# TF - RutR4: PST_3596
>PST_3596(rutR4) Score=6 Pos=-156 [Pseudomonas stutzeri A1501]
TGTGGACCATTTGGTCCGAA
>PST_3597(rutA) Score=6 Pos=-157 [Pseudomonas stutzeri A1501]
TTCGGACCAAATGGTCCACA
# TF - PhhR: PST_3561
>PST_0869(hpd) Score=5.2 Pos=-143 [Pseudomonas stutzeri A1501]
CTGTAAGGAAAACCTGACAG
>PST_0869(hpd) Score=4.8 Pos=-203 [Pseudomonas stutzeri A1501]
CTGTCAGCTTTTCGTTACGC
>PST_3561(phhR) Score=4.9 Pos=-136 [Pseudomonas stutzeri A1501]
CTGTAAGAAATACATGACAG
>PST_3561(phhR) Score=5.4 Pos=-74 [Pseudomonas stutzeri A1501]
CTGTCAAATAATCTTGACGA
>PST_3562(phhA) Score=5.4 Pos=-191 [Pseudomonas stutzeri A1501]
TCGTCAAGATTATTTGACAG
>PST_3562(phhA) Score=4.9 Pos=-129 [Pseudomonas stutzeri A1501]
CTGTCATGTATTTCTTACAG
# TF - HexR: PST_3498
>PST_3497(zwf) Score=7.8 Pos=-85 [Pseudomonas stutzeri A1501]
ATGTTGT------ACTACAT
>PST_3500(edd) Score=6.6 Pos=-31 [Pseudomonas stutzeri A1501]
TTGTTAT------ACTACAA
>PST_3498(hexR) Score=7.8 Pos=-178 [Pseudomonas stutzeri A1501]
ATGTAGT------ACAACAT
>PST_2444(edd) Score=6.8 Pos=-38 [Pseudomonas stutzeri A1501]
tgGTTGT------ACAAaAT
# TF - HexR1: PST_0183
>PST_0183(hexR1) Score=5.6 Pos=-195 [Pseudomonas stutzeri A1501]
TTGTAGTATAACTACCG
>PST_0182(zwf) Score=5.6 Pos=-59 [Pseudomonas stutzeri A1501]
CGGTAGTTATACTACAA
>PST_3852(aceE) Score=5.6 Pos=-179 [Pseudomonas stutzeri A1501]
CTGTAGTTTTACTACTA
>PST_3852(aceE) Score=6.2 Pos=-128 [Pseudomonas stutzeri A1501]
TTGTAGTAAAACTACAG
# TF - BirA: PST_0763
>PST_3867(COG1040) Score=9 Pos=-21 [Pseudomonas stutzeri A1501]
CTGTCAACC--------------GGTTTACAA
>PST_3866(bioB) Score=9 Pos=-104 [Pseudomonas stutzeri A1501]
TTGTAAACC--------------GGTTGACAG
# TF - NrdR: PST_0834
>PST_1637(nrdA) Score=5.2 Pos=-202 [Pseudomonas stutzeri A1501]
ACACAACATATTGTGT
>PST_1729(topA) Score=5.7 Pos=-241 [Pseudomonas stutzeri A1501]
CCACTATATATAGCGG
>PST_3509(nrdD) Score=4.6 Pos=-58 [Pseudomonas stutzeri A1501]
TCACACCATATTGTGG
>PST_3509(nrdD) Score=4.4 Pos=-27 [Pseudomonas stutzeri A1501]
ACACTACATATGGTTA
>PST_1637(nrdA) Score=5.1 Pos=-392 [Pseudomonas stutzeri A1501]
CCCCTAGATGTTGGGT
# TF - SahR: PST_3925
>PST_3925(sahR) Score=7.2 Pos=-63 [Pseudomonas stutzeri A1501]
ATATCAAAACTTTTTGATAT
# TF - Zur: PST_0043
>PST_0044(znuA) Score=4.8 Pos=-37 [Pseudomonas stutzeri A1501]
GAGACGTTATTATGTACCAATTC
>PST_0043(zur) Score=4.5 Pos=-44 [Pseudomonas stutzeri A1501]
GAATTGGTACATAATAACGTCTC
>PST_2941(PA4838) Score=5.2 Pos=-113 [Pseudomonas stutzeri A1501]
CTTTTGTTATAACGTATCGCACC
>PST_3603(dksA2) Score=4.7 Pos=-90 [Pseudomonas stutzeri A1501]
TAAACGTTATGTTATAACTAATC
>PST_1798(rpmE2) Score=5.6 Pos=-51 [Pseudomonas stutzeri A1501]
CTATTGTTATGTTATAACATCAT
>PST_0827(zbp) Score=6 Pos=-41 [Pseudomonas stutzeri A1501]
AAGTTGTTATAACGTAACGTACC
# TF - LldR: PST_3335
>PST_3336(lldP) Score=5.9 Pos=-125 [Pseudomonas stutzeri A1501]
AATTGGTCTTACCACTT
>PST_3336(lldP) Score=5.2 Pos=-258 [Pseudomonas stutzeri A1501]
AAATGGTCTTACCAGTC
>PST_3335(lldR) Score=5.5 Pos=-161 [Pseudomonas stutzeri A1501]
AAGTGGTAAGACCAATT
>PST_3335(lldR) Score=4.5 Pos=-28 [Pseudomonas stutzeri A1501]
GACTGGTAAGACCATTT
# TF - PrpR: PST_2033
>PST_2033(prpR) Score=5.8 Pos=-13 [Pseudomonas stutzeri A1501]
ATTGTCGACAAT
>PST_2033(prpR) Score=4.8 Pos=-88 [Pseudomonas stutzeri A1501]
GGTGTCGACAAT
# TF - IscR: PST_3043
>PST_3043(iscR) Score=6.9 Pos=-4 [Pseudomonas stutzeri A1501]
ATAGTTGACTCAAATACTCGGGAAT
>PST_0755(erpA) Score=6.5 Pos=-76 [Pseudomonas stutzeri A1501]
ATAGTTGACCGGTTTTGTCAGGCAA
# TF - GlcC: PST_0430
>PST_0430(glcC) Score=6.4 Pos=-134 [Pseudomonas stutzeri A1501]
AACTGGTCCTACCAGTT
>PST_0431(glcD) Score=5.2 Pos=-222 [Pseudomonas stutzeri A1501]
AGCTGGTAGGACCAGTT
>PST_0431(glcD) Score=5.6 Pos=-115 [Pseudomonas stutzeri A1501]
AACTGGTAGGACCAGTT
>PST_0430(glcC) Score=6.2 Pos=-27 [Pseudomonas stutzeri A1501]
AACTGGTCCTACCAGCT
# TF - NtrC: PST_0349
>PST_0353(glnA) Score=4.9 Pos=-212 [Pseudomonas stutzeri A1501]
CGCACCATTAACGCGCA
>PST_0350(ntrB) Score=5.2 Pos=1 [Pseudomonas stutzeri A1501]
TGCACCTGTTTGGTGCG
>PST_0502(glnK) Score=4.8 Pos=-329 [Pseudomonas stutzeri A1501]
TGCACAAAAAATGAGCA
>PST_0502(glnK) Score=5.5 Pos=-296 [Pseudomonas stutzeri A1501]
CGCACCATTTTCGTGCG
>PST_0353(glnA) Score=4.6 Pos=-243 [Pseudomonas stutzeri A1501]
CGCACCAAAACAATGCG
# TF - FruR: PST_0987
>PST_0987(fruR) Score=5.5 Pos=-89 [Pseudomonas stutzeri A1501]
GCTGAAACGTTTCAGC
>PST_0988(fruB) Score=5.5 Pos=-105 [Pseudomonas stutzeri A1501]
GCTGAAACGTTTCAGC
# TF - ModE: PST_1348
>PST_1348(modE) Score=6.5 Pos=-168 [Pseudomonas stutzeri A1501]
CGCTATATACAAAACGATATAGCG
# TF - LexA: PST_1734
>PST_3329(recN) Score=5.7 Pos=-41 [Pseudomonas stutzeri A1501]
ACTGTATAAATAGCCAGC
>PST_1734(lexA) Score=5.5 Pos=-215 [Pseudomonas stutzeri A1501]
ACTGTATATAATCCCAGT
>PST_1734(lexA) Score=5.5 Pos=-196 [Pseudomonas stutzeri A1501]
ACTGTATAAAAGAACAGA
>PST_3169(PF07130) Score=5.3 Pos=-47 [Pseudomonas stutzeri A1501]
GCTGTACAAATAAACAGT
>PST_2810(ruvC) Score=5.4 Pos=-29 [Pseudomonas stutzeri A1501]
ACTGGATAAATAGACAGC
>PST_1508(recA) Score=5.6 Pos=-57 [Pseudomonas stutzeri A1501]
ACTGTCTACTTATACAGT
>PST_3169(yebG) Score=5.3 Pos=-47 [Pseudomonas stutzeri A1501]
GCTGTACAAATAAACAGT
>PST_3962(PSEEN2356) Score=5.5 Pos=-7 [Pseudomonas stutzeri A1501]
ACTGTATATGCAAACAGT
>PST_2108(PF08774) Score=5.7 Pos=-60 [Pseudomonas stutzeri A1501]
ACTGTATAAATAGCCAGC
>PST_1523(dinG) Score=5.4 Pos=-120 [Pseudomonas stutzeri A1501]
ACTGAAAATATATACAGC
>PST_4159(PF04055) Score=6 Pos=217 [Pseudomonas stutzeri A1501]
ACTGTATATATAAACAGC
>PST_2913(topB) Score=5.3 Pos=-184 [Pseudomonas stutzeri A1501]
ACTGTATGTCCATACAGA
>PST_2344(imuA) Score=5.7 Pos=24 [Pseudomonas stutzeri A1501]
ACTGTATCTATATACAGT
# TF - LiuR: PST_3221
>PST_3208(livG) Score=5.4 Pos=-70 [Pseudomonas stutzeri A1501]
GTTTACGTAAAGGTCATG
>PST_3208(livG) Score=5.2 Pos=-76 [Pseudomonas stutzeri A1501]
GTTATCGTTTACGTAAAG
>PST_3208(livG) Score=4.6 Pos=-99 [Pseudomonas stutzeri A1501]
CTTGCCGTATACGGAAAC
>PST_3211(aacS) Score=6.2 Pos=-98 [Pseudomonas stutzeri A1501]
CTTTACGTTAACGTAATC
>PST_3211(aacS) Score=4.6 Pos=-104 [Pseudomonas stutzeri A1501]
AGTTACCTTTACGTTAAC
>PST_3213(liuA) Score=6.5 Pos=-133 [Pseudomonas stutzeri A1501]
CTTTACGTTAACGTAAAG
# TF - PsrA: PST_1735
>PST_3860(acdH1) Score=4.7 Pos=-71 [Pseudomonas stutzeri A1501]
GTCGAAACGTATGTTTCAAA
>PST_3860(acdH1) Score=5.7 Pos=-58 [Pseudomonas stutzeri A1501]
TTTCAAACGCCTGTTTGACC
>PST_1735(psrA) Score=5.6 Pos=-32 [Pseudomonas stutzeri A1501]
TTTCAAACAGTTGTTTGTCT
>PST_1726(fadB) Score=5.7 Pos=-155 [Pseudomonas stutzeri A1501]
AATCAAACGGGCGTATGAAT
>PST_2241 Score=5.6 Pos=-146 [Pseudomonas stutzeri A1501]
ATTCAAACAAACGTTCGAAT
>PST_2605(etfB) Score=5.6 Pos=-323 [Pseudomonas stutzeri A1501]
ATACAAACGTTTGTTTGAAT
>PST_2607(etfD) Score=5.9 Pos=-130 [Pseudomonas stutzeri A1501]
ATTCAAACAAACGTTTGTAT
>PST_1572(rpoS) Score=4.8 Pos=-421 [Pseudomonas stutzeri A1501]
CCTCAAACGGTAGTTTGAAT
# TF - RutR: PST_2863
>PST_3175(upp) Score=5.3 Pos=-159 [Pseudomonas stutzeri A1501]
ACCTGACCGAACAGACTACT
>PST_2862(tsx) Score=5.5 Pos=-58 [Pseudomonas stutzeri A1501]
GCCTGACCGCTTGGACAACT
>PST_2862(tsx) Score=5.1 Pos=-224 [Pseudomonas stutzeri A1501]
AGCTGACGCATCGGTCAGGT
>PST_3090(pbuT3) Score=5.1 Pos=-63 [Pseudomonas stutzeri A1501]
TCCTGACCTTTCGGTCAACT
# TF - RutR3: PST_3101
>PST_3081(xdhA) Score=5.8 Pos=-211 [Pseudomonas stutzeri A1501]
AGTTGACCGAAAAGTCAGAT
>PST_3081(xdhA) Score=4.2 Pos=-234 [Pseudomonas stutzeri A1501]
CATTGACTTTTGAGTCAGGA
# RNA - yybP-ykoY
>PST_1115(COG2119) Score=43.6 Pos=-215 [Pseudomonas stutzeri A1501]
GCCGCCGTCCTTGGGGGAGTAGTCTCCGACGAGCGCCCTGCTCGTCCGGCATGCGTCAACACACTTGGTCCGCAGACCATGGCGCATGCGACCGGCCAGCCTAGCAATAGCGCATGGCCCGGTTTGACAAGACCCATGACATGTAC
# RNA - TPP
>PST_3816(thiC) Score=82.4 Pos=-204 [Pseudomonas stutzeri A1501]
GGCGTTCTTGTCGGGGTGCCTTGAAGCGAAGGCTGAGATCGGAAAGTTCCGGATCCCGTTGAACCTGATCAGGTTAAGGCCTGCGTAGGGAACAAGATGTCCTCGTCT
# RNA - SAH_riboswitch
>PST_3935(ahcY) Score=61 Pos=-110 [Pseudomonas stutzeri A1501]
CACCCGAGGGGCGCTGCAGCAGGTTCCAGAACCTGTCAGGCTCGGATGGGGCGTTTCCTCGAACGCATCAACGGCGCCCATTCGCAAC
# RNA - mini-ykkC
>PST_3492(ykkC3) Score=31.9 Pos=16 [Pseudomonas stutzeri A1501]
CGCCGCGGGACGACCCGGGGCGTGTCGAATCATGCGGGGACGGCCCTG
# RNA - ykkC-yxkD
>PST_2011(uctP) Score=92.4 Pos=-230 [Pseudomonas stutzeri A1501]
CGAAATAGCCGACTAGGGTTCCGACTCGCTCGCGAGTGGCTGGTCCGAGAGTTGGCGACCTCCAGTGAGGTTACACGGCGGGATAAAAGCCCGGGAGAA
>PST_2003(uctB2) Score=83.1 Pos=-152 [Pseudomonas stutzeri A1501]
CTTCAAGGAGAACTAGGGTTCCGGCTCACAGGGAGTGGGCGCTGGTCCGAGAGTTCTCCGGTCCCAGGGACGGGACTACACGGAGGGATAAAAGCCCGGGAGAC
# RNA - S15
>PST_3307(rpsO) Score=52.7 Pos=-61 [Pseudomonas stutzeri A1501]
GTCATGCCTCTTTATTAAACACGGGGTCAATCCCCGGCCTGTTCACTCAAGGAGCCCTACCATGGCACTGAGCGTTGAAGAAAAAGCCCAGATCGTTAACGAGTACAAGCAAGCTGAA
# RNA - Cobalamin
>PST_1289(btuB2) Score=105.7 Pos=-373 [Pseudomonas stutzeri A1501]
ACCTCCGCGTCGCCTCAGGTGCCCCCTGGCCTTGTGCCAGACGGGTGAAACAGGGAAGCCGGTCCATTCTCACGAAGATTCCGGCGCTGCCCCCGCAACGGTAGGCGAGTCGAGAAACCGCAACGGCCACTGTGCATGACGCATGGGAAGGCGCGGTTTCGGGATGCCGCAAGGCATACGCTCGCAAGCCCGGAGACCGGCCTGTCGCATTTCACTGACAGT
>PST_0846(btuB1) Score=98.5 Pos=-314 [Pseudomonas stutzeri A1501]
GCGTTTTCTTATCCGCCCAGGTGTGCACGACCGCAAGGTCCGCATTAAACGGGAAGCCGGTGCGCTCGAAGAGCAAGGCCGGCGCTGCCCCCGCAACGGTAATCGACCGCGATCCTCAGGAATCGCCGTCCGCTCGACAACCACTGTGTTCCGACATGGGAAGGTGAGCGTGATGCGTGTCGAAAGCCCGGAGACCGGCCTGACGGATTCGACTGGTG
# RNA - Glycine
>PST_4110(dadA) Score=61.8 Pos=-248 [Pseudomonas stutzeri A1501]
CGATGTGCTAGCGGGAGAGACTGCCGTCAGGGCAGCGCCGAAGGAGCAACCGCCCCGGAAACTCTCAGGCAAAAGGACCGCTACCA
>PST_4110(dadA) Score=46.7 Pos=-162 [Pseudomonas stutzeri A1501]
CCGCTGAAACTCTGAAGAGCCGCCCGGTTTTCGTCGCCGGGCGCACCGAAGGAGCAAGCGAGCCGTCACGCGCTCGTGAATCTCTCAGGTCCAGAACAGAGGGGGCGCC
# RNA - FMN
>PST_0836(ribE2) Score=63 Pos=-269 [Pseudomonas stutzeri A1501]
TGAGCACTTCGAGGAGGAGCACAACGCAGCATGCTCTGCGCGCAGTAGCTTTCAATCGCGTCTAGCCCGCGAGCGCTTGCTTCGGCAAGGTCAGCAGACCCGGTGTGATTCCGGGGCCGACGGTATAGTCCGGATGAGAGAGAGCGGGATA
# TF - GntR: PST_2198
>PST_2201(gntKZ) Score=4.5 Pos=-104 [Pseudomonas stutzeri A1501]
GTTTGATAGCGCTAACATCC
# TF - CueR: PST_3614
>PST_3613(copA) Score=5.6 Pos=-58 [Pseudomonas stutzeri A1501]
ACCTTGCCATAGGGTTAAGGT
>PST_3386(copZ2) Score=5.5 Pos=-65 [Pseudomonas stutzeri A1501]
ACCTTGCCGCTCTGGCAAGGT
>PST_2713(copZ2) Score=5.5 Pos=-67 [Pseudomonas stutzeri A1501]
ACCTTGCCATGGCGTCAAGGT
>PST_3612(copZ) Score=5.3 Pos=-58 [Pseudomonas stutzeri A1501]
ACCTTGCCAGGGTGGCAAGCT
# TF - MerR: PST_3431
>PST_3432(merT) Score=6.8 Pos=-61 [Pseudomonas stutzeri A1501]
ATTCCGTACTTTGGTACGGAGT
# TF - CadR-PbrR: PST_0663, PST_3417, PST_1620
>PST_0664(cadA) Score=6.2 Pos=-210 [Pseudomonas stutzeri A1501]
ACCCTGTAGTGGCTTTAGGGT
>PST_1619(czcD) Score=6.6 Pos=-57 [Pseudomonas stutzeri A1501]
ACCCTGTAGTTGCTACAGGGT
>PST_3416(czcD2) Score=5.9 Pos=-61 [Pseudomonas stutzeri A1501]
ACCTTGTAGTAGCTATAGGGC
# TF - PA1520: PST_3088
>PST_3099(PA0165) Score=4.8 Pos=-398 [Pseudomonas stutzeri A1501]
TTGTGCACAA
>PST_3092(PA1518) Score=4.6 Pos=-92 [Pseudomonas stutzeri A1501]
CTGTGTACAA
>PST_3090(PA1519) Score=4.7 Pos=-94 [Pseudomonas stutzeri A1501]
TTGTATACAA
>PST_3088(PA1520) Score=4.7 Pos=-225 [Pseudomonas stutzeri A1501]
TTGTATACAA
>PST_3088(PA1520) Score=4.8 Pos=-112 [Pseudomonas stutzeri A1501]
TTGTGCACAA
>PST_3090(PA1519) Score=4.8 Pos=-207 [Pseudomonas stutzeri A1501]
TTGTGCACAA
>PST_3092(PA1518) Score=4.7 Pos=-229 [Pseudomonas stutzeri A1501]
TTGTATACAA
>PST_3093(PA1517) Score=4.6 Pos=-137 [Pseudomonas stutzeri A1501]
TTGTACACAG
>PST_3093(PA1517) Score=4.7 Pos=0 [Pseudomonas stutzeri A1501]
TTGTATACAA
# TF - MetR: PST_2852
>PST_2223(metH) Score=4.2 Pos=-96 [Pseudomonas stutzeri A1501]
CCTGAATAATCTTCATG
>PST_2850(metE) Score=4.8 Pos=-73 [Pseudomonas stutzeri A1501]
CGTGAGTTTGTTTCATT
>PST_2852(metR) Score=4.4 Pos=-89 [Pseudomonas stutzeri A1501]
GATGAGCCTCGCTCATC
# TF - YdcR: PST_2731
>PST_2730(COG0348) Score=8.8 Pos=-97 [Pseudomonas stutzeri A1501]
ATCTGATCCGTATTT---------ATCTGAGTCTGTTAT
# TF - PhrR: PST_1965
>PST_1967(COG1090) Score=5.2 Pos=-85 [Pseudomonas stutzeri A1501]
TGTACATTCGAATAACCATGTATA
>PST_0951(PF04134) Score=5.2 Pos=-57 [Pseudomonas stutzeri A1501]
TGTACAGGATTATTGTTTTGTTCA
>PST_1966(COG3272) Score=5.3 Pos=-217 [Pseudomonas stutzeri A1501]
TATACATGGTTATTCGAATGTACA