# TF - NiaR: SMU.331
>SMU.332(niaX) Score=6.3 Pos=-67 [Streptococcus mutans UA159]
AACTAGTGTCTTGACAGATGTA
>SMU.946(pnuC) Score=5 Pos=-74 [Streptococcus mutans UA159]
aAtataTGTCTTgACACaTGTA
# TF - CmbR: SMU.852
>SMU.930c(homR) Score=5 Pos=-110 [Streptococcus mutans UA159]
GCCATAAGAAAAAGTTATCAC
>SMU.932(tcyD) Score=5 Pos=-168 [Streptococcus mutans UA159]
GTGATAACTTTTTCTTATGGC
>SMU.930c(homR) Score=5.3 Pos=-175 [Streptococcus mutans UA159]
GCTATAAATTTTATTTATGAC
>SMU.932(tcyD) Score=5.3 Pos=-103 [Streptococcus mutans UA159]
GTCATAAATAAAATTTATAGC
>SMU.1942c(gshT) Score=4.6 Pos=-76 [Streptococcus mutans UA159]
GTGATAGAAATTATATAATAG
>SMU.459(tcyA) Score=5.8 Pos=-102 [Streptococcus mutans UA159]
GTGATAGAAAAATATTATCAC
>SMU.459(tcyA) Score=5 Pos=-80 [Streptococcus mutans UA159]
GTGATAGGAAAAAACTATTAT
>SMU.1942c(gshT) Score=6 Pos=-98 [Streptococcus mutans UA159]
GTGATAGAATTTTCTTATCAC
>SMU.873(metE) Score=4.6 Pos=-188 [Streptococcus mutans UA159]
GTTATAGATGAAAACTATAAC
>SMU.1675(metB) Score=4.3 Pos=-110 [Streptococcus mutans UA159]
CTTATAGTTTCTTTTTATAGC
# RNA - L10_leader
>SMU.957(rplJ) Score=77.6 Pos=-162 [Streptococcus mutans UA159]
AGGTTTTGAAAAACTGACCTAAGACAGCAGGGGAGCGTGCTCATAATATTCCTGCCGAGGCACAAAACGTAAACTGAAAAAACGTATTGTACTTTCGTGTCTGGGTTTGGGTGCGATTTTTTATTGCATTCAG
# RNA - TPP
>SMU.706c(thiT) Score=77.6 Pos=-111 [Streptococcus mutans UA159]
TAAATATCACAAGGAGTGCTAACCTTAGCTGAGATTGCATTTGCAAAATCCTATGGACCTGATCTAGTTAATACTAGCGTGGGAATGTGATTCGTTTCATGA
# RNA - FMN
>SMU.1703c(ribU) Score=81.8 Pos=-323 [Streptococcus mutans UA159]
CTTCAGGGCAGGGTGAGATTCCCGACCGGCGGTGACAAAGGCGATGATTTTTCAACGAGATTAGATAGTAAGTCGAAGATGATATTAGACTATATCAAGATGAGCTAATGATGCGTCAGAGAAAAGATTCCTTTTGAAGTCCGCGAGCGCAAGCTGATGTGGTGAAATTCCACAACCGACAGTAAAGTCTGGATGGGAGAA
# RNA - PyrR
>SMU.1224(pyrK) Score=66.9 Pos=-131 [Streptococcus mutans UA159]
AATAACCTTTAATTTAGTCCAGAGAGGCTGTCAAGGGAAATCAAGATTAACAGGCAGAGGTACAATCTGCCCACTTTTTTGTGTAACCTTGCCAGTTAGTTGGTAAGGTTTTTTTTCAT
>SMU.856(pyrR) Score=70.9 Pos=-133 [Streptococcus mutans UA159]
ATTCCTTTAACACTGTCCCGTGAGGCAGGCAAGGAGCGACAAAGAAAAAAGTGCAGGAACAACTGTACTTATATTTTGTGAAATCTCCTTGTATGAGGAGATTTTTTCTTATT
# RNA - Glycine
>SMU.1175(glyP) Score=65 Pos=-195 [Streptococcus mutans UA159]
GACGGACTTCTGGAGAGACCTACTAGGCGCCGAAGGGGCAAGGCTGTTTGCTCAAACTCTCAGGCAAAAGGACAGAAAAGAAAAAAA
# RNA - L13_leader
>SMU.169(rplM) Score=55.8 Pos=-98 [Streptococcus mutans UA159]
GTATTGTTTGCCCCATTTGAAAGGCCCCGGAACCCTTCAAATAATTTGTGGACCGGAACATCCACATTGTAAACATAAAGA
# RNA - L19_leader
>SMU.1288(rplS) Score=28.8 Pos=-56 [Streptococcus mutans UA159]
ACGGCTAATCCGCTGAGACAGAGCACTTATGATTAGTAA
# RNA - L20_leader
>SMU.697(infC) Score=77.6 Pos=-142 [Streptococcus mutans UA159]
GAGAAAAGCAGAAGTGAGAACTTCTCGCCTTGCGACTTAAAGTTGTCTGGCCCAACATGTTAAAGTTCCTGTGGAATATTATGTGTATACGGGCTTGATTTGTCAGGTCCGTTTTTGTTTTTCTCAAA
# RNA - L21_leader
>SMU.846(rplU) Score=52.6 Pos=-109 [Streptococcus mutans UA159]
ATCCTGTGCAACCGCACGAAAATCGCTTTTAAGCAGCTTTCGTAGCTCACGATTTAGGCGAGTCTTCACGGAGGAAT
# RNA - S15
>SMU.154(rpsO) Score=19.7 Pos=-59 [Streptococcus mutans UA159]
TTGGTTCTAGGATTCGCCAAAACCTAGGACTCAGATTAAGGATAAAAAGGAGAACTATTATGGCAATCTCAAAAGAGAAAAAAAATGAAATTATTAAACAATACGCGCGTCATGACGG
# TF - Rex: SMU.1053
>SMU.360(gap) Score=4.7 Pos=-81 [Streptococcus mutans UA159]
AAGTTAATCTTTTCACAA
>SMU.464(pncB) Score=4.3 Pos=-265 [Streptococcus mutans UA159]
GTGTTATAATAGTAACAA
>SMU.1053(rex) Score=4.4 Pos=-117 [Streptococcus mutans UA159]
TTGTTATAAAAAAAACTA
>SMU.1247(eno) Score=4.6 Pos=-49 [Streptococcus mutans UA159]
TTGTGGTATGATTAACAT
>SMU.361(pgk) Score=4.7 Pos=-47 [Streptococcus mutans UA159]
TTGTGATATAATTATCAT
>SMU.99(fba) Score=4.6 Pos=-61 [Streptococcus mutans UA159]
AAGTGATAAAATAAACAA
>SMU.1115(ldh) Score=4.4 Pos=-81 [Streptococcus mutans UA159]
TAGTGACTTTCTTAACAA
>SMU.148(adhE) Score=5.3 Pos=-130 [Streptococcus mutans UA159]
TTGGGAAAAAATTCACAA
>SMU.148(adhE) Score=4.8 Pos=-96 [Streptococcus mutans UA159]
TTGTGAAAAGGGTTACAA
>SMU.148(adhE) Score=4.8 Pos=-74 [Streptococcus mutans UA159]
AAGTGAAGAAAATCACAA
>SMU.1053(rex) Score=4.5 Pos=-58 [Streptococcus mutans UA159]
ATGTTGCATTTTTCACAA
>SMU.1410(frdC) Score=4.1 Pos=-57 [Streptococcus mutans UA159]
ATGTGATGTTTTTCACTT
# RNA - preQ1-II
>SMU.1545c(queT) Score=95.4 Pos=-95 [Streptococcus mutans UA159]
ATATGCTATACTGGATAAGTTGTCTGACAACCCTTGGTGCTTATTTCCCTTTCACCAAGCATATTACAAACGGTAGATCCGTTAAAGGAGAAACAATG
# RNA - yybP-ykoY
>SMU.723(atcL) Score=60.3 Pos=-145 [Streptococcus mutans UA159]
GAAGATTATCAAGGGAGTAGCTAGCGGTTTTGCCGTGATGTTGTCGTCAATCCGAAACTGTTTTCCGGCAACATATTAAATAGCGAGACTTGTTTAATTATTAA
# RNA - T-box(Ala)
>SMU.649(COG4894) Score=52.1 Pos=-199 [Streptococcus mutans UA159]
TAATTATCCTGTCAAGAATAATTTTTCTCTCATTTGCTTCAGAAAAATAGCGGTTGATGTGAGCTATGCAAATAGAAAAATTTGGCTGCTTGATTGATAAACAGAATAACATAATAAGAATGACAAGTTCATTGAATGAAGGTGGTACCGCGGTTTCTTCGCCCTTCTTAC
# RNA - T-box(Asn)
>SMU.1822(aspS2) Score=75.7 Pos=-244 [Streptococcus mutans UA159]
ATTAAATATGAAGAGAAGTAGAGTAAGCCTTGCGACTTGTCCAGAGAGCATCCGCTGCTGAGAGTGATGTCTAGTCAAAAGAGCCTGAAGAACATGCTTTAATCTCCTATCTTAAATATAGGCGTTTTATTCACGTTACGAATCAAGAGGTTATCAATTTATTGATGACAAATAACAGTGGCACCACGGTCTTCGTCTGTTTA
# RNA - T-box(Gly)
>SMU.445(glyQ) Score=60.2 Pos=-415 [Streptococcus mutans UA159]
TGTTAAGAAAGAGAGTTTTGTGGCGTTTCTGCAGCGAACCTGAGAGAGTGTAAGTCAGGTGAAACAAAATAAAGGACTGGCACTTTCTCTTGGCTAATAGCCAAGCTAACAATCAGATAAATGAAGTAATAAATTAGGGTGGAACCGCGTTTCAAACGCCCCTATGTC
# RNA - T-box(His)
>SMU.1273(hisC) Score=70.1 Pos=-277 [Streptococcus mutans UA159]
TAGAAAAGCGATGAGAGAAAAAAATCTAAGAAACAAAACAGAGAGTATGGGAAGCTGAAAACATACAAAAAGCTTAGATAACACATTCTTGAGTGCGGGTGCCAAATCGTAGGAAAGTAGTGCTCGACGGGTTATTCACGTTACGAATAGGAGTTTCAAACTCCCTGAGGGTAGTCTTGGTGACAGGCTACTGAATGAAGGTGGAACCACGTGTGTGTCAGCGTCCTTGCA
# RNA - T-box(Ile)
>SMU.558(ileS) Score=24.1 Pos=-260 [Streptococcus mutans UA159]
ATTAAGGTGGTACCACGAGCTTTCGTCCTTTG
# RNA - T-box(Phe)
>SMU.1512(pheS) Score=50.8 Pos=-232 [Streptococcus mutans UA159]
TAAAAGTCTATGAGATTAGTAGCTTTATGGAAATTTGACAGGGAATGCGGGGCGTGACTGGAAACCCGCTGGATGAAAGTTTAGTGAATTCACTCAGAAAGAAAGACTTAAATAATTAAGGTCTAGTCATACTAGATAAAAACGGATGGTACCGCGTGTCAACGCTCCGCTT
# RNA - T-box(Ser)
>SMU.1886(serS) Score=68.8 Pos=-377 [Streptococcus mutans UA159]
TAAGAACAACGGATAAGTAGGTCCTTTTCTTTTGCAGAAAGTCTGCGGCAGCTGCGAGCAGATAGAGTGATTGACCGAAATTCTACCGTTATAGATGATTCCATCCAGTTTCCAAGACTGAATGAGACAATCTTTATTAAATGATTATCGTAATTAAGAGCACAGTCATTGTGAAGCTGGATGGAACCGCGCCCAAGCGCTCCAGCAAG
# RNA - T-box(Thr)
>SMU.1587c Score=80.8 Pos=-237 [Streptococcus mutans UA159]
TATAATAATTTTTGGAGACAAGTTAGGTGTGTTCGGTCTTAAAGAGAGCACTTGGCAGCTGAGAAAGTGCAGGCCTATCATTTAATACTACTCCCTAATTTTTTATGTAAACATAAAACGGTGGCTACGTTAGAGCCGATTCGAGGTGTGAGTCTTTTGACTTGCATAAATGAAGGTGGAACCACGTTGCGACGTCCTTTTA
# RNA - T-box(Trp)
>SMU.531(tyrA) Score=82.2 Pos=-287 [Streptococcus mutans UA159]
CGTAAGAAATAAATTAGAAAAGTACCAAACCTTTTGTTTTCAGGGAGTCTGTGGGTATTGTGAACAGGCAGCAGAATTTTGGGAAGTGGGCTGATTTTTAGAAAGCGAAGATAAACAATATTCTTCCGGTGAGCACACCTTATCGTGCAACTCCTTGTTAGAGGAGATTAAGATAACGGGGAAAGACTATTGGTTCCCGTTAATTGAGGTGGCACCGTGTTAGCTAGATTTAACGCCCTCACACA
# RNA - T-box(Val)
>SMU.1773c(SMU.1773c) Score=33.4 Pos=-274 [Streptococcus mutans UA159]
CTGATAAAATAAGGTCATTCAGAGGTGTTTTGAATTCCATTTGTTATAGGAAGCGGCGTTACTGGGAAATCCGCACAAATGTCGAAACTGGTTGCTGATGTGATTTTTTGAAATAAAATGAGTTGCGGGTCTAGCCCGAAACTGGGTGGTACCGCGGAGATCATAGAATGACATTCGTCCCTGTC
# TF - PflR: SMU.491
>SMU.491(pflR) Score=6 Pos=-85 [Streptococcus mutans UA159]
ACGAAACAAAATCAATTACGA
>SMU.490(pflA) Score=5.1 Pos=-66 [Streptococcus mutans UA159]
TCGTAATTGATTTTGTTTCGT
>SMU.493(pflB) Score=5.1 Pos=-41 [Streptococcus mutans UA159]
AAGAAATTTAATATATTACGA
# TF - NagR: SMU.1065c
>SMU.636(nagB) Score=4.7 Pos=-30 [Streptococcus mutans UA159]
CTATTTGTATAGACCGATTA
>SMU.636(nagB) Score=6 Pos=-50 [Streptococcus mutans UA159]
AAATTGGTCTATACCTTATA
>SMU.435(nagA) Score=6.4 Pos=-43 [Streptococcus mutans UA159]
AATTTGGTATATACCATTTA
>SMU.1187(glmS) Score=5.4 Pos=-148 [Streptococcus mutans UA159]
CAAAAAGACTATACCAATTT
>SMU.1187(glmS) Score=5.8 Pos=-71 [Streptococcus mutans UA159]
TTATTAGACTATACCAATTA
# TF - NrdR: SMU.1923c
>SMU.2074(nrdD) Score=5.2 Pos=-92 [Streptococcus mutans UA159]
TATCAATATATTGTGT
>SMU.2074(nrdD) Score=5.5 Pos=-61 [Streptococcus mutans UA159]
CCACAATATATTGATT
>SMU.669c(ndrH) Score=4.5 Pos=-104 [Streptococcus mutans UA159]
GTACTATATTTTGTGT
>SMU.669c(ndrH) Score=5.3 Pos=-136 [Streptococcus mutans UA159]
ACACTATATCTTGTGG
# TF - CopR: SMU.424
>SMU.424(copR) Score=5.4 Pos=-31 [Streptococcus mutans UA159]
GTATCTACAAATGTAGATGA
>SMU.424(copR) Score=5.8 Pos=-63 [Streptococcus mutans UA159]
TTGTTGACAAATGTAGACAA
# TF - ArgR: SMU.2093, SMU.584, SMU.2097
>SMU.334(argG) Score=4.1 Pos=-110 [Streptococcus mutans UA159]
AATATATAAAAACAAATA
>SMU.2098(argS) Score=4 Pos=-109 [Streptococcus mutans UA159]
AATGAATAAAATTTATTA
>SMU.2093(argR1) Score=4.6 Pos=-172 [Streptococcus mutans UA159]
AAAGTATAAAAATCAATT
>SMU.334(argG) Score=4.7 Pos=-38 [Streptococcus mutans UA159]
TTTGAATAATTATCAAAA
>SMU.334(argG) Score=5.5 Pos=-71 [Streptococcus mutans UA159]
TTTGAATAATTATGCAAT
>SMU.663(argC) Score=5.3 Pos=-55 [Streptococcus mutans UA159]
TATGAATAAATATACGAT
>SMU.663(argC) Score=4.2 Pos=-11 [Streptococcus mutans UA159]
AGTGAATAAGTATGAAAG
>SMU.563(argF) Score=4.8 Pos=-49 [Streptococcus mutans UA159]
TATGAATAAAAATGTAAA
>SMU.563(argF) Score=4.9 Pos=-28 [Streptococcus mutans UA159]
AGAGTATAAAAATTCAAG
# TF - MalR: SMU.1566
>SMU.2047(ptsG) Score=6.1 Pos=-45 [Streptococcus mutans UA159]
AAATGCAAACGTTTGCATGA
>SMU.1568(malE) Score=6 Pos=-66 [Streptococcus mutans UA159]
TTTCGCAAACGATTGCATAA
>SMU.1565(malM) Score=6.4 Pos=-61 [Streptococcus mutans UA159]
TTATGCAAACGATTGCGTTA
>SMU.1566(malR) Score=5.8 Pos=-200 [Streptococcus mutans UA159]
TTATGCAATCGTTTGCGAAA
# TF - GlnR: SMU.363
>SMU.363(glnR) Score=5.8 Pos=-76 [Streptococcus mutans UA159]
ATGTCAGGAAATATGACAT
>SMU.1658(nrgA) Score=5.6 Pos=-203 [Streptococcus mutans UA159]
ATGTTAAAAAACATAACAT
>SMU.913(gdhA) Score=5.7 Pos=-130 [Streptococcus mutans UA159]
ATGTTATTTTTTATAACAT
>SMU.1658(nrgA) Score=6.3 Pos=-39 [Streptococcus mutans UA159]
ATGTTATATTATATAACAT
>SMU.670(citB) Score=6.1 Pos=-97 [Streptococcus mutans UA159]
ATGTTATAAAACATAACAT
>SMU.1519(gluQ) Score=5.5 Pos=-47 [Streptococcus mutans UA159]
ATGTTAGAAAAGCTAACAA
>SMU.806c(glnP) Score=5.7 Pos=-106 [Streptococcus mutans UA159]
ATGTTATATTTCCTTACAT
# TF - NmlR: SMU.677
>SMU.1867c(adhC) Score=6.4 Pos=-61 [Streptococcus mutans UA159]
ACTTGACTTAGAGTCCACT
>SMU.677(nmlR) Score=6.6 Pos=-66 [Streptococcus mutans UA159]
ACTTGACTTGAAGTAGACT
# TF - FabT: SMU.1745c
>SMU.1746c(fabM) Score=5.7 Pos=-93 [Streptococcus mutans UA159]
ACTTTGATTTTCAAACT
>SMU.1742c(fabK) Score=5.4 Pos=-185 [Streptococcus mutans UA159]
AGTTTGACATTCAAATC
>SMU.1742c(fabK) Score=6.1 Pos=-50 [Streptococcus mutans UA159]
AGTTTGACTGTCAAATT
>SMU.1745c(fabT) Score=6 Pos=-42 [Streptococcus mutans UA159]
ACTTTGATAGTCAAAGT
# TF - ScrR: SMU.1844
>SMU.1843(scrB) Score=6.4 Pos=-112 [Streptococcus mutans UA159]
TATGTCAATCGTTTTACATA
>SMU.1841(scrA) Score=6.4 Pos=-103 [Streptococcus mutans UA159]
TATGTAAAACGATTGACATA
# TF - CcpA: SMU.1591
>SMU.877(agaL) Score=4.6 Pos=-50 [Streptococcus mutans UA159]
TTTAAAACGGTTACAA
>SMU.1843(scrB) Score=4.9 Pos=-164 [Streptococcus mutans UA159]
TTGAAAGCGTTTTTTT
>SMU.799c(SPy1339) Score=4.3 Pos=-109 [Streptococcus mutans UA159]
TAGGAAACGCTTCCAA
>SMU.1824c(codY) Score=4.6 Pos=-112 [Streptococcus mutans UA159]
ATAAAAGGGCTTTCAT
>SMU.112c(fruR2) Score=4.5 Pos=-75 [Streptococcus mutans UA159]
ATGATAGCACTTTCAT
>SMU.1405c(cas9) Score=4.1 Pos=-189 [Streptococcus mutans UA159]
ATAGAAACGCTTACAG
>SMU.1013c(citN) Score=5 Pos=-115 [Streptococcus mutans UA159]
TTTTAAGCGCTTTCAT
>SMU.1013c(citN) Score=3.9 Pos=-160 [Streptococcus mutans UA159]
TTTAAAATGTTTTTTT
>SMU.1568(malE) Score=3.8 Pos=-189 [Streptococcus mutans UA159]
TTGTTAACCTTTTATA
>SMU.308(sorD) Score=4.2 Pos=-56 [Streptococcus mutans UA159]
TTGTGAGCGCTTTATA
>SMU.575c(lrgA) Score=4.5 Pos=-66 [Streptococcus mutans UA159]
TTGAAAACGTTTTACA
>SMU.1088(apbE) Score=4.6 Pos=-50 [Streptococcus mutans UA159]
CAGAAAACGCTATCAT
>SMU.2127(gabD) Score=4.8 Pos=-57 [Streptococcus mutans UA159]
TTGAAATCGGTTTCAA
>SMU.396(glpF2) Score=4.8 Pos=-100 [Streptococcus mutans UA159]
AAGTAAACGTTTTAAT
>SMU.395(pepX) Score=4.8 Pos=-30 [Streptococcus mutans UA159]
ATTAAAACGTTTACTT
>SMU.1692(pflA) Score=4 Pos=-28 [Streptococcus mutans UA159]
AGAAAAACGTTTACAG
>SMU.1843(scrB) Score=4.9 Pos=-57 [Streptococcus mutans UA159]
AAGAAAACGTTTACTA
>SMU.307(pgi) Score=4.9 Pos=-85 [Streptococcus mutans UA159]
ATGAAAGCGTTTTATA
>SMU.1126(coaA) Score=4.5 Pos=-52 [Streptococcus mutans UA159]
TTGAAACGGTTTTCAA
>SMU.1077(pgm) Score=4.7 Pos=-55 [Streptococcus mutans UA159]
ATGAAAGCGGTTAAAT
>SMU.402(pfl) Score=4.9 Pos=-113 [Streptococcus mutans UA159]
AAGAAATCGCTTACAA
>SMU.127(acoA) Score=4.1 Pos=-51 [Streptococcus mutans UA159]
TAGAAAGCGGTTCAAA
>SMU.674(ptsH) Score=4.3 Pos=-60 [Streptococcus mutans UA159]
TTGTAAGGGTTATCAT
>SMU.870(fruR) Score=4.4 Pos=22 [Streptococcus mutans UA159]
GTGTAAACGATTTCAA
>SMU.1591(ccpA) Score=4.8 Pos=-72 [Streptococcus mutans UA159]
TTGAAAGTGTTTTCAA
>SMU.1191(pfk) Score=3.9 Pos=-103 [Streptococcus mutans UA159]
CTGAAAACGCTTTTTC
>SMU.291(tkt2) Score=4.3 Pos=-53 [Streptococcus mutans UA159]
AAGTAAGCGTTTTATG
>SMU.78(sacC) Score=4.7 Pos=-165 [Streptococcus mutans UA159]
AAGATAGCGCTTACAA
>SMU.1534(atpE) Score=4.1 Pos=-161 [Streptococcus mutans UA159]
TTAAAAGCGTCTTCTA
>SMU.611(rheA) Score=3.9 Pos=-127 [Streptococcus mutans UA159]
TTGAAAACGATCATTT
>SMU.2038(treP) Score=4.8 Pos=-77 [Streptococcus mutans UA159]
TTGTAATCGTTTACAA
>SMU.546(typA) Score=4.3 Pos=-95 [Streptococcus mutans UA159]
TTTAAAACATTTACAT
>SMU.1592(pepQ) Score=4.8 Pos=-106 [Streptococcus mutans UA159]
TTGAAAACACTTTCAA
>SMU.1978(ackA) Score=4.3 Pos=-28 [Streptococcus mutans UA159]
TCGTAAACGATTTCAT
>SMU.1601(bglA) Score=3.9 Pos=-46 [Streptococcus mutans UA159]
TTGAAATTGTTTGCTA
>SMU.179(yieF) Score=4.7 Pos=-78 [Streptococcus mutans UA159]
ATGTAAACGCTTGCTT
>SMU.2047(ptsG) Score=4.5 Pos=-43 [Streptococcus mutans UA159]
ATGCAAACGTTTGCAT
>SMU.2040(treR) Score=4.8 Pos=-112 [Streptococcus mutans UA159]
TTGTAAACGATTACAA
>SMU.91(ropA) Score=4.6 Pos=-161 [Streptococcus mutans UA159]
ATGAAAAGGATTTCAT
>SMU.89c(yrhG) Score=4.6 Pos=-92 [Streptococcus mutans UA159]
ATGAAATCCTTTTCAT
>SMU.270(sgaT) Score=4.2 Pos=-72 [Streptococcus mutans UA159]
TTGTTAGCATTTTCAA
>SMU.500(raiA) Score=4.5 Pos=-58 [Streptococcus mutans UA159]
ATGAAAGCGATATAAT
>SMU.1600(celB) Score=4.8 Pos=-55 [Streptococcus mutans UA159]
TTGTAAGCGCTTTTTT
>SMU.1424(pdhD) Score=5.2 Pos=-58 [Streptococcus mutans UA159]
TAGAAAGCGTTTTCAA
>SMU.1424(pdhD) Score=4.2 Pos=-95 [Streptococcus mutans UA159]
TTGAAATCCCTATCAA
>SMU.1877(manL) Score=4.4 Pos=-105 [Streptococcus mutans UA159]
ATGTAAACGTTTTACA
>SMU.1389(pck) Score=4.4 Pos=-65 [Streptococcus mutans UA159]
ATAACAGCGTTTACAT
>SMU.541(yvaA) Score=3.9 Pos=-58 [Streptococcus mutans UA159]
AGGCAAGCGCTTGCAA
>SMU.113(fruK2) Score=4.5 Pos=-69 [Streptococcus mutans UA159]
ATGAAAGTGCTATCAT
>SMU.1841(scrA) Score=4.9 Pos=-154 [Streptococcus mutans UA159]
TAGTAAACGTTTTCTT
>SMU.1841(scrA) Score=4.9 Pos=-47 [Streptococcus mutans UA159]
AAAAAAACGCTTTCAA
>SMU.876(msmR) Score=4.6 Pos=-73 [Streptococcus mutans UA159]
TTGTAACCGTTTTAAA
# TF - PipR: SMU.2134
>SMU.2134(pipR) Score=5.9 Pos=-119 [Streptococcus mutans UA159]
TTTATACATTCTGTCTAAA
>SMU.2134(pipR) Score=5.8 Pos=-42 [Streptococcus mutans UA159]
TTTAGACACTGTGTATAAT
>SMU.2133c(pip) Score=5.9 Pos=-31 [Streptococcus mutans UA159]
TTTAGACAGAATGTATAAA
>SMU.2133c(pip) Score=5.8 Pos=-108 [Streptococcus mutans UA159]
ATTATACACAGTGTCTAAA
# TF - SgaR: SMU.289
>SMU.290(sgaG) Score=5.7 Pos=-100 [Streptococcus mutans UA159]
AACACAAGCTTGTGTT
>SMU.270(sgaT) Score=5.3 Pos=-101 [Streptococcus mutans UA159]
AACACTTGTATGTGTG
# TF - MtaR: SMU.1225
>SMU.1173(metY) Score=6.3 Pos=-66 [Streptococcus mutans UA159]
TATAGTTTATAACTATA
>SMU.1487(metE2) Score=6.5 Pos=-100 [Streptococcus mutans UA159]
TATAGTTTAAAACTATA
>SMU.572(folD) Score=4.6 Pos=-93 [Streptococcus mutans UA159]
TATAATATTTAAATATA
>SMU.1466(metA) Score=5.2 Pos=-68 [Streptococcus mutans UA159]
TATATTTGATAACTATA
>SMU.1466(metA) Score=5.3 Pos=-102 [Streptococcus mutans UA159]
TATAGTTGGAACCTATA
>SMU.1936c(COG1912) Score=5.4 Pos=-110 [Streptococcus mutans UA159]
TATAGGTAATAACTATA
>SMU.873(metE) Score=5.6 Pos=-186 [Streptococcus mutans UA159]
TATAGATGAAAACTATA
>SMU.873(metE) Score=6.1 Pos=-155 [Streptococcus mutans UA159]
TATAGCTTAAAACTATA
>SMU.1941(metQ) Score=6.1 Pos=-100 [Streptococcus mutans UA159]
TATAGTTTTTAGCTATA
# TF - YjdR: SMU.921
>SMU.921(yjdR) Score=6.5 Pos=-52 [Streptococcus mutans UA159]
ATAGTTTTCATGAGAACTAT
# TF - PerR: SMU.593
>SMU.569(feoA) Score=4.8 Pos=-118 [Streptococcus mutans UA159]
TTATAATGTTTCTCA
>SMU.540(mgrA) Score=5.5 Pos=-57 [Streptococcus mutans UA159]
TTAGAATCGTTCTAA
>SMU.593(perR) Score=4.7 Pos=-157 [Streptococcus mutans UA159]
TTTGAATGATTTTTA
>SMU.635(pcl) Score=5.4 Pos=-37 [Streptococcus mutans UA159]
TTGTAATCATTCTAA
>SMU.182(mntC) Score=4.8 Pos=-26 [Streptococcus mutans UA159]
TTATATTACTTATAA
# TF - SPy1285: SMU.1193
>SMU.1193(SPy1285) Score=6.6 Pos=-52 [Streptococcus mutans UA159]
TTGTATTATATATATAACACAA
>SMU.862(SPy0836) Score=5.9 Pos=-112 [Streptococcus mutans UA159]
TTGTATTATAGCCTTAAGACAA
>SMU.1041(SAG0280) Score=5.4 Pos=-46 [Streptococcus mutans UA159]
TTGTATGATTTCAGTAGTATAA
# TF - AdcR: SMU.1995c
>SMU.1302(adcA) Score=5.8 Pos=-29 [Streptococcus mutans UA159]
AATTAACCAGTTAAGT
>SMU.1995c(adcR) Score=5.9 Pos=-32 [Streptococcus mutans UA159]
AATTAACTGGTTAATT
# TF - MntR: SMU.186
>SMU.182(mntB) Score=6.4 Pos=-57 [Streptococcus mutans UA159]
AAAATTAACTTGACTTAATTTT
# TF - PurR: SMU.356
>SMU.1073(fhs) Score=5.1 Pos=-90 [Streptococcus mutans UA159]
AAATCCGAACATT
>SMU.29(purC) Score=4.8 Pos=-109 [Streptococcus mutans UA159]
AAATGCGAACGAT
>SMU.29(purC) Score=4.7 Pos=-16 [Streptococcus mutans UA159]
AAAGGCGAACAAT
>SMU.48(purD) Score=3.5 Pos=-122 [Streptococcus mutans UA159]
ACTCCCGAACAAA
# TF - TreR: SMU.2040
>SMU.2040(treR) Score=5.6 Pos=-99 [Streptococcus mutans UA159]
CAAATTTGTTGGCAAGTTGT
>SMU.2038(treP) Score=5.6 Pos=-94 [Streptococcus mutans UA159]
ACAACTTGCCAACAAATTTG
# TF - HrcA: SMU.80
>SMU.1955(groS) Score=7 Pos=-46 [Streptococcus mutans UA159]
TTAGCACTCAGTATATTGGAGTGCTAA
>SMU.80(hrcA) Score=7.2 Pos=-59 [Streptococcus mutans UA159]
TTAGCAGTCGTCTGTTAAGAGTGCTAA
>SMU.80(hrcA) Score=7.5 Pos=-143 [Streptococcus mutans UA159]
TTAGCACTCAAGCAGAAAGAGTGCTAA
# TF - GalR: SMU.885
>SMU.885(galR) Score=6.1 Pos=-63 [Streptococcus mutans UA159]
AAAATTTTACTAAATTTAT
>SMU.886(galK) Score=6.2 Pos=-81 [Streptococcus mutans UA159]
AAAATTTTAGTAAAAATAT
# TF - HomR: SMU.930c
>SMU.930c(GALLO_1277) Score=5.2 Pos=-110 [Streptococcus mutans UA159]
GCCATAAGAAAAAGTTATCAC
>SMU.932(tcyD) Score=5.2 Pos=-168 [Streptococcus mutans UA159]
GTGATAACTTTTTCTTATGGC
>SMU.932(tcyD) Score=6.1 Pos=-103 [Streptococcus mutans UA159]
GTCATAAATAAAATTTATAGC
>SMU.1675(metB) Score=4.9 Pos=-110 [Streptococcus mutans UA159]
CTTATAGTTTCTTTTTATAGC
>SMU.930c(GALLO_1277) Score=6.1 Pos=-175 [Streptococcus mutans UA159]
GCTATAAATTTTATTTATGAC
>SMU.873(metE) Score=5.4 Pos=-188 [Streptococcus mutans UA159]
GTTATAGATGAAAACTATAAC
# RNA - THF
>SMU.600c(folT) Score=69.2 Pos=-146 [Streptococcus mutans UA159]
GCACAGAGTAGATGATTCGCGTTAAGTGTGTGTGAATGGGATGTCGTCACACAACGAAGCCATAAGCGCGGTGAATCATTGCATCCGCTGTT
# TF - BirA: SMU.1578
>SMU.1827(bioY2) Score=8.7 Pos=-48 [Streptococcus mutans UA159]
ATAGTTAAC----------------GTTAACTAA
# TF - NigR: SMU.105
>SMU.100(nigB) Score=5.8 Pos=-102 [Streptococcus mutans UA159]
AATATGGAACGTTCCATGTA
>SMU.100(nigB) Score=4.7 Pos=-37 [Streptococcus mutans UA159]
GAAATTGAACGTTCAATATT
# TF - GutR: SMU.309
>SMU.308(gutF) Score=9 Pos=-80 [Streptococcus mutans UA159]
AAAAAAG-----CTTAATT
# TF - SAG1910: SMU.124
>SMU.125(SDEG_0249) Score=6.1 Pos=-41 [Streptococcus mutans UA159]
TATTACTATTTAGTGATA
>SMU.124(SAG1910) Score=5.5 Pos=-33 [Streptococcus mutans UA159]
TAACACTAATTAGTAGTA
>SMU.260(ytjD) Score=5.4 Pos=-59 [Streptococcus mutans UA159]
TGTCACTAATTAGTAGTA
# TF - CelR: SMU.1599
>SMU.1600(celB) Score=5.3 Pos=-92 [Streptococcus mutans UA159]
TTCCGTTTTCAATACGGAAA
# TF - MtlR: SMU.1184c
>SMU.1185(mtlA) Score=6.6 Pos=-149 [Streptococcus mutans UA159]
TTTGGCAAAACTTTTGTGCCAAA
# TF - TagR: SMU.112c
>SMU.112c(tagR) Score=6.5 Pos=-27 [Streptococcus mutans UA159]
AGAAAAATTTTTCT
>SMU.113(tagK) Score=6.5 Pos=-115 [Streptococcus mutans UA159]
AGAAAAATTTTTCT
# TF - CodY: SMU.1824c
>SMU.70(thrC) Score=5.2 Pos=-59 [Streptococcus mutans UA159]
AATTGTCTGATAATT
>SMU.1824c(codY) Score=5.4 Pos=-75 [Streptococcus mutans UA159]
AATTTTCTGACAATT
>SMU.365(gltB) Score=5.3 Pos=-108 [Streptococcus mutans UA159]
AATTTTCAGAATTTT
>SMU.231(ilvB) Score=5.5 Pos=-42 [Streptococcus mutans UA159]
AATTTTTTGAAAATT
>SMU.1658(nrgA) Score=5.5 Pos=-85 [Streptococcus mutans UA159]
AATTTTTAGAAAATT
>SMU.255(oppA1) Score=5.3 Pos=-36 [Streptococcus mutans UA159]
AATTTTCAGATTATT
>SMU.676(gapN) Score=5.3 Pos=-89 [Streptococcus mutans UA159]
AATTTTCTGAATTTT
>SMU.1203(ilvE) Score=5.3 Pos=-83 [Streptococcus mutans UA159]
AATTTTCAGAATTTT
>SMU.913(gdhA) Score=5.6 Pos=-68 [Streptococcus mutans UA159]
AATATTCAGAAAATT
>SMU.1109c(SMU.1109) Score=5.3 Pos=-105 [Streptococcus mutans UA159]
AATTTTCTGAAAATA
>SMU.1273(hisC) Score=5.1 Pos=-310 [Streptococcus mutans UA159]
AATATTCAGAATTTT
>SMU.1656(serC) Score=5.3 Pos=-50 [Streptococcus mutans UA159]
AAAATTCTGAAAATT
>SMU.1384(leuA) Score=5.4 Pos=-246 [Streptococcus mutans UA159]
ATTTTTCAGAAAATT
>SMU.1301c(ubiE) Score=5.1 Pos=-65 [Streptococcus mutans UA159]
TATTTTCAGAATATT
>SMU.1990(rpoB) Score=5.3 Pos=-84 [Streptococcus mutans UA159]
AAAATTCTGAAAATT
>SMU.1309c(gldA2) Score=5 Pos=-154 [Streptococcus mutans UA159]
AATCTTCTGAATATT
>SMU.1669(livK) Score=5.3 Pos=-66 [Streptococcus mutans UA159]
AATATTCAGATAATT
>SMU.784(aroA) Score=5.2 Pos=-61 [Streptococcus mutans UA159]
AATTTTCTAAAATTT
>SMU.1748(thrA) Score=5.3 Pos=-53 [Streptococcus mutans UA159]
AATTTTCTGAATTTT
>SMU.1595(cah) Score=5.1 Pos=-136 [Streptococcus mutans UA159]
AAAATTCTGAATATT
>SMU.63c(SMU.63c) Score=5.3 Pos=-139 [Streptococcus mutans UA159]
AATTTTCTGAATTTT
>SMU.1175(dagA) Score=4.7 Pos=-291 [Streptococcus mutans UA159]
AATTTTCAGAAAAGA
>SMU.363(glnR) Score=5.1 Pos=-39 [Streptococcus mutans UA159]
AATTTTCAGAATATA
>SMU.1519(gluQ) Score=5.1 Pos=-101 [Streptococcus mutans UA159]
AATTTTCTGATAATA
# TF - FruR: SMU.870
>SMU.870(fruR) Score=5.6 Pos=-25 [Streptococcus mutans UA159]
TGGTAGAAATTGCTTGACAG
>SMU.870(fruR) Score=5.3 Pos=-35 [Streptococcus mutans UA159]
TGGTAGAATTTGGTAGAAAT
# TF - CtsR: SMU.2030
>SMU.1955(groS) Score=6.9 Pos=-91 [Streptococcus mutans UA159]
TTTTTCTTGACTATTTTTGACCAA
>SMU.562(clpE) Score=6.6 Pos=-74 [Streptococcus mutans UA159]
TAAAGTTTGACCATTATTGACCAT
>SMU.1672(clpP) Score=6.8 Pos=-68 [Streptococcus mutans UA159]
AAATATTTGACCTTTTTTGACCAA
# TF - PdxR: SMU.953c
>SMU.953c(pdxR) Score=9.2 Pos=-61 [Streptococcus mutans UA159]
TATTGTA------------------TACAATA
>SMU.954(pdxK) Score=9.2 Pos=-68 [Streptococcus mutans UA159]
TATTGTA------------------TACAATA
# TF - LacR: SMU.1498
>SMU.1496(lacA) Score=6 Pos=-57 [Streptococcus mutans UA159]
ACTAAAGAA-AACGAAAAC
# TF - YwzG: SMU.1704
>SMU.1704(ywzG) Score=6.8 Pos=-33 [Streptococcus mutans UA159]
TATATAAAATATTTATATA
# TF - MleR: SMU.135
>SMU.135(mleR) Score=5 Pos=-82 [Streptococcus mutans UA159]
ATAAAAAATACTTAT
# TF - SMU640c: SMU.640c
>SMU.640c(SMU640c) Score=8.4 Pos=-34 [Streptococcus mutans UA159]
AAATTGTAG---AGACAATTT
>SMU.641(SMU.641) Score=8.4 Pos=-114 [Streptococcus mutans UA159]
AAATTGTCT---CTACAATTT