recA) Score=4.3 Pos=-87 [Acidovorax sp. JS42]
TACTGTTCAAGCATCCAGCC
# TF - LiuR: Ajs_3780
>Ajs_3780(liuR) Score=6 Pos=-59 [Acidovorax sp. JS42]
ATTGACGTTCACGTCAAC
>Ajs_3779(liuA) Score=6.6 Pos=-134 [Acidovorax sp. JS42]
ATTGACGTTTACGTAAAC
>Ajs_3779(liuA) Score=4.8 Pos=-128 [Acidovorax sp. JS42]
GTTTACGTAAACGTAATA
>Ajs_2810(etfB) Score=5.1 Pos=-45 [Acidovorax sp. JS42]
GTTTACGTAAACGTCAAG
>Ajs_1606(paaH) Score=5.3 Pos=-31 [Acidovorax sp. JS42]
GTTTACGTTAACGTAACT
>Ajs_1606(paaH) Score=6.1 Pos=-37 [Acidovorax sp. JS42]
ATTAACGTTTACGTTAAC
# TF - FadP: Ajs_0591
>Ajs_2810(etfB) Score=5.3 Pos=-122 [Acidovorax sp. JS42]
AAGCACGATCGTTCGT
>Ajs_1950(etfD) Score=4.9 Pos=-117 [Acidovorax sp. JS42]
GTGAACGACCGTGCGA
>Ajs_0591(fadP) Score=5.7 Pos=-29 [Acidovorax sp. JS42]
TAGAACGATCGTTCGT
>Ajs_0365 Score=5.3 Pos=-31 [Acidovorax sp. JS42]
ACGAACGATCGTTCTT
>Ajs_3393(acdQ) Score=4.7 Pos=-43 [Acidovorax sp. JS42]
AAGCACGCCCGTGCTA
# RNA - FMN
>Ajs_2261(ribB) Score=72 Pos=-319 [Acidovorax sp. JS42]
GGCAGGTCTTCAGGGCGGGGTGGAATTCCCCACCGGCGGTAGGCGGCGCATGGAGGTTTTCTTGCACCGCGAGCCCGCGAGCGCCCCGGTTGCCATCAGTGCAACCGGGGGTCAGCAGACCCGGTGCGGGGCGGCGCAGGCCACTCCCAGTCCGGGGCCGACGGTCATAGTCCGGATGAAAGAAGACGTGC
# RNA - TPP
>Ajs_3661(thiC) Score=54.8 Pos=-212 [Acidovorax sp. JS42]
CGGCCCCGCTCCGGGGTGCACGTAACGGCGTGCTGAGATGGCGGACCTGACCGCCGGAACCGCGAACTTGATCTGGTTCATGCCAGCGTAAGAAGAGCTGCAGTCGGATAG
>Ajs_1786(thiO) Score=53.3 Pos=-184 [Acidovorax sp. JS42]
ACGGACGAAACAGGGGTGTCCCCGCCGCACTAAGAACGTGTTGACGAAAGCGGCAGGCGACTGAGAAATACCCTAAGCACCCGATCCAGGTCATGCTGGCGTGGGGAGTTTCAACAGCATCGGC
# TF - HrcA: Ajs_0905
>Ajs_0700(groS) Score=7.2 Pos=-112 [Acidovorax sp. JS42]
TTAGCACTCGAAACAGATGAGTGCTAA
>Ajs_3522(rpoH) Score=7 Pos=-28 [Acidovorax sp. JS42]
TTAGCACTCTCTCCAATGGAGTGCTAA
# TF - GntR: Ajs_2054
>Ajs_2054(gntR) Score=6 Pos=-55 [Acidovorax sp. JS42]
GAAAGATAGCGCTATCTTAA
>Ajs_2054(gntR) Score=6 Pos=-219 [Acidovorax sp. JS42]
TCAAGATAGCGCTATCTTTA
>Ajs_2053(gntK) Score=6 Pos=-180 [Acidovorax sp. JS42]
TTAAGATAGCGCTATCTTTC
# TF - MerR: Ajs_1474, Ajs_1301, Ajs_2699
>Ajs_1475(merT) Score=6.5 Pos=-34 [Acidovorax sp. JS42]
ACTCCGTACTTAACTACGGAAG
>Ajs_1300(merT) Score=6.2 Pos=-63 [Acidovorax sp. JS42]
ACTCCGTAGTTGACTACGGAAG
# TF - CadR-PbrR: Ajs_1336, Ajs_1241, Ajs_1851, Ajs_2593
>Ajs_1335(cadA) Score=5.5 Pos=-34 [Acidovorax sp. JS42]
ACTCTATACCCACTTCAGGGT
>Ajs_1241(pbrR) Score=6.3 Pos=-54 [Acidovorax sp. JS42]
ACTCTATAGTTACTATAGAGT
>Ajs_1242(cadA) Score=6.3 Pos=-61 [Acidovorax sp. JS42]
ACTCTATAGTAACTATAGAGT
>Ajs_3474(czcD) Score=5.2 Pos=-61 [Acidovorax sp. JS42]
ACATTATAGCTACTATATAGT
>Ajs_2594(cadA) Score=5.7 Pos=-34 [Acidovorax sp. JS42]
ACCTTGGAGTGGCTTCAAGGT
# RNA - SAH_riboswitch
>Ajs_0147(metH) Score=25.9 Pos=-202 [Acidovorax sp. JS42]
TTCCCGAGGAGCGCTGCAGCGCCCGCCGGCCGGGGCCGCACAGGCGGCTCGCGCGTGGCGGCGTCAGGCTCGGGCCCACCGCGGCATGCAGCCGTGCGTGTACCAACGGCGCTCACCTGATGT
>Ajs_0618(ahcY) Score=60 Pos=-147 [Acidovorax sp. JS42]
TTTCCGAGGAGCGTTGCAGCGTCCCCAGCACGGCGGGGCGCGAGGCTCGGAAGTCATACCCAGCAACGACGCTCACCCACGCC
# TF - CueR: Ajs_1373, Ajs_0017
>Ajs_0018(copZ) Score=5 Pos=-140 [Acidovorax sp. JS42]
ACCCTGACATGCTGGCAAGGT
>Ajs_1372(copA2) Score=5.3 Pos=-64 [Acidovorax sp. JS42]
ACCTTCCCACGATGGTAAGCC
>Ajs_1368(copZ2) Score=5.1 Pos=-65 [Acidovorax sp. JS42]
ACCTTCCCACCGTGACAAGGC
>Ajs_0019(copA) Score=5 Pos=-58 [Acidovorax sp. JS42]
ACCTTGCCAGCATGTCAGGGT
# TF - ModE3: Ajs_3130
>Ajs_3129(tupA) Score=5.9 Pos=-58 [Acidovorax sp. JS42]
CTATGCACAAGTTTTCATAT
>Ajs_3943(Ajs_3943) Score=6.4 Pos=-65 [Acidovorax sp. JS42]
CTATGCAAATCTTTTCATAG
# TF - MetR: Ajs_1631
>Ajs_1631(metR) Score=4 Pos=-13 [Acidovorax sp. JS42]
TTGAATATTTCTAAT
>Ajs_1631(metR) Score=3.4 Pos=-44 [Acidovorax sp. JS42]
ATGATTCAAACGAAA
>Ajs_1630(metE) Score=4 Pos=-99 [Acidovorax sp. JS42]
ATTAGAAATATTCAA
>Ajs_1630(metE) Score=3.4 Pos=-68 [Acidovorax sp. JS42]
TTTCGTTTGAATCAT
# TF - Daci_0595: Ajs_3842
>Ajs_3843(PF01810) Score=15.8 Pos=-125 [Acidovorax sp. JS42]
GCACTGTGCCA-(10)-CGATACAGTGC-(16)-TGACTGTATTG-(0)-GTACTGTAATG
# TF - GguR: Ajs_1995
>Ajs_1995(gguR) Score=5.3 Pos=-39 [Acidovorax sp. JS42]
ATGTTGTCTGATAACGT
>Ajs_1994(tctC1) Score=5.1 Pos=-51 [Acidovorax sp. JS42]
ATGTTGTACGATGACGT
>Ajs_1994(tctC1) Score=4.3 Pos=-44 [Acidovorax sp. JS42]
ACGATGACGTATAACTT
>Ajs_1996(gudD2) Score=5.3 Pos=-74 [Acidovorax sp. JS42]
ACGTTATCAGACAACAT