# TF - NagR: Smlt4022
>Smlt4025(nagK2) Score=5.7 Pos=-89 [Stenotrophomonas maltophilia K279a]
GTTGACATCGTTGTCAGC
>Smlt4023(nagP) Score=5.7 Pos=-307 [Stenotrophomonas maltophilia K279a]
GCTGACAACGATGTCAAC
>Smlt0682(chiA) Score=5.6 Pos=-155 [Stenotrophomonas maltophilia K279a]
GATGACAACGTTGTCCCC
>Smlt2566(naxA) Score=5.7 Pos=-94 [Stenotrophomonas maltophilia K279a]
ATTGACAGCGTTGTCAGG
# TF - FabR
>Smlt2832(desC) Score=6.3 Pos=-9 [Stenotrophomonas maltophilia K279a]
AATATACACATGTATACA
>Smlt2833(fabR2) Score=6.3 Pos=-62 [Stenotrophomonas maltophilia K279a]
TGTATACATGTGTATATT
# TF - BirA: Smlt0282
>Smlt4459(bioB) Score=8.2 Pos=-91 [Stenotrophomonas maltophilia K279a]
CCGTAAACC----------------GGTTGACAG
# TF - NrdR: Smlt0722
>Smlt0247(nrdA1) Score=5.8 Pos=-274 [Stenotrophomonas maltophilia K279a]
CCCCACTATCTTGTGG
>Smlt2842(nrdA2) Score=5.5 Pos=-160 [Stenotrophomonas maltophilia K279a]
CCCCACTATGTTGTGG
>Smlt2842(nrdA2) Score=4.8 Pos=-192 [Stenotrophomonas maltophilia K279a]
TTACCGCATCTTGTGT
# TF - Zur: Smlt1442
>Smlt0520(yciC) Score=5.5 Pos=-48 [Stenotrophomonas maltophilia K279a]
TAAGTGTTATACAGTAACATTCC
>Smlt1446(omr1) Score=5.6 Pos=-111 [Stenotrophomonas maltophilia K279a]
GTTATGGAATAATATAACATCCC
>Smlt0157(omr2) Score=6.1 Pos=-42 [Stenotrophomonas maltophilia K279a]
GAAATGTTATATGATTACATTTC
# TF - LldR: Smlt2909
>Smlt2910(lldP) Score=5.3 Pos=-81 [Stenotrophomonas maltophilia K279a]
TATTGGTACGACCAATA
>Smlt2910(lldP) Score=5.2 Pos=-178 [Stenotrophomonas maltophilia K279a]
AAATGGTCGGACCAATA
# TF - HutC: Smlt3105
>Smlt3107(hutI) Score=5 Pos=-33 [Stenotrophomonas maltophilia K279a]
TATATTGTATAGACATATAA
>Smlt3106(hutF) Score=4.3 Pos=-45 [Stenotrophomonas maltophilia K279a]
TTATATGTCTATACAATATA
# TF - IscR: Smlt1158
>Smlt1158(iscR) Score=8.3 Pos=-44 [Stenotrophomonas maltophilia K279a]
AAAGCGTACAATTTCAGTCCGCTTT
# TF - NtrC: Smlt0159
>Smlt0151(glnA) Score=5.3 Pos=-136 [Stenotrophomonas maltophilia K279a]
TGCACTCGTTTGGTGCG
>Smlt0151(glnA) Score=5.4 Pos=-165 [Stenotrophomonas maltophilia K279a]
TGCACCAAACGGGTGCG
>Smlt0158(ntrB) Score=6 Pos=-17 [Stenotrophomonas maltophilia K279a]
TGCACTACATTGGTGCA
# TF - Fur: Smlt1986
>Smlt2935(fecI4) Score=4.6 Pos=-87 [Stenotrophomonas maltophilia K279a]
GGATGCAAATGATTCTCTTTT
>Smlt3227(fpr) Score=5.5 Pos=-61 [Stenotrophomonas maltophilia K279a]
CAATGAGAACCCATCTCATTT
>Smlt3999(fhuE) Score=4.8 Pos=-94 [Stenotrophomonas maltophilia K279a]
AAATAGGAATAGTTCGTATTA
>Smlt1145 Score=5.3 Pos=-99 [Stenotrophomonas maltophilia K279a]
TTTTGGCAATCATTCTCATTT
>Smlt2848(fecI) Score=5.8 Pos=-28 [Stenotrophomonas maltophilia K279a]
TAATGGGAATCATTCGCATTA
>Smlt1145 Score=4.1 Pos=-76 [Stenotrophomonas maltophilia K279a]
AACGGCTAACAGCTCTCATTA
>Smlt3900(fecI3) Score=5.1 Pos=-69 [Stenotrophomonas maltophilia K279a]
GAACGTGACTGATTCTCATTA
>Smlt2858(COG4771) Score=5 Pos=4 [Stenotrophomonas maltophilia K279a]
AATCAGCAATAATTCTCATTT
>Smlt1567(XAC0271) Score=5.6 Pos=-126 [Stenotrophomonas maltophilia K279a]
AAATGCGAATGCCTATCATTT
>Smlt2664(fecI2) Score=5.4 Pos=-86 [Stenotrophomonas maltophilia K279a]
AAACGCGAACGGTTCCCATTA
>Smlt2210(feoA) Score=4.5 Pos=-38 [Stenotrophomonas maltophilia K279a]
AATCGAGAACCATTTACATCC
>Smlt1233(fpvA) Score=4.5 Pos=-136 [Stenotrophomonas maltophilia K279a]
TGTTAAGAATTATTTACATTT
>Smlt1426(pfeA) Score=4.8 Pos=-142 [Stenotrophomonas maltophilia K279a]
ATTTGAGAATCACTCGCATTG
>Smlt3022(fhuA) Score=5.9 Pos=-42 [Stenotrophomonas maltophilia K279a]
AAATGCTAATCTTTCTCATTT
>Smlt0794(hemP) Score=6.1 Pos=-45 [Stenotrophomonas maltophilia K279a]
AACTGAGAATCATTATCATTT
>Smlt0794(hemP) Score=5.1 Pos=-69 [Stenotrophomonas maltophilia K279a]
AATTGAGAATGGTTGTTGATT
>Smlt4297(bfr) Score=4.2 Pos=-81 [Stenotrophomonas maltophilia K279a]
CAATGCGCACGATTCGCGTTC
>Smlt4298(bfd) Score=5.4 Pos=-73 [Stenotrophomonas maltophilia K279a]
GATTGACAACCATTCTCGTTT
>Smlt1142(pepSY) Score=4.6 Pos=-85 [Stenotrophomonas maltophilia K279a]
AATTGCGAGCTATTCTCATCA
>Smlt1149 Score=5.1 Pos=-66 [Stenotrophomonas maltophilia K279a]
ATATGCGAATCATTATCGTTG
# TF - AgaR: Smlt4437
>Smlt4434(agaS) Score=8.2 Pos=-64 [Stenotrophomonas maltophilia K279a]
CTTTCG-------------CGAAAG
>Smlt4433(agaH-III) Score=8.2 Pos=-313 [Stenotrophomonas maltophilia K279a]
CTTTCG-------------CGAAAG
# TF - LexA: Smlt1740
>Smlt1740(lexA) Score=7 Pos=15 [Stenotrophomonas maltophilia K279a]
TTAGTAGTAATACTACTAA
>Smlt2926(imuA) Score=6.4 Pos=-145 [Stenotrophomonas maltophilia K279a]
TCATTAGTAATTCTACTCA
# TF - PsrA: Smlt2053
>Smlt2053(psrA) Score=5.7 Pos=-35 [Stenotrophomonas maltophilia K279a]
TATCAAACAATCGTTTGATT
>Smlt0198(etfD) Score=4.8 Pos=-84 [Stenotrophomonas maltophilia K279a]
ATTCAAACAACCGTTTCGCC
>Smlt4239(aroQ) Score=5.3 Pos=-96 [Stenotrophomonas maltophilia K279a]
TTTCAAACGTTCGATTGAAA
# RNA - TPP
>Smlt3909(thiC) Score=60 Pos=-184 [Stenotrophomonas maltophilia K279a]
CACCAAGAAGCGGGGGTACCGGGCCATCTGGCCACGGTTGAGACAGTCCCTTGGAACCTGATCCGGCTCATACCGGCGTAGGGAAGCTTTGCAATGCAGCCG
>Smlt0190(omp_thi) Score=62.6 Pos=-168 [Stenotrophomonas maltophilia K279a]
TCACCTGAAGCGGGGGTGCCTGGATCTGCCAGGCTGAGAGAGTCCCTTGGAACCTGATCCGGTTTGCACCGGCGTAGGGAGCTTTGAGCCGCAGCCA
# RNA - FMN
>Smlt0727(ribE) Score=104.8 Pos=-219 [Stenotrophomonas maltophilia K279a]
AACGTCTTCAGGGCGGGGTGCAATTCCCCACCGGCGGTAGGTGCGCAAGCACGAGCCCGCGAGCGCCCCGGCCCACGGCCGGGGGTCAGCAGATCCGGTCCAATGCCGGAGCCGACGGTCATAGTCCGGATGAAAGAAGACGGTGCC
# TF - HrcA: Smlt1990
>Smlt4215(groS) Score=6.8 Pos=-73 [Stenotrophomonas maltophilia K279a]
CTGGCACTCGCCTGGGGTGAGTGCTAA
# TF - MntR: Smlt2837
>Smlt2837(mntR) Score=5.9 Pos=-110 [Stenotrophomonas maltophilia K279a]
AATATAGCTCCTGCTATAGT
>Smlt2838(mntH) Score=5.9 Pos=-27 [Stenotrophomonas maltophilia K279a]
ACTATAGCAGGAGCTATATT
# TF - NmlR: Smlt1305
>Smlt1305(nmlR) Score=6.5 Pos=-33 [Stenotrophomonas maltophilia K279a]
CTTAGAGTGCACTCTAAC
# TF - SoxR: Smlt1084
>Smlt2828(sodA) Score=6.1 Pos=-76 [Stenotrophomonas maltophilia K279a]
ACCTCAACCAATGTTGAGGT
>Smlt1083(PF07690) Score=6.3 Pos=-23 [Stenotrophomonas maltophilia K279a]
ACCTCAACTGCAGTTGAGGT
>Smlt1084(soxR) Score=6.3 Pos=-26 [Stenotrophomonas maltophilia K279a]
ACCTCAACTGCAGTTGAGGT
>Smlt1830(mexE) Score=5.8 Pos=-140 [Stenotrophomonas maltophilia K279a]
ACCTCGACCATGGTTGAGGT
>Smlt2940(PF01042) Score=5.8 Pos=-55 [Stenotrophomonas maltophilia K279a]
ACCTCAACCGGGGTTGAGGT
# TF - ZntR: Smlt2949
>Smlt2949(zntR) Score=5 Pos=-57 [Stenotrophomonas maltophilia K279a]
ACTCTCGACCAGACTCCAGGCT
# TF - CueR: Smlt2177
>Smlt2178(copZ) Score=5.6 Pos=-61 [Stenotrophomonas maltophilia K279a]
ACCCTGCCATCGTTGGAAGGT
>Smlt2176(copA) Score=6.1 Pos=-62 [Stenotrophomonas maltophilia K279a]
ACCTTCCCACGATGGCAAGGT
# TF - MerR: Smlt2409
>Smlt2410(merT) Score=6.4 Pos=-66 [Stenotrophomonas maltophilia K279a]
ACTCCGTACTTGACTACGGAAG
# TF - XCC2209: Smlt3255
>Smlt1175(omp2) Score=5.5 Pos=-42 [Stenotrophomonas maltophilia K279a]
ATCTGAAAGCGATTACACCC
>Smlt0449(bglX) Score=5.7 Pos=-30 [Stenotrophomonas maltophilia K279a]
GCTTGTAAACGTTTTCATCA
>Smlt3253(COG5368) Score=5.6 Pos=-31 [Stenotrophomonas maltophilia K279a]
CCTTGTAAACGATTTCAGAT
>Smlt3255(XCC2209) Score=5.7 Pos=-46 [Stenotrophomonas maltophilia K279a]
AGATGGAAACGCTTACATTC
>Smlt1794(ugpC) Score=5.8 Pos=-148 [Stenotrophomonas maltophilia K279a]
ACGTGAAAACGTTTACATGG
>Smlt4137(PF10947) Score=5.7 Pos=-36 [Stenotrophomonas maltophilia K279a]
TCATGAAAACGTTTTCTCAC
# TF - FruR2: Smlt2555
>Smlt2555(fruR2) Score=6.8 Pos=-126 [Stenotrophomonas maltophilia K279a]
TATTGGGAACGTTCCCACTG
>Smlt2556(fruB) Score=6.4 Pos=3 [Stenotrophomonas maltophilia K279a]
CAGTGGGAACGTTCCCAATA
>Smlt2556(fruB) Score=5.9 Pos=-106 [Stenotrophomonas maltophilia K279a]
CATTGGAAACGTTCCCGGAA
# TF - ManR: Smlt2181
>Smlt2179(omp(Man)) Score=5.7 Pos=-62 [Stenotrophomonas maltophilia K279a]
AAATTAGATCGATTCAAGTT
>Smlt2179(omp(Man)) Score=5.1 Pos=-183 [Stenotrophomonas maltophilia K279a]
CGCTTAGATCGATCCAAGAC
>Smlt2175(omp(Man)-2) Score=4 Pos=-87 [Stenotrophomonas maltophilia K279a]
GTCTTGAACCGATCCAGGTG
>Smlt2180(mnnA) Score=5.6 Pos=-144 [Stenotrophomonas maltophilia K279a]
TACTTGAATCGATCTAAATT
>Smlt2175(omp(Man)-2) Score=5.4 Pos=-123 [Stenotrophomonas maltophilia K279a]
AGTTTGGATCGATCCACAGG
# TF - MalR: Smlt1186
>Smlt1177(COG3408) Score=6.5 Pos=-101 [Stenotrophomonas maltophilia K279a]
CCATGAATACGTATGCAGCT
>Smlt1175(omp(Mal)) Score=6.7 Pos=-12 [Stenotrophomonas maltophilia K279a]
CATTGAATACGTATGCAGGG
>Smlt1174(malZ) Score=6.4 Pos=-91 [Stenotrophomonas maltophilia K279a]
GCGTGAATACGTATGCAGGT
>Smlt1176(susB) Score=5.9 Pos=-90 [Stenotrophomonas maltophilia K279a]
AGCTGCATACGTATTCATGG
# TF - PdxR2: Smlt2930
>Smlt2930(pdxR2) Score=5.7 Pos=-16 [Stenotrophomonas maltophilia K279a]
TTTGGCATAGGACAAA
>Smlt2931(COG0325) Score=5.7 Pos=-76 [Stenotrophomonas maltophilia K279a]
TTTGTCCTATGCCAAA
# TF - XAC1548: Smlt3185
>Smlt0201(XAC0231) Score=5.5 Pos=-55 [Stenotrophomonas maltophilia K279a]
TGGTGTACTACCTTACTACCACACCA
>Smlt3185(XAC1548) Score=6.5 Pos=-288 [Stenotrophomonas maltophilia K279a]
CGGTGTTATAGTTGCATACAACACCA
# RNA - SAH_riboswitch
>Smlt0775(ahcY) Score=50.6 Pos=-121 [Stenotrophomonas maltophilia K279a]
CCCTGCCGAGGGGCGCTGCGACCGGATCCCACGAGGCCCGGCCAGGCTCGGTAAGGTGGCTTTGTAACAACGGCGCCCGGCTAGA
# TF - MetR: Smlt2583
>Smlt2583(metR) Score=5 Pos=-19 [Stenotrophomonas maltophilia K279a]
ATGAGCAGGATTCAT
>Smlt2584(PF03358) Score=5 Pos=-71 [Stenotrophomonas maltophilia K279a]
ATGAATCCTGCTCAT
# TF - HisR: Smlt2161
>Smlt2162(hisG) Score=7.2 Pos=-384 [Stenotrophomonas maltophilia K279a]
TGTACTAACGCGCTATTACA
>Smlt2161(hisR) Score=7.2 Pos=-23 [Stenotrophomonas maltophilia K279a]
TGTACTAACGCGCTATTACA
# TF - Smlt1075: Smlt1075
>Smlt1076(COG697) Score=12.9 Pos=-128 [Stenotrophomonas maltophilia K279a]
AACCGTAGTGG-(8)-GCAGTACAGTT-(6)-GACTGTACTGG
# TF - Smlt0590: Smlt0590
>Smlt0590(Smlt0590) Score=9.6 Pos=-18 [Stenotrophomonas maltophilia K279a]
TCATGGGTACAGCA-----------------CGATGGATACAGAT
# TF - MlnR: Smlt1224
>Smlt1232(mdcA) Score=6.5 Pos=-44 [Stenotrophomonas maltophilia K279a]
GTAATTATGTCGTAATTAC
# TF - YrdX3: Smlt4402
>Smlt4401(cyoA) Score=13.4 Pos=-170 [Stenotrophomonas maltophilia K279a]
CCATACGT-(14)-CCATACAA-(9)-TTGTATGG
# TF - SamR: Smlt3175
>Smlt0767(metF2) Score=4.8 Pos=-58 [Stenotrophomonas maltophilia K279a]
AAGCATCCATCTTGATGAAGAGAT
>Smlt0780(metK) Score=6.5 Pos=-34 [Stenotrophomonas maltophilia K279a]
ATCTTTCCATCCGAATCAAGGGAT
>Smlt3175(samR) Score=6 Pos=-28 [Stenotrophomonas maltophilia K279a]
ATCTCTATATCGCGATAGGTAGAT
>Smlt3635(metX2) Score=6.2 Pos=-252 [Stenotrophomonas maltophilia K279a]
ATCGCTTTATCCGCATGAAGGGAT