# TF - SphR: all4503
>all3651(purF) Score=7.7 Pos=-119 [Nostoc sp. PCC 7120]
TTTAATAT-(3)-GTTAAAGA-(3)-GTTAAGAC
>alr5291(phoA1) Score=10.4 Pos=-229 [Nostoc sp. PCC 7120]
GTTAACCT-(3)-TTTATATT-(3)-CTTAACTT
>all4021(fbp) Score=7 Pos=-136 [Nostoc sp. PCC 7120]
CGTAAACT-(3)-GATTTCTT-(3)-TTTATCTA
>alr5259(SYNPCC7002_A2263) Score=8.7 Pos=-329 [Nostoc sp. PCC 7120]
GTAAAACT-(3)-TTTATTTA-(3)-CTTAATTT
>all1758(rsbU) Score=7.5 Pos=-49 [Nostoc sp. PCC 7120]
ATTTATTA-(3)-GTCAATCT-(3)-ATTAACCC
>all0129(rpaA) Score=7.3 Pos=-101 [Nostoc sp. PCC 7120]
TTTATGTT-(3)-TTTAAAAT-(3)-TTTTATAA
>all3822(SYNPCC7002_A0979) Score=8.6 Pos=-149 [Nostoc sp. PCC 7120]
CTTAATTT-(3)-CTTAAGTA-(3)-CTCAAATT
>alr4975(alr4975) Score=7.6 Pos=-10 [Nostoc sp. PCC 7120]
ATTAATTA-(3)-TGTTACCT-(3)-ATTTATAT
>alr2234(phoD) Score=9.6 Pos=-275 [Nostoc sp. PCC 7120]
ATTAACCT-(3)-CTTAGTCA-(3)-ATTAATTT
>all0207(phoD) Score=9.3 Pos=-98 [Nostoc sp. PCC 7120]
ATTAACCC-(3)-GATAACTC-(3)-CTTTACTT
>all0911(pstS) Score=10.8 Pos=-105 [Nostoc sp. PCC 7120]
CTTAACTT-(3)-GTTTACCT-(3)-CTTAACTT
>all4575(pstS) Score=8 Pos=-324 [Nostoc sp. PCC 7120]
TTTTATCT-(3)-CTTTTATT-(3)-CTTTTTTT
# TF - Fur: all1691
>all4365(chlH) Score=2.9 Pos=-272 [Nostoc sp. PCC 7120]
GTTTTTTATTTTTTTCATC
>all4365(chlH) Score=3 Pos=-232 [Nostoc sp. PCC 7120]
AATATTAATTTTTCTTTAC
>alr5154(psaA) Score=3.4 Pos=-177 [Nostoc sp. PCC 7120]
ATTTTGAATTATTGTTAAA
>alr0950(coxB) Score=3.7 Pos=-134 [Nostoc sp. PCC 7120]
TTTACTCAAGATTATTAAT
>alr2803(nifJ) Score=3.8 Pos=-92 [Nostoc sp. PCC 7120]
ATTTTTAATCAGTATTAAT
>alr3808(dpsA) Score=3.5 Pos=-204 [Nostoc sp. PCC 7120]
GTTTAGAAATTATTGCAAT
>alr2514(coxB) Score=3 Pos=-190 [Nostoc sp. PCC 7120]
AgTTAaAAagtTaaTaAgT
>all4001(isiA) Score=4.8 Pos=-161 [Nostoc sp. PCC 7120]
ATTAAGAATCTTTTTCAAT
>alr3727(psbA) Score=3.7 Pos=-105 [Nostoc sp. PCC 7120]
TTTAGTAATATTAATTAAT
>alr4592(psbA) Score=4.1 Pos=-28 [Nostoc sp. PCC 7120]
ATAAATAATTAATCGCAAT
>asl0884(fdx) Score=3.5 Pos=-90 [Nostoc sp. PCC 7120]
ATTCTTAATTTTTTGTAAT
>alr3155(SYNPCC7002_G0061) Score=4.1 Pos=-98 [Nostoc sp. PCC 7120]
ATTACGAATTAATATAAAT
>all3903(cce_4396) Score=4.6 Pos=-47 [Nostoc sp. PCC 7120]
TTTAATATAAATTGTCAAT
>all2367(all2367) Score=3.2 Pos=-181 [Nostoc sp. PCC 7120]
TATTGTAATATCTTTTAAT
>alr2405(isiB) Score=5 Pos=-235 [Nostoc sp. PCC 7120]
ATTGAAATAAATATTCAAT
>all1691(fur) Score=5.2 Pos=-94 [Nostoc sp. PCC 7120]
TTTAATAAATATTCTCAAT
>all1692(sigC) Score=3.5 Pos=-320 [Nostoc sp. PCC 7120]
AATAAACATAATTTTTACT
>all2158(fhuA) Score=4.6 Pos=-62 [Nostoc sp. PCC 7120]
ATTAAGAATTATTAGCAGT
>alr2175(fhuE) Score=4.4 Pos=-120 [Nostoc sp. PCC 7120]
GTTAATAATCTTTCGCAAT
>alr2626(fhuE) Score=4.7 Pos=-106 [Nostoc sp. PCC 7120]
TTTGATATTAATTACTAAT
>all2586(fecC) Score=4.6 Pos=-100 [Nostoc sp. PCC 7120]
TCTTATATTAATTCTCAAT
>all2586(fecC) Score=5 Pos=-32 [Nostoc sp. PCC 7120]
AATGACTATATTTTTCAAT
>all2237(pchR) Score=5.1 Pos=-40 [Nostoc sp. PCC 7120]
TTTGAGAAAGTTTATCTAT
>all2235(fecB) Score=3.5 Pos=12 [Nostoc sp. PCC 7120]
TTTTATTATCATATTCAAC
>all1101(fhuA) Score=3.8 Pos=-238 [Nostoc sp. PCC 7120]
ATTAATATTAAATCCTAAT
>all4924(fhuE) Score=5.5 Pos=-32 [Nostoc sp. PCC 7120]
ATTGAGAATTTTTATCTAT
>all5047(exbB) Score=4.7 Pos=-102 [Nostoc sp. PCC 7120]
TTTGATAATAATTTGCATC
>alr2184(pchR) Score=5.1 Pos=-39 [Nostoc sp. PCC 7120]
ATTGAGAAATAATATTATT
>alr2185(fhuE) Score=4.3 Pos=-69 [Nostoc sp. PCC 7120]
TTTGCAAAAAATTATTAAC
>alr2211(fhuA) Score=2.9 Pos=-272 [Nostoc sp. PCC 7120]
ATTTATTTAATTATTTAGT
>all2580(pchR) Score=5.5 Pos=-48 [Nostoc sp. PCC 7120]
ATTGAGAAATAATATCATT
>alr2174(pchR) Score=5.6 Pos=-96 [Nostoc sp. PCC 7120]
ATTGATAAATACTATCATT
# TF - LexA: alr4908
>alr0088(ssb) Score=5.1 Pos=-28 [Nostoc sp. PCC 7120]
AGTACTTATGTACT
>alr4908(lexA) Score=4.8 Pos=-47 [Nostoc sp. PCC 7120]
AGTACTAATGTTCT
>all3272(recA) Score=4.6 Pos=-66 [Nostoc sp. PCC 7120]
AGTATATCTGTTCT
>all0854(SYNPCC7002_A0856) Score=4.4 Pos=-46 [Nostoc sp. PCC 7120]
ACTACACTTGTATT
>all4790 Score=4 Pos=-45 [Nostoc sp. PCC 7120]
CGTACATTTGTACC
# TF - NrtR: alr2484
>alr2482(pncB) Score=6.4 Pos=-53 [Nostoc sp. PCC 7120]
TTATGGTAAATTCTACCATAA
>all4673(nadA) Score=6 Pos=-64 [Nostoc sp. PCC 7120]
TTTTGGTAAAAACTACTATAA
# TF - NtcA: alr4392
>all4968(gor) Score=4.1 Pos=-48 [Nostoc sp. PCC 7120]
AATAACAACTGTTACA
>alr1827(icd) Score=3.4 Pos=-6 [Nostoc sp. PCC 7120]
TGAAATATGTACAACA
>alr0992(amt1) Score=4.7 Pos=-50 [Nostoc sp. PCC 7120]
TGTAACTAAGTATACA
>alr0990(amt1) Score=4.7 Pos=-250 [Nostoc sp. PCC 7120]
TGTATTAACTAATACA
>asr0064(SYNPCC7002_A0076) Score=3.7 Pos=-107 [Nostoc sp. PCC 7120]
CGTATAGCAAAATACA
>alr4308(SYNPCC7002_A2395) Score=3.9 Pos=-64 [Nostoc sp. PCC 7120]
GGTAGTCGGAGTTACA
>alr3982(SYNPCC7002_A1954) Score=4.6 Pos=-250 [Nostoc sp. PCC 7120]
TGTAGTGATAGCTACA
>asl2329(gifA) Score=4.7 Pos=-78 [Nostoc sp. PCC 7120]
CGTAGCATAAGATACA
>alr2328(glnA) Score=4.8 Pos=-142 [Nostoc sp. PCC 7120]
TGTAACAAAGACTACA
>all2319(glnB) Score=3.8 Pos=-214 [Nostoc sp. PCC 7120]
AGTTACACAGACTACA
>all1127(ndh) Score=4.7 Pos=-146 [Nostoc sp. PCC 7120]
TGTAGCTTAAATTACT
>all4312(nrrA) Score=4.5 Pos=-75 [Nostoc sp. PCC 7120]
AGTAACAAAGACTACA
>alr4392(ntcA) Score=3.7 Pos=-151 [Nostoc sp. PCC 7120]
GGTATCATTATGAACA
>alr4392(ntcA) Score=3.7 Pos=-111 [Nostoc sp. PCC 7120]
AGTATAGGAAAGTACA
>all0602(ntcB) Score=4.5 Pos=-80 [Nostoc sp. PCC 7120]
TGTAACAAAATCTACC
>all0602(ntcB) Score=4.7 Pos=-21 [Nostoc sp. PCC 7120]
TGTAATTAAGGCTACA
>all1327(SYNPCC7002_A0264) Score=4.3 Pos=-52 [Nostoc sp. PCC 7120]
CGTAGTGTATGTTACA
>all2327(apcF) Score=4.8 Pos=-233 [Nostoc sp. PCC 7120]
TGTAGTCTTTGTTACA
>all1691(fur) Score=4.1 Pos=-218 [Nostoc sp. PCC 7120]
TGTAGCTTGAGATTCA
>alr1690(alr1690) Score=3.6 Pos=-91 [Nostoc sp. PCC 7120]
TGTGAATATAGAAACA
>alr2514(coxB) Score=3.5 Pos=-291 [Nostoc sp. PCC 7120]
AGAAGTAGAAGCTACT
>all4001(isiA) Score=3.7 Pos=-37 [Nostoc sp. PCC 7120]
AGTATTTCTGGCAACA
>alr1524(rbcL) Score=3.6 Pos=-32 [Nostoc sp. PCC 7120]
AGTAAAAAGAGTGACA
>alr4344(gltS) Score=3.5 Pos=-265 [Nostoc sp. PCC 7120]
TGGAAAAATTAAAACA
>all1258(psbZ) Score=3.4 Pos=-161 [Nostoc sp. PCC 7120]
TGTTACAAAAATTAGG
>alr1911(nifJ) Score=3.2 Pos=-281 [Nostoc sp. PCC 7120]
TGAATTTGATGTAACC
>alr4156(ndhF) Score=4 Pos=-260 [Nostoc sp. PCC 7120]
TGTCTTATAAAATACA
>alr0052(trxA) Score=3.7 Pos=17 [Nostoc sp. PCC 7120]
AGTTACAGATTCTACT
>asr3935(hanA) Score=3.6 Pos=-279 [Nostoc sp. PCC 7120]
GGTATTTTTTCCTACT
>all1951(urtA) Score=4.3 Pos=-116 [Nostoc sp. PCC 7120]
AGTATCAAAAATAACA
# TF - NtcB: all0602
>all3333(nrtA) Score=4.4 Pos=-135 [Nostoc sp. PCC 7120]
ATGCAATTTTTACAA
>all0602(ntcB) Score=3.9 Pos=-31 [Nostoc sp. PCC 7120]
ATGCCGTAAATGTAA
>asr3847(psbL) Score=4.2 Pos=-41 [Nostoc sp. PCC 7120]
ATGCAGTTTATTCAA
>asl0883(psbM) Score=4.3 Pos=-257 [Nostoc sp. PCC 7120]
ATGCGGTACTTGTAT
>alr0607(nirA) Score=4.8 Pos=-562 [Nostoc sp. PCC 7120]
ATGCAGAAAACGCAT
# TF - Zur: all2473
>all4723(thrS2) Score=5.9 Pos=-28 [Nostoc sp. PCC 7120]
ATGATAACGATTCTCATTATTTA
>all4725(hemB2) Score=5.7 Pos=-31 [Nostoc sp. PCC 7120]
ATGATAATGGTTATCAATCTTGT
>all1751(yciC2) Score=5 Pos=-44 [Nostoc sp. PCC 7120]
GTGATAATGATTATCCGTATGGT
>all0833(znuA) Score=6.2 Pos=-110 [Nostoc sp. PCC 7120]
ATGAGAATGAGAATTATTATAAT
>all0833(znuA) Score=5 Pos=-80 [Nostoc sp. PCC 7120]
TGTACAATAAGTATCATTGTCAA
>alr4028(omp) Score=5.9 Pos=-122 [Nostoc sp. PCC 7120]
GTGATAATAATAATCATTATCTA
>all3515(all3515) Score=5.4 Pos=-52 [Nostoc sp. PCC 7120]
CTGATTATGATAATCATTATCGG
>alr1197(alr1197) Score=4.4 Pos=-29 [Nostoc sp. PCC 7120]
AACTGCATGAAAATGATTATCAT
>alr3242(alr3242) Score=4.3 Pos=-260 [Nostoc sp. PCC 7120]
ATGATAATCATTATCAAAAAATG
>alr3242(alr3242) Score=5.6 Pos=-266 [Nostoc sp. PCC 7120]
GTAAACATGATAATCATTATCAA
>alr1197(alr1197) Score=6.1 Pos=-23 [Nostoc sp. PCC 7120]
ATGAAAATGATTATCATTTAAAA
# TF - SufR: all2491
>all2491(sufR) Score=5.9 Pos=-101 [Nostoc sp. PCC 7120]
TAAAACAACATCGATGTTGTTTAA
>all2491(sufR) Score=5.7 Pos=-56 [Nostoc sp. PCC 7120]
ATTAACAACAACAATGTTGTCAAA
>alr2492(sufB) Score=5.2 Pos=-193 [Nostoc sp. PCC 7120]
TTTGACAACATTGTTGTTGTTAAT
>alr2492(sufB) Score=6 Pos=-148 [Nostoc sp. PCC 7120]
TTAAACAACATCGATGTTGTTTTA
# TF - Crp: alr0295
>all1439(Cyan7425_4795) Score=3.1 Pos=-343 [Nostoc sp. PCC 7120]
GATGAAATGGATCGCA
>all2561(ackA) Score=4.4 Pos=-44 [Nostoc sp. PCC 7120]
AATGATATAGCTCACA
>all5062(gap2) Score=4.1 Pos=-1 [Nostoc sp. PCC 7120]
TGTGATTAGAGTCGCA
>all1210(cce_0244) Score=4.2 Pos=-54 [Nostoc sp. PCC 7120]
GTTGATTTAATTCATA
>all2491(sufR) Score=3.7 Pos=-42 [Nostoc sp. PCC 7120]
TGTTGTCAAAGTCAAA
>alr2514(coxB) Score=3.1 Pos=-222 [Nostoc sp. PCC 7120]
TCTGGAATAATTCCCC
>all1517(nifB) Score=3.1 Pos=-299 [Nostoc sp. PCC 7120]
ACTGCTATAAATCTTA
>all1436(nifX) Score=4.3 Pos=21 [Nostoc sp. PCC 7120]
AGTGACAGAATTCATA
>all5062(gap2) Score=3.8 Pos=-56 [Nostoc sp. PCC 7120]
TATGATTGGGGTCAAA
>alr1320(cupS) Score=4.3 Pos=-62 [Nostoc sp. PCC 7120]
TGTGATAAAAATTAAA
>alr1320(cupS) Score=4.2 Pos=-141 [Nostoc sp. PCC 7120]
TTTGATAATTATCATA
>all3570(ppa) Score=3.7 Pos=-160 [Nostoc sp. PCC 7120]
TGTGATATTTTTCCAC
# TF - CcmR: all0862
>alr4156(ndhF3) Score=5.9 Pos=-245 [Nostoc sp. PCC 7120]
ATAGATTTTTGTCTAT
>alr1320(cupS) Score=4.4 Pos=34 [Nostoc sp. PCC 7120]
ATAGTTTTAAAACTCT
>all0862(ccmR) Score=5.8 Pos=-146 [Nostoc sp. PCC 7120]
ATAGATTTTTATCTAT
>all0862(ccmR) Score=4.9 Pos=-72 [Nostoc sp. PCC 7120]
CTAGTCTTATATCTAT
>all0862(ccmR) Score=5.8 Pos=-285 [Nostoc sp. PCC 7120]
ATAGATTTTTATCTAT
>all2134(sbtA) Score=4.6 Pos=-191 [Nostoc sp. PCC 7120]
ATAGAATTTTGGCTCT
>all2134(sbtA) Score=4.8 Pos=-173 [Nostoc sp. PCC 7120]
ATAAATATTGATCTAT
# TF - HrcA: alr4044
>alr1896(groEL2) Score=10.2 Pos=-59 [Nostoc sp. PCC 7120]
TTAGCACTC---------GAGTGCTAA
>all4757(SYNPCC7002_A0107) Score=10.2 Pos=-166 [Nostoc sp. PCC 7120]
TTAGCACTC---------GAGTGCTAA
>alr3661(groES) Score=10.2 Pos=-45 [Nostoc sp. PCC 7120]
TTAGCACTC---------GAGTGCTAA
# TF - PedR: asl2551
>all2740(slr1957) Score=4.3 Pos=-157 [Nostoc sp. PCC 7120]
AAGCATGAATACTA
>alr5050(ndhD2) Score=4.5 Pos=-23 [Nostoc sp. PCC 7120]
AAGTATTTTTGCTT
>alr0348(ndhD) Score=4.2 Pos=-160 [Nostoc sp. PCC 7120]
GAGTATTTATTCCT
>alr0348(ndhD) Score=4.1 Pos=-119 [Nostoc sp. PCC 7120]
GAGTATAAATTCCT
>alr0348(ndhD) Score=4.3 Pos=-59 [Nostoc sp. PCC 7120]
AAGTAACAATTCCT
>alr0782(rpe) Score=4.2 Pos=-263 [Nostoc sp. PCC 7120]
AAGCATCAATACCG
>asl2551(pedR) Score=4.5 Pos=-194 [Nostoc sp. PCC 7120]
AAGTATATTTAATT
>asl2551(pedR) Score=4.6 Pos=-33 [Nostoc sp. PCC 7120]
AAGTACATATACCA
>alr3441(chlB) Score=3.7 Pos=-56 [Nostoc sp. PCC 7120]
AAGCACTTATAGTC
>all5076(chlN) Score=3.7 Pos=-7 [Nostoc sp. PCC 7120]
AAGCAAAATGACCA
# TF - SmtB: alr0831
>all7621 (deprecated)(smtB) Score=6.4 Pos=-85 [Nostoc sp. PCC 7120]
AACAATTGAACAACTATTCAATTGTA
>alr7622 (deprecated)(alr7622) Score=6.4 Pos=13 [Nostoc sp. PCC 7120]
TACAATTGAATAGTTGTTCAATTGTT
# RNA - TPP
>all0982(thiC) Score=59.1 Pos=-105 [Nostoc sp. PCC 7120]
ACATCCATGCTAGGGGTGCTTGCACTAACAGGCTGAGATTACACCCTTAACACCTGAGACTGGGTAATACCAGCGAAGGGAAGCTGTTTATTGAGGGA
# RNA - Cobalamin
>alr4027(cfrX) Score=61.7 Pos=-546 [Nostoc sp. PCC 7120]
TTTTTCAATATCAACTCGGTTCTGGTGGGGATCAGCCATCAGAGGTAAGGGGGAAAGTCCGGTGTAAATCCGGCGCTGTCCCGCAACTGTAATGGGGCTTATGCCTCAAAGTCAGAATGCCCGCCGAAAGTACAACAAATTCTTA
>all1781(cfrX) Score=34.4 Pos=-195 [Nostoc sp. PCC 7120]
TACCATTAAATAAATATTCGGTTCTGGTGGGGAGCAGTCACCAGAGGTAACGGGGAAAGTATACCTGCAATCTTTCGTAGGTGAACGGTGTAAGTCCGGCGCTGTCCCGCAACTGTGAAGGAAAGAAAACTCTTGTAACTTTCCCAGTCAGAACGCCCGCCGAAATTGACGATTCTCAA
>all0456(cobG-cbiC) Score=33 Pos=-109 [Nostoc sp. PCC 7120]
TGGTAGATTACTAGAACTTGGTGTTGGGAAACTCCGGTGCGATTCCGGGGCTGTGCCGCAGCTGTGATGAAAAGTCCCAAGAATTTCTCTTGTAACTTTCCGAGTCAGAATGCCAATTCCAAGAGTTAGCTG
# RNA - yybP-ykoY
>alr1698(COG2119) Score=48.2 Pos=-201 [Nostoc sp. PCC 7120]
TCTGATAAGAAGGGGAGTAGCTGCTGGCAAAAGCCAGTACATCTGAATCAACATACTGGCGATGAGCCTGGTTCAGGTGACAACTAGAAAATATTTGGAAGCGAGACCTTCACTAAGTTCAC
# RNA - ydaO-yuaA
>all3036(tauC) Score=63.8 Pos=-322 [Nostoc sp. PCC 7120]
TCGAGTAAGTCAGCCTAATCCAACCCACCATAGTATTTAAGGTTGGAGCGGAGGAACCAATTTGTGGGGCGTATCTCACAGAGAGTGTCAACTAAAGAGTCAAGAGTTAAACATTAAATCTAGCTAAATACTGAACTCAGAACTCATTACTCAGCACTCGCCAGAGAGGGGCATCTCTCAGCCCTAGCCCGTCAGCTAACTTCGTAGGCATTGAGAGGAGACTGA
>all3034(PF00582) Score=47.8 Pos=-273 [Nostoc sp. PCC 7120]
CTTTAGTGGGTAGCCTAATTCAAATTAAGTTTGCAATCATTTGGAACGGAGGAACCATGTTATGGGGCGCATCTTGCAGAGAGTAGCTAACCTAGAGTAAACAGTCAAGAGTAACCAAGTATTAAACTCAGCACTCATTACTCATTACTCCGCACTCTTAAAGAGAGACACCTTCCAGTCTTAGCCCGTCAGCTAACTCCGTCGGCAATGGAAGGAACC
>alr3370(COG0438) Score=73 Pos=-289 [Nostoc sp. PCC 7120]
AAATCAGTCAGCCTAATCTTAATTGCCCCAAACATTGAGGCAATTAAAGAGCGGAGGAACCAAAAATGGGGCGTATTTTGGATTATCCAAAAAGGATATCTCTCAGTCCTAGCCCGTCAGCTAACTTCGTCGGCATTGAGAGGAGATTGAAC
# RNA - L10_leader
>alr5302(rplJ) Score=73.4 Pos=-225 [Nostoc sp. PCC 7120]
AAACTAAATATGCAAAGCCGGAGACAGCAGGTGCTAACAGCTTAAACACCCTGCCGAGGTAAAAGCTCTCTTACTCAATGTGACGTGAAAAATAATGCGTCGCTTTAGTAATCAGAGTCTTGAGACTAAACCCCGGCTGAGATAGTCGGGGTTTATTGTTGTACCCTG