# TF - TyrR: HI0410
>HI0410(tyrR) Score=5.6 Pos=-74 [Haemophilus influenzae Rd KW20]
ATGTAAAATAATATTTACAC
>HI1290(tyrA) Score=5.8 Pos=-43 [Haemophilus influenzae Rd KW20]
TTGTAATTAATTTTTTACAA
>HI1290(tyrA) Score=4.8 Pos=-20 [Haemophilus influenzae Rd KW20]
ATGTAAGATAAAAATTACAG
# TF - FabR: HI0570
>HI1325(fabA) Score=5.7 Pos=-96 [Haemophilus influenzae Rd KW20]
TGCGAACAAGTGTTAGCT
>HI0002(lcfH) Score=5.7 Pos=-20 [Haemophilus influenzae Rd KW20]
AGCGCACAACTGTTCGCT
# TF - ArgR: HI1209
>HI0811(argH) Score=4.9 Pos=-34 [Haemophilus influenzae Rd KW20]
ATAGAATAATTAATTAAA
>HI0811(argH) Score=4.9 Pos=-55 [Haemophilus influenzae Rd KW20]
TATGAATAAATATGCACA
>HI1209(argR) Score=5 Pos=-51 [Haemophilus influenzae Rd KW20]
AGTGAATTTTTATGCAAT
>HI1180(artP) Score=3.7 Pos=-82 [Haemophilus influenzae Rd KW20]
TGGGATTTTTTATTAATA
>HI1180(artP) Score=5 Pos=-61 [Haemophilus influenzae Rd KW20]
CTTGCATAATTATGCATA
# TF - NrdR: HI0943
>HI0075(nrdD) Score=4.3 Pos=-55 [Haemophilus influenzae Rd KW20]
GATCTATATATAGTGC
>HI0075(nrdD) Score=5.5 Pos=-87 [Haemophilus influenzae Rd KW20]
ACACTACATATTGTGT
>HI0075(nrdD) Score=5.1 Pos=-23 [Haemophilus influenzae Rd KW20]
ACACTATATATTGGAG
>HI1659(nrdA) Score=5.6 Pos=-56 [Haemophilus influenzae Rd KW20]
ACACTATATCTTGTGT
>HI1659(nrdA) Score=5.1 Pos=-87 [Haemophilus influenzae Rd KW20]
ACACATTATCTTGTGG
# TF - FadR: HI0426
>HI1325(fabA) Score=4.2 Pos=-114 [Haemophilus influenzae Rd KW20]
GACTGCTCCGACAAGTT
# TF - IscR: HI0379
>HI0433(nfuA) Score=4.8 Pos=-38 [Haemophilus influenzae Rd KW20]
ATTCCCGATACTTTCTCTCAAGTAT
>HI0379(iscR) Score=6.3 Pos=-60 [Haemophilus influenzae Rd KW20]
ATAATTGACTAAATTAGTCAGATAT
# TF - SiaR: HI0143
>HI0145(nanE) Score=4.8 Pos=-163 [Haemophilus influenzae Rd KW20]
TATGAAAAAACACTTCAAA
>HI0146(siaP) Score=4.8 Pos=-205 [Haemophilus influenzae Rd KW20]
TTTGAAGTGTTTTTTCATA
# TF - Fur: HI0190
>HI0661(hgp2) Score=4.4 Pos=-85 [Haemophilus influenzae Rd KW20]
AATAATGAGAATAGTTTTT
>HI0661(hgp2) Score=4.9 Pos=2 [Haemophilus influenzae Rd KW20]
GAGAATTATTATTATTTTT
>HI0253(exbB) Score=4.1 Pos=-62 [Haemophilus influenzae Rd KW20]
ATGATTGAAATTCATTCTC
>HI0253(exbB) Score=4.2 Pos=-56 [Haemophilus influenzae Rd KW20]
GAAATTCATTCTCAATTAT
>HI0635(hbp) Score=4.3 Pos=-67 [Haemophilus influenzae Rd KW20]
ATATATGACAATTATTATC
>HI0635(hbp) Score=4.6 Pos=-61 [Haemophilus influenzae Rd KW20]
GACAATTATTATCATTAAG
>HI0990(iga) Score=5 Pos=-198 [Haemophilus influenzae Rd KW20]
AAAAATTATTATCATTACC
>HI0712(hbp) Score=5 Pos=-33 [Haemophilus influenzae Rd KW20]
AATAATTATTATCATTAAA
>HI0635(hbp) Score=4.2 Pos=-232 [Haemophilus influenzae Rd KW20]
AATCATCATAATGATTACT
>HI0712(hbp) Score=4.4 Pos=-36 [Haemophilus influenzae Rd KW20]
TATAATAATTATTATCATT
>HI0712(hbp) Score=4.6 Pos=-39 [Haemophilus influenzae Rd KW20]
ATGTATAATAATTATTATC
>HI0712(hbp) Score=4.2 Pos=-134 [Haemophilus influenzae Rd KW20]
AAAAATGATTTTCTTTTAT
>HI1610(tyrS) Score=4.7 Pos=-160 [Haemophilus influenzae Rd KW20]
GCTATTGATAACAATTATC
>HI1610(tyrS) Score=4.1 Pos=-190 [Haemophilus influenzae Rd KW20]
AGGAATTATTTTCATTTAA
>HI1153(hpt) Score=4.4 Pos=-200 [Haemophilus influenzae Rd KW20]
GAAATTGAGAATAATTCTT
>HI1153(hpt) Score=4.3 Pos=-194 [Haemophilus influenzae Rd KW20]
GAGAATAATTCTTATTGAC
>HI1217(cjrC) Score=4.7 Pos=-39 [Haemophilus influenzae Rd KW20]
GATAATCATAATATTTCTC
>HI0854(hugZ) Score=4.2 Pos=-36 [Haemophilus influenzae Rd KW20]
AATAATAAAAATTAATTGT
>HI0113(hemR) Score=4.6 Pos=-33 [Haemophilus influenzae Rd KW20]
ATAAATAATTATCATTAAG
>HI1069(nrfA) Score=4.6 Pos=-160 [Haemophilus influenzae Rd KW20]
GATAATAATACTCAAAATT
>HI1069(nrfA) Score=5.1 Pos=26 [Haemophilus influenzae Rd KW20]
GATATTAATAATAATTCTC
>HI0362(sitA) Score=4.5 Pos=-127 [Haemophilus influenzae Rd KW20]
TATTTTGATAATCATTCCC
>HI0362(sitA) Score=4.2 Pos=-121 [Haemophilus influenzae Rd KW20]
GATAATCATTCCCATTCCA
>HI0990(iga) Score=4.5 Pos=-204 [Haemophilus influenzae Rd KW20]
AATATCAAAAATTATTATC
# TF - TrpR: HI0830
>HI0830(trpR) Score=6.7 Pos=-36 [Haemophilus influenzae Rd KW20]
TGCACTAGTTTAATAGTGTA
>HI0287(mtr) Score=6.5 Pos=-41 [Haemophilus influenzae Rd KW20]
TGTACTACTATAATAGTGCA
>HI1547(aroG) Score=6.2 Pos=-81 [Haemophilus influenzae Rd KW20]
CGAACTAGTTTACTAGTACA
>HI1430(COG4221) Score=6.5 Pos=-46 [Haemophilus influenzae Rd KW20]
TGTACTACTTTAATAGTACA
>HI1387(trpE) Score=6.8 Pos=-45 [Haemophilus influenzae Rd KW20]
TGCACTAGTTTAATAGTACA
# TF - UxuR: HI0054
>HI0053(HI0053) Score=5.6 Pos=-150 [Haemophilus influenzae Rd KW20]
AAATTGGTATTCCAATTT
>HI0053(HI0053) Score=4.7 Pos=-100 [Haemophilus influenzae Rd KW20]
TATTTGGTATTCCAAAAA
>HI0054(uxuR) Score=4.7 Pos=-78 [Haemophilus influenzae Rd KW20]
TTTTTGGAATACCAAATA
>HI0054(uxuR) Score=5.6 Pos=-28 [Haemophilus influenzae Rd KW20]
AAATTGGAATACCAATTT
# TF - PurR: HI1635
>HI0464(rpiA) Score=4.9 Pos=-35 [Haemophilus influenzae Rd KW20]
ACACAATCGTTTACTT
>HI0609(folD) Score=5.1 Pos=-45 [Haemophilus influenzae Rd KW20]
TAGCAAACGCTTTCTT
>HI1615(purE) Score=5.8 Pos=-76 [Haemophilus influenzae Rd KW20]
TAGCAAACGTTTGCCT
>HI1726(purC) Score=5.9 Pos=-78 [Haemophilus influenzae Rd KW20]
TAGCAAACGTTTGCTT
>HI0887(purH) Score=6.2 Pos=-64 [Haemophilus influenzae Rd KW20]
AAGCAAACGTTTGCGT
>HI1429(HI1429) Score=6.1 Pos=-63 [Haemophilus influenzae Rd KW20]
TCGCAAACGTTTGCTT
>HI1206(cvpA) Score=6.1 Pos=-83 [Haemophilus influenzae Rd KW20]
ACGCAAACGTTTTCTT
>HI0125(yjcD) Score=5.9 Pos=-84 [Haemophilus influenzae Rd KW20]
ACGCAAACGTTTACTT
# TF - RbsR: HI0506
>HI0501(rbsD) Score=6 Pos=-37 [Haemophilus influenzae Rd KW20]
TTATCGAAACGTTTCGATAA
# TF - ModE: HI1694
>HI1694(modE) Score=5.9 Pos=-118 [Haemophilus influenzae Rd KW20]
AACGTTATTTACTTGATTATATATTGAA
>HI0105(ybgI) Score=6.5 Pos=-161 [Haemophilus influenzae Rd KW20]
ATCGCTATAAATTTATGTATATAATGAA
>HI1525(momA) Score=6.8 Pos=-60 [Haemophilus influenzae Rd KW20]
TTCATTATACAATTTTATATATATCGAT
>HI1693(modA) Score=6.2 Pos=-101 [Haemophilus influenzae Rd KW20]
AGCGTTATATATTTTACTAAATAATTTT
>HI1676(moaA) Score=6.8 Pos=-246 [Haemophilus influenzae Rd KW20]
TTCATTATGTATTTTTTTATATAATTGA
# TF - LexA: HI0749
>HI0749(lexA) Score=5.2 Pos=-46 [Haemophilus influenzae Rd KW20]
ATCTGTATACAATACCAGTT
>HI1546(impA) Score=4.9 Pos=-88 [Haemophilus influenzae Rd KW20]
CCCTGTATGAAATATCAGTA
>HI1546(impA) Score=4.9 Pos=-62 [Haemophilus influenzae Rd KW20]
AACTGTACAAAAAAACAAGG
>HI0600(recA) Score=5.1 Pos=-60 [Haemophilus influenzae Rd KW20]
ACCTGTACATCAATACAGAT
>HI0749(lexA) Score=5 Pos=-26 [Haemophilus influenzae Rd KW20]
ATCTGTGTTTAAAAACAGGA
>HI1188(uvrD) Score=5.5 Pos=-32 [Haemophilus influenzae Rd KW20]
AACTGTAAATTTAAACAGAT
>HI0250(ssb) Score=5.1 Pos=-93 [Haemophilus influenzae Rd KW20]
ATCTGTGCAAATATCCAGTT
>HI1258(mfd) Score=5.6 Pos=-96 [Haemophilus influenzae Rd KW20]
AACTGTTTTTTTAAACAGTT
>HI0249(uvrA) Score=5.2 Pos=-80 [Haemophilus influenzae Rd KW20]
AACTGGATATTTGCACAGAT
>HI0313(ruvA) Score=4.7 Pos=-64 [Haemophilus influenzae Rd KW20]
AACTGGATGTTCGTCCAGTT
>HI0070(recN) Score=5.1 Pos=-55 [Haemophilus influenzae Rd KW20]
TACTGTAAATTAAGTCAGTT
# RNA - L10_leader
>HI0640(rplJ) Score=21.1 Pos=-169 [Haemophilus influenzae Rd KW20]
GACCTATTCAAGCCCCATCCAAGACCGTAGGGGAGTAATCTTAATTATCCTACGTAGATGGTGAACAGAATAAGAATTTTTCTTGCTTCTGGG
# RNA - Leu_leader
>HI0986(leuA) Score=17.7 Pos=-225 [Haemophilus influenzae Rd KW20]
TTTATTTATGTTTCGTATTGTTTCTTTATCTCTCAACCTACTGCTCTCACATTTTGTGTGCGGCTAAGTTGTGGATAAAAAAACAGTCAGATGTAAATACCCAATTTTAAACCCGCACTTTATAAGTTGCGGGTTTTTTA
# RNA - His_leader
>HI0325(yuiF) Score=77.4 Pos=-218 [Haemophilus influenzae Rd KW20]
CATCATCACCATTCAACTGAATAATCTTTCAGGTTTTTGGTGTGCTTGGAAGATTTCTTCCGAGCTGACAGGATAATAAAAATCTTACCCCTCGGAAGGCAACTTTCGAGGGGTTTTGTTTTA
>HI0468(hisG) Score=65.2 Pos=-165 [Haemophilus influenzae Rd KW20]
CATCATCACCACACCTGATTATCTTTCAGGCGTGATTGTATGTTTGGAAGATAATAAAATATCTTCCGAGTGTAATAAAAATCAGTGTAAAAGCAATAAATACCCCTCGGAAGGCAATTTTCGAGGGGTTTTCTTTTA
# RNA - Lysine
>HI1586(lysW) Score=127.7 Pos=-196 [Haemophilus influenzae Rd KW20]
CTACAAAAGTAGAGGCGCAATTATTATAAGTATTTTTTCAGAGTGGATAACGAAGAAGAAAAAAGAAAGGAATAGTTGCCGAAATCAAATAAAAGTCGTTTTGTTTGGTTGGTGGCGTGCTCGAAAGGGGCGACACTGTCATAGTTTTTCTGATTAACTATGGAGTGCTACGGTTGTT
# RNA - PreQ1
>HI1191(queC) Score=42 Pos=-47 [Haemophilus influenzae Rd KW20]
ACCCCCCGTAGTTCGCAAACCTCCTACAATAAAAAACTAGGTAAAA
# RNA - FMN
>HI0764(ribB) Score=114.1 Pos=-265 [Haemophilus influenzae Rd KW20]
CGCATTCTCAGGGCAGGGTGAAATTCCCTACCGGTGGTAAAGCCCACGAGCGTTTAAAAGTGCGGTCAATTTTTGGCAAATTTTTCCTGCGAAATTGTCCTGATTTTCACTTTTAAAGTCAGCAGATTTGGTGAAATTCCAAAGCCGACAGTAAAGTCTGGATGAAAGAGAATAAAACG
# RNA - S15
>HI1468(rpsO) Score=78.3 Pos=-61 [Haemophilus influenzae Rd KW20]
CACTTCCGTCATAAATCCATTTTTGAATTGCTATTTGATCGCTCTTTTTTAGGAGTAAAAAATGTCTCTAAGTACTGAAAAAAAAGCAGCAATCGTTGCTGAATTTGGTCGTGATGCG
>HI1328(rpsO) Score=102.4 Pos=-63 [Haemophilus influenzae Rd KW20]
GTCATCGCTGAGTTAGAGATCGGCGAATGATGTATTAACAACACTACCTTTTAGGAGTAAAAAATGTCTCTAAGTACTGAAAAAAAAGCAGCAATCGTTGCTGAATTTGGTCGTGATGCGAA
# RNA - MOCO_RNA_motif
>HI1676(moaA) Score=83.3 Pos=-130 [Haemophilus influenzae Rd KW20]
ATTTAACGCATAACTCCGAGCTTGTTTAGCCTAAGTTTCATAGAAATACGGTGGCAAGCCAATAACGCGCTACGTTATTCAGGGATACGCTGGAAACGGTTTATCCTCTCCGTATTTAGAAAGGTGTAAAATGCAATCCATT
# RNA - Thr_leader
>HI0089(thrA) Score=62.2 Pos=-152 [Haemophilus influenzae Rd KW20]
ATCATTAGCACGATTACCGCCATTATGATGACCATTATTATGATTAATGGTGCGGGTTAGTGCAGCAAAAACAAGATACAGAAAACCCGCGATTCAACTGAATAGCGGGTTTTTTTATA
# RNA - Glycine
>HI0883(glyP) Score=31.4 Pos=-303 [Haemophilus influenzae Rd KW20]
GATGAAGGTAGCTGGAGAGCGGGAAATTGACCCCACACCGACGATGTAAAATCTTTCAGGTGCGATGGCAGGGACTGTTAC
>HI0883(glyP) Score=58.8 Pos=-222 [Haemophilus influenzae Rd KW20]
TGGACGAACCCTTGGAGAGATCCATTTTAGAAATGGACGCCGAAGCGCAAAAGAGCGGTTAATTTTTCAATCGTTTTTCAAACGCTCAGGCAAAAGGACAGGGGCAAAAGA
# RNA - TPP
>HI0354(thiZ) Score=55.8 Pos=-161 [Haemophilus influenzae Rd KW20]
GTTTTTAGTCGGGGTGCCGAAAGGCTGAGATGATACCCGTGAACCTGAAACAGTTAGCACTGACGTAGGAAACTAATATGCCAAAAAATC
>HI1019(thiB) Score=57.9 Pos=-139 [Haemophilus influenzae Rd KW20]
AAGCCTAGTCGGGGTGCAATACGCTGAGATCATACCCGTGAACCTGAAACAGTTAATACTGACGTAGGAAACTAGGAATATAACCTTAT
>HI0415(thiM) Score=55 Pos=-211 [Haemophilus influenzae Rd KW20]
ACTTTTAGTCGGGGTGCCGAAAGGCTGAGATGATACCCGTGAACCTGAAACAGTTAGCACTGACGTAGGAAACTAATATGCCACATATTC
# TF - NarP: HI0726
>HI0932(eno) Score=4.2 Pos=-23 [Haemophilus influenzae Rd KW20]
TAACTTAATTGAGGAA
>HI0644(torY) Score=4.6 Pos=-48 [Haemophilus influenzae Rd KW20]
TAACTATAAGTAGTTA
>HI1047(dmsA) Score=4.5 Pos=-105 [Haemophilus influenzae Rd KW20]
TACCTATTAATGATTA
>HI1069(nrfA) Score=4.7 Pos=-99 [Haemophilus influenzae Rd KW20]
TACCTCTTTTTGAGTA
>HI0835(frdA) Score=4.6 Pos=-151 [Haemophilus influenzae Rd KW20]
TAGCTTTTTTGAGGTA
>HI0809(pckA) Score=3.8 Pos=-126 [Haemophilus influenzae Rd KW20]
TCACTAAAAAGAGGTA
>HI0932(eno) Score=4.2 Pos=-37 [Haemophilus influenzae Rd KW20]
TAACCCGTTTTAATTA
>HI1089(ccmA) Score=4.6 Pos=-84 [Haemophilus influenzae Rd KW20]
TACTTCTAAAGAGTTA
>HI1210(mdh) Score=3.8 Pos=-19 [Haemophilus influenzae Rd KW20]
TAACACATAAGGAGTA
>HI1047(dmsA) Score=4.7 Pos=-47 [Haemophilus influenzae Rd KW20]
TAACTCGTTTTAGTTA
>HI0884(arcA) Score=3.7 Pos=-83 [Haemophilus influenzae Rd KW20]
CACTTTTTTATTGTTA
# TF - NimR: HI1623
>HI1623(nimR) Score=6.4 Pos=-44 [Haemophilus influenzae Rd KW20]
AATATGAAGTAACTTTAGAAT
>HI1624(nikK) Score=6.4 Pos=-66 [Haemophilus influenzae Rd KW20]
ATTCTAAAGTTACTTCATATT
# TF - NmlR: HI0186
>HI0185(adhC) Score=5.7 Pos=-81 [Haemophilus influenzae Rd KW20]
TTTAGAGTGAACTCTAAA
>HI0186(nmlR) Score=6.1 Pos=-59 [Haemophilus influenzae Rd KW20]
TTTAGAGTTCACTCTAAA
# TF - CueR: HI0293
>HI0292(copA0) Score=5 Pos=-63 [Haemophilus influenzae Rd KW20]
ACCTTAACCTTATGTAAAGGT
>HI0293(cueR) Score=5 Pos=-34 [Haemophilus influenzae Rd KW20]
ACCTTTACATAAGGTTAAGGT
# TF - GalR: HI0821
>HI0820(galT) Score=6.2 Pos=-39 [Haemophilus influenzae Rd KW20]
TAATGTAATCGTTTACATTG
>HI0821(galR) Score=5.9 Pos=-188 [Haemophilus influenzae Rd KW20]
CAATGTAAACGATTACATTA
>HI0822(mglB) Score=6.1 Pos=-113 [Haemophilus influenzae Rd KW20]
TTATGTAATCATTTTCATTT
# TF - MetJ: HI0294
>HI1172(metK) Score=6.7 Pos=-50 [Haemophilus influenzae Rd KW20]
AGCCGTCTATACGTCA
>HI0294(metJ) Score=6 Pos=-83 [Haemophilus influenzae Rd KW20]
AGCCGTCTAGATTGTT
>HI1263(metX) Score=7.8 Pos=-87 [Haemophilus influenzae Rd KW20]
AGCCGTTTAGACGGCT
>HI1702(metE) Score=7.9 Pos=-52 [Haemophilus influenzae Rd KW20]
AGACGTTTAGCCGTCT
>HI0294(metJ) Score=7 Pos=-91 [Haemophilus influenzae Rd KW20]
GGAAGTTTAGCCGTCT
>HI0621(metN) Score=7.3 Pos=-61 [Haemophilus influenzae Rd KW20]
AGCAATCTAGACATCT
# TF - MetR: HI1739
>HI1739(metR) Score=5.2 Pos=-13 [Haemophilus influenzae Rd KW20]
ATGAATATTATTAAT
>HI1739(metR) Score=5 Pos=-82 [Haemophilus influenzae Rd KW20]
ATTAATTTTATTAAT
>HI1702(metE) Score=5.2 Pos=-128 [Haemophilus influenzae Rd KW20]
ATGAATTTATTTAAT
>HI0889(glyA) Score=5.5 Pos=-109 [Haemophilus influenzae Rd KW20]
ATGAATTAATTTCAT
>HI1444(metF) Score=4.7 Pos=-100 [Haemophilus influenzae Rd KW20]
ATTAATAATAATCAT
>HI0736(HI0736) Score=4.8 Pos=-55 [Haemophilus influenzae Rd KW20]
ATGATTAGATTTCAT