# TF - NagR: XCC3412
>XCC3408(nixA) Score=5.6 Pos=-340 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GCTGATAACGTTGTCAGC
>XCC2887(nixD) Score=6 Pos=-355 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GTTGACAACGCTGTCAAC
>XCC3045(naxA) Score=5.4 Pos=-178 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GATGACAACGATGGCACT
>XCC0531(nixB) Score=5.7 Pos=-161 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GTTGACACCGATGTCATC
>XCC2943(nagK2) Score=6.2 Pos=-83 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATTGACAGCGTTGTCATC
>XCC2886(nagK2) Score=5.7 Pos=-81 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GCTGACAACGTTGTCTAC
# TF - FabR: XCC3880
>XCC3879(desC) Score=5.9 Pos=-31 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GATATACAACTGTATACA
>XCC3880(fabR2) Score=5.9 Pos=-62 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TGTATACAGTTGTATATC
# TF - BirA: XCC3938
>XCC0388(bioB) Score=8.4 Pos=-93 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CTGTAAACC----------------AGTTGACAG
>XCC0389(COG1040) Score=8.4 Pos=16 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CTGTCAACT----------------GGTTTACAG
# TF - NrdR: XCC0691
>XCC3986(nrdA) Score=4.6 Pos=-414 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TTCCCACATTATGTGT
>XCC3986(nrdA) Score=5.6 Pos=-382 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CCCCACTATCTTGGGG
# TF - Zur: XCC2685
>XCC0257(yciC) Score=5.6 Pos=-41 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GAGTTGTTATACAGTAACATTTC
>XCC2658(omr1) Score=5.4 Pos=-138 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GACGTGGAATAATATAACATCTT
>XCC1763(amiC) Score=5.5 Pos=-152 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CTAGTGTTACTTTATAACACTTG
>XCC2046(omr2) Score=4.7 Pos=-56 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATTACGTTATAATATATCGATAC
# TF - HutC: XCC1582
>XCC1581(hutI) Score=4.6 Pos=-39 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TCTATTGTATATACATATCA
>XCC1580(hutF) Score=4.4 Pos=-56 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TGATATGTATATACAATAGA
# TF - IscR: XCC2765
>XCC2765(iscR) Score=8.4 Pos=-44 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AAAGAGTACAATTTCGGTCCGCTTT
# TF - NagQ: XCC3414
>XCC3414(nagQ) Score=7.5 Pos=-34 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TTGGTACTATATTGGACCT
# TF - NtrC: XCC0189
>XCC0185(glnA) Score=6.1 Pos=-173 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TGCACCATTTTGGTGCA
>XCC0188(ntrB) Score=6.2 Pos=-23 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TGCACTAAATTGGTGCA
# TF - Fur: XCC1470
>XCC1414(fpr) Score=5.5 Pos=-73 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AAATGAGAGTTCATCTCATTT
>XCC4162(COG4773) Score=4.6 Pos=-31 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GGATAAGAATCGTTATCATTG
>XCC3518(fpvA) Score=5.2 Pos=-72 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TAATAATATTCATTCTCACTT
>XCC3216(fhuE) Score=6 Pos=-121 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AAATGTGAATCATTCCCATTA
>XCC0158(fpvA) Score=5.6 Pos=-167 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AAACGATAACGATTTACATTT
>XCC1834(feoA) Score=4.6 Pos=-35 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AATTGAGAACCATTCCTAACA
>XCC0481(bfd) Score=5 Pos=-73 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AATTGACACCTATTCTCGTTT
>XCC0482(bfr) Score=4.4 Pos=-80 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AACTGATCACGATTCGCGTTC
>XCC0767(hemP) Score=6.1 Pos=-2 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AAATGAGAATGGTTATTATTT
>XCC1391(fhuA) Score=5.2 Pos=-28 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATTTGATAACCATTCCCATTA
>XCC0767(hemP) Score=4.9 Pos=-26 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AAATGAGAATGGCTCTTGATC
>XCC2772(fhuA) Score=5.5 Pos=-263 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AAAGAAGAATGATTTGCATTT
# TF - LexA: XCC1721
>XCC1721(lexA) Score=7 Pos=-21 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TTAGTAGTAATACTACTAA
>XCC2963(umuD) Score=6.1 Pos=-69 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TTTTTAGTAATTTTGCTAA
# TF - LexA2: XCC1098
>XCC1098(lexA2) Score=6.9 Pos=-40 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GTGTACAAATGTACAC
# TF - PsrA: XCC1980
>XCC1980(psrA) Score=5.6 Pos=-37 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ACTCAAACAATCGTTTGATT
>XCC0518(aroQ) Score=5.5 Pos=-96 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AATCAAACGATTGTTTAAAA
# TF - VanR: XCC0803
>XCC0804(pcaH) Score=3.6 Pos=-90 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TTGGGATCCCAA
>XCC0803(vanR) Score=3.6 Pos=-158 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TTGGGATCCCAA
>XCC0804(pcaH) Score=4.3 Pos=-142 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TTTGGATCCCAA
>XCC0804(pcaH) Score=4 Pos=-247 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATGGGCTCCATT
>XCC0803(vanR) Score=4 Pos=-1 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AATGGAGCCCAT
>XCC0803(vanR) Score=4.3 Pos=-106 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TTGGGATCCAAA
# RNA - TPP
>XCC3319(thiC) Score=58.7 Pos=-214 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GCCGCCGAAGTGGGGGTACCACAGCACTGCTGCGGTTGAGATAGTCCCTTCGAACCTGATCCGGCTCATACCGGCGTAGGGAAGCTTCGTTAGATGCGCT
# RNA - FMN
>XCC0695(ribE) Score=101.2 Pos=-336 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AACGTCTTCAGGGCGGGGTGCGATTCCCCACCGGCGGTATGCATGCGCAAGCGTGTGAGCCCGCGAGCGCTTCGCTGCCGATCTCTCGCTGAGAGCACGGCGGTGAAGGTCAGCAGATCCGGTGCGATGCCGGGGCCGACGGTATAGTCCGGATGAAAGAAGACGGCCAA
# TF - HrcA: XCC1472
>XCC0522(groS) Score=7.1 Pos=-77 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CTGGCAGTCGTCACATACGAGTGCTAA
# TF - MntR: XCC2170
>XCC2171(mntH) Score=6.2 Pos=-50 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AGCATAGCACTTGCTATATC
>XCC2170(mntR) Score=6.2 Pos=-113 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GATATAGCAAGTGCTATGCT
# TF - SoxR: XCC2831
>XCC0300 Score=5.9 Pos=-48 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ACCTCAACCATGCTTTAGGT
>XCC2831(soxR) Score=5.9 Pos=-27 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GCCTCAACCAAGGTTGAGGT
# TF - XCC2209: XCC2209
>XCC2469(omp2) Score=5.1 Pos=-124 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CAGTGGAATCGATTTCAGCA
>XCC3814(bglX) Score=5.8 Pos=-27 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CCATGTAAACGTTTTCTCAA
>XCC2207(COG5368) Score=5.9 Pos=-31 [Xanthomonas campestris pv. campestris str. ATCC 33913]
AGATGTAATCGATTACACGA
>XCC2209(XCC2209) Score=5.5 Pos=-107 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATCTGTAAGCGTTTTCACAA
>XCC2209(XCC2209) Score=5.5 Pos=-61 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GTATGAAAACGCTTACAGTC
>XCC2135(ugpC) Score=5.8 Pos=-130 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATGTGAAAACGATTACATGT
>XCC4223(PF10947) Score=5.6 Pos=-33 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TCATGTAAACGCTTTCAATC
>XCC3510(COG3137) Score=5.5 Pos=-55 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TCATGAAATCGCTTTCACCT
# TF - FruR2: XCC2369
>XCC2369(fruR2) Score=6.9 Pos=-127 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TAGTGGGAACGTTCCCACGG
>XCC2370(fruB) Score=5.2 Pos=-165 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CACTGGGACCGTTCCCGCTC
>XCC2369(fruR2) Score=5.1 Pos=-17 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GAGCGGGAACGGTCCCAGTG
>XCC2370(fruB) Score=6.8 Pos=-55 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CCGTGGGAACGTTCCCACTA
# TF - XCC4129: XCC4129
>XCC4129(XCC4129) Score=6.5 Pos=-172 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TCATGTAAGCGCTTGCAGTT
# TF - ManR: XCC1507
>XCC1892(omp(Man)) Score=5.5 Pos=-231 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GCATTAGAACGATCTAATCG
>XCC1892(omp(Man)) Score=4.3 Pos=-118 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TCGTTGGATGGATACAAAGC
>XCC4222(omp(Man)-2) Score=5.6 Pos=-92 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GATTTGGATCGGTCCAAAGC
>XCC1507(manR) Score=6.2 Pos=-132 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TAATTGGATCGATCCAATCA
# TF - SuxR: XCC3356
>XCC3358(omp_suc) Score=7.1 Pos=-190 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CTTTGCAATCGATTGTAACG
>XCC3357(sut1) Score=7.1 Pos=-77 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CGTTACAATCGATTGCAAAG
# TF - MalR: XCC2464
>XCC2467(COG3408) Score=7 Pos=-159 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CCATGAATACGTATGCAGGG
>XCC2469(omp(Mal)) Score=6.3 Pos=-94 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CGTTGAATACGTATGCAGGC
>XCC2471(malZ) Score=6.7 Pos=-107 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CTATGAATACGTATGCACGG
>XCC2468(susB) Score=6.4 Pos=-103 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CCCTGCATACGTATTCATGG
>XCC0748(amy) Score=6.6 Pos=-164 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CAGTGAATACGTATGCACAG
# TF - XAC1548: XCC1500
>XCC0210(XAC0231) Score=5.3 Pos=-54 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CGGTGTACTACCTTACTACCACACCA
>XCC1500(XAC1548) Score=6.3 Pos=-299 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CGGTGTTATAGTTGAATACAAAACCA
# RNA - SAH_riboswitch
>XCC0752(ahcY) Score=40.8 Pos=-146 [Xanthomonas campestris pv. campestris str. ATCC 33913]
CCTCGTCGAGGGGCGCTGCGACCGGTACGGCAGATTCATCTGCCACCTGCACGAAAAGTGCGGGCAACAACGGCCAGGCTCGACAGGGATTTTTCGTGAAACGGCGCCCGGAATTG
# TF - MetR: XCC0315
>XCC0315(metR) Score=5.4 Pos=-19 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATGAATTCGGATCAT
>XCC0316(PF03358) Score=5.4 Pos=-105 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATGATCCGAATTCAT
# TF - HisR: XCC1807
>XCC1808(hisG) Score=7.3 Pos=-364 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TGTACTAACACGCTATTACA
>XCC1807(hisR) Score=7.3 Pos=-28 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TGTACTAACACGCTATTACA
# TF - XAC0737: XCC3386
>XCC3385(phzF) Score=9.4 Pos=-107 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATCTGTATTGG--------------------ATCTGTCCTGG
# TF - MlnR: XCC3617
>XCC3609(mdcA) Score=6.7 Pos=-56 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATAATTACGATGTAATTAC
>XCC3609(mdcA) Score=5.2 Pos=-45 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GTAATTACTTCGACATTAC
# TF - SamR: XCC1513
>XCC1513(samR) Score=6.3 Pos=29 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATCTCCATATCGCGATATAGAGAT
>XCC0739(metF2) Score=5.5 Pos=-57 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATGCATTCATCGCGATGAAGCGAT
>XCC0761(metK) Score=6.7 Pos=-33 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATCTTTTCATCCGAATTAAGGGAT
>XCC2857(metX2) Score=6.8 Pos=-248 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATCTTTCCATCCGCATGAAGAGAT
# TF - GulR: XCC3246
>XCC3245(kdgD) Score=5.6 Pos=-101 [Xanthomonas campestris pv. campestris str. ATCC 33913]
ATCGATTCAATTTATGTATCAAA
>XCC3246(gulR) Score=5.6 Pos=-219 [Xanthomonas campestris pv. campestris str. ATCC 33913]
TTTGATACATAAATTGAATCGAT
# TF - SdaR: XCC4225
>XCC4227(grtP) Score=5.1 Pos=-88 [Xanthomonas campestris pv. campestris str. ATCC 33913]
GCTTGGGTGTTTGCACAAAA