# TF - CymR: CAC2236
>CAC0102(metY) Score=5 Pos=-77 [Clostridium acetobutylicum ATCC 824]
CATTACATAGTAAAGTAATATGTTTTA
>CAC2235(cysK) Score=5.8 Pos=-49 [Clostridium acetobutylicum ATCC 824]
ATATTCCTAGTAAACAAATGTGTTTAA
>CAC0102(metY) Score=5.7 Pos=-277 [Clostridium acetobutylicum ATCC 824]
ATATTCATATTAATATAGTAGGAATTA
>CAC0878(CAC0878) Score=5.8 Pos=-70 [Clostridium acetobutylicum ATCC 824]
TTAAACATATTAGTTTAGTAGGTATTT
>CAC0929(ubiG) Score=5.4 Pos=-473 [Clostridium acetobutylicum ATCC 824]
AAAAACCTACTTATCAGATATGAAAAA
>CAC2236(cymR) Score=5.3 Pos=-86 [Clostridium acetobutylicum ATCC 824]
AAAATTCTACTTGACAAGTAAAATTTT
>CAC3325(CAC3325) Score=5.6 Pos=-354 [Clostridium acetobutylicum ATCC 824]
GTATACCTACTTGTATACTAGGAATAT
# RNA - THF
>CAC2418(folT) Score=75.1 Pos=-222 [Clostridium acetobutylicum ATCC 824]
GCAGAGTAGATATTGTGCGTCAAGTGTTAGAGGATGGGAAGTTGTCTCTAAACGAAAAGCTTAGTCTTGCGGTTCAATATCGCTTCCGCTGTTAC
# TF - ArgR: CAC2074
>CAC0376 Score=4.6 Pos=-65 [Clostridium acetobutylicum ATCC 824]
TCGTATAAATATTAAA
>CAC0376 Score=4.6 Pos=-44 [Clostridium acetobutylicum ATCC 824]
TTGTATACAAATACAA
>CAC0380 Score=4.5 Pos=-188 [Clostridium acetobutylicum ATCC 824]
ATTAATGAATATAAAT
>CAC0380 Score=4.6 Pos=-131 [Clostridium acetobutylicum ATCC 824]
TTGAATAAATATTCGT
>CAC0380 Score=4.9 Pos=-31 [Clostridium acetobutylicum ATCC 824]
ATGAATAAAAATTCAA
>CAC0973(argG) Score=5.3 Pos=-123 [Clostridium acetobutylicum ATCC 824]
ATGAATATTTATAAAA
>CAC0973(argG) Score=4.7 Pos=-103 [Clostridium acetobutylicum ATCC 824]
TTGCATAATTATAAGA
>CAC0973(argG) Score=4.6 Pos=-83 [Clostridium acetobutylicum ATCC 824]
ATTTATAATAATACCA
>CAC2390(argC) Score=5.2 Pos=-117 [Clostridium acetobutylicum ATCC 824]
ATGAATAATTATACAC
>CAC2390(argC) Score=5 Pos=-97 [Clostridium acetobutylicum ATCC 824]
CTTTATAAATATTCAA
>CAC2390(argC) Score=5 Pos=-63 [Clostridium acetobutylicum ATCC 824]
TTGAATAATTATACTT
>CAC3620 Score=5.2 Pos=-195 [Clostridium acetobutylicum ATCC 824]
ATGCATAAATATTAAT
>CAC3620 Score=4.9 Pos=-70 [Clostridium acetobutylicum ATCC 824]
GTTAATAATTATTCAT
>CAC3020(argJ) Score=5.3 Pos=-88 [Clostridium acetobutylicum ATCC 824]
ATGCATAAATATAAAT
>CAC3020(argJ) Score=5.4 Pos=-68 [Clostridium acetobutylicum ATCC 824]
TTGAATAATTATAAAA
>CAC2645(carA) Score=5.3 Pos=-182 [Clostridium acetobutylicum ATCC 824]
ATGCATAAATATAAAT
>CAC2645(carA) Score=5.4 Pos=-81 [Clostridium acetobutylicum ATCC 824]
ATGTATAAATATAAAA
>CAC2389(argB) Score=5 Pos=-98 [Clostridium acetobutylicum ATCC 824]
AAGTATAATTATTCAA
>CAC2389(argB) Score=5 Pos=-64 [Clostridium acetobutylicum ATCC 824]
TTGAATATTTATAAAG
>CAC2389(argB) Score=5.2 Pos=-44 [Clostridium acetobutylicum ATCC 824]
GTGTATAATTATTCAT
# TF - LexA: CAC1832
>CAC1815(recA) Score=5.2 Pos=-48 [Clostridium acetobutylicum ATCC 824]
TAGAACAAATGTTCGA
>CAC1832(lexA) Score=4.7 Pos=-84 [Clostridium acetobutylicum ATCC 824]
CAGAACATAAGTTTGC
>CAC0502(uvrB) Score=5.4 Pos=-29 [Clostridium acetobutylicum ATCC 824]
ACGAACAAATGTTTGA
# RNA - Cobalamin
>CAC2441(btuF1) Score=119.8 Pos=-338 [Clostridium acetobutylicum ATCC 824]
AATAATACCATATTTTAGGCACCTAATCTTAGGTTTAATAGGGAAATTGGTGAAAATCCAATGCAACCCCCGTTACTGTATACAGTTACAAAACCAATGTCCACTGGAGTTTTCTCTGGGAAGGATGGTTGAGGCTAAACTGTGAGCCAGGAGACCTACCTAAAATATTATGGAACTTCG
>CAC1365(cbiM) Score=105.4 Pos=-313 [Clostridium acetobutylicum ATCC 824]
TGCTACTAAAATTTGTAGGTTCAACTGAGGAGTCTTAGTTGATTAAAAAGGAATCAGGTGAAAAGCCTGAGCGGTCCCGCCACTGTAATAAAGGAGTTTAAGTACAATATGTCACTGGGAAACTGGGAAGGCGTACTTAAGCAATGATTTTTGAGCCAGGATACTTGCCATATTCTAGTATGTTTTTTC
# RNA - FMN
>CAC0590(ribD) Score=110.4 Pos=-170 [Clostridium acetobutylicum ATCC 824]
ATGTTCTTCAGGGATGGGTGAAATTCCCAATCGGCGGTAAAGCCCGCAAGCCATTTGGCAGATCCGGTTAAACTCCGGGGCCGACAGTTAAAGTCTGGATGAAAGAAGAAATAGCG
>CAC2841(ribU) Score=121.5 Pos=-198 [Clostridium acetobutylicum ATCC 824]
GAATGATCTTCAGGGCAGGGTGAAATTCCCTACCGGCGGTATAGCCCGCGAGCCTTTTTAGGTATGATCCGGTTTGATTCCGGAGCCGACAGTAAAGTCTGGATGAAAGAAGATATAT
# TF - NrtR: CAC1777
>CAC1777(nrtR) Score=6.3 Pos=-75 [Clostridium acetobutylicum ATCC 824]
TTTGTATCAAAATGATGCTAA
>CAC1777(nrtR) Score=5.6 Pos=-53 [Clostridium acetobutylicum ATCC 824]
ATAGTTTTAATATGATACAAA
>CAC1779 Score=4.9 Pos=-169 [Clostridium acetobutylicum ATCC 824]
TTAGCTTTATTTTTATACAAA
>CAC1779 Score=6.5 Pos=-102 [Clostridium acetobutylicum ATCC 824]
TTTGTATCATATTGGTACAAA
>CAC1779 Score=6.2 Pos=-39 [Clostridium acetobutylicum ATCC 824]
TTTGTATCAATATAGTACAAA
# TF - CzrA: CAC2242
>CAC2242(czrA) Score=7.4 Pos=-45 [Clostridium acetobutylicum ATCC 824]
CATATGAACATATATTCATATG
# RNA - Glycine
>CAC1472(aroP) Score=53.7 Pos=-222 [Clostridium acetobutylicum ATCC 824]
ACCCTTGGAGAGACTCTTAAAGAGCACCGAAGGAGAAAGCATAAAAAAAGCGAAACTCTCAGGTAAAAGGACAGGGG
>CAC1472(aroP) Score=40.7 Pos=-317 [Clostridium acetobutylicum ATCC 824]
GATGAAGTTAGCGGGAGAGCTTTGGCTTTTGCCATACACCGAAGAAGTAAATCTTTCAGGTATCTATTTAATTAGAGATGACCGCTATTGGATG
# RNA - L10_leader
>CAC3146(rplJ) Score=59.8 Pos=-168 [Clostridium acetobutylicum ATCC 824]
TATTAAATATGTAAATACTCCGTAGAAAGTAGGTGCGTGAGCGTAACGGATAACCAACCTACCGAGGATTCCAATATATATGAAAGTATATGGTCTCTTCGTACGTCTGCGGAGGGGCCTTTAGTTTATTATA
# RNA - L19_leader
>CAC1759(rplS) Score=23.4 Pos=-61 [Clostridium acetobutylicum ATCC 824]
AGGCGGTCCTCTGTCTTATATCTAGGCATGAACGTCAAAT
# RNA - L20_leader
>CAC2361(infC) Score=57.5 Pos=-149 [Clostridium acetobutylicum ATCC 824]
AGTATTGAAGAAGAAACTTGCCGTTTCTCACCTTACAGCAAAGCTAGTAAGGTTAAAGATATGCAGCTTATTTTGCTATGTATATTTGAGACGGTGAATAACCGTCTTTTTTTATTATA
# RNA - L21_leader
>CAC1257(rplU) Score=28.8 Pos=-90 [Clostridium acetobutylicum ATCC 824]
CACATGTAGACCGCACAAAACGGGTTTTTATTAAACACAATTTATTGTGTACCCCTATTGGCGAGGCCGTAAATGAGG
# RNA - Lysine
>CAC0608(lysA) Score=94.3 Pos=-279 [Clostridium acetobutylicum ATCC 824]
CCTTTTGTAGAGGTGCTTTAAGTCAAGAGTAACCGTTTGGAGTTGGCAAACTTAGATGAACGGTAAAAGGGGCTTTTAGCCGAAGCATTTAGATTGGCAGATTTATTTGCTGGCTTTTCATACAACATATGAATGGCTGTCACTTTATTAGTTAGTTATTAGGTAAGTGGAGCGCTACAAGGTACAC
# RNA - PreQ1
>CAC2413(queT) Score=24.5 Pos=-57 [Clostridium acetobutylicum ATCC 824]
ATTTAAGACAGTTCGAAACCATCCTGTCTATAAATAAAACTATGGAGGT
>CAC3622(COG1924) Score=18.4 Pos=-124 [Clostridium acetobutylicum ATCC 824]
TAAGACAGTTCGCAATCCATCCTGTCTATAAACAAAACCAGGGCAATAT
# RNA - Purine
>CAC2701(guaB) Score=61.7 Pos=-229 [Clostridium acetobutylicum ATCC 824]
TAATCGTTAATATAGTTTAACTCATATATTTCCTGAATATGGCAGGATGTTTCTACAAGGAACCTTAAATTTCTTACTATGAGTGATTTGTTTGTATGC
>CAC2772(pbuO) Score=83.7 Pos=-418 [Clostridium acetobutylicum ATCC 824]
TGAAAAGTAATAACATATTACCCGTATATGCTTAGAAATATGGTCTAAGCGTCTCTACCGGACTGCCGTAAATTGTCTGACTATGGGTGTTTATAAGTATTTT
>CAC0872(pbuX) Score=70.9 Pos=-473 [Clostridium acetobutylicum ATCC 824]
ATATAAAAAACTAAATTTCTCGTATACACCGGTAATATGGTCCGGAAGTTTCTACCTGCTGCCATAAATAGCAGACTACGGGGTGTTATTGATAATATAA
# RNA - PyrR
>CAC2112(pyrP) Score=35.9 Pos=-47 [Clostridium acetobutylicum ATCC 824]
GAGGTACTTTTAATATAGTCCAGAGAGGCTAAAAAGGAGGAATTATT
>CAC2645(carA) Score=46.9 Pos=-422 [Clostridium acetobutylicum ATCC 824]
ATATACCTTTAATGATTGGTCCAGAGAGGCTAAGAAGGATTAAAAGTTTTGTTTTATGGAGAGTATTATAGTCTTTTGCGTCTGGCAAAAGACTTTTTATTTT
>CAC2654(pyrB) Score=50.4 Pos=-150 [Clostridium acetobutylicum ATCC 824]
ATAAACCTTTAATTAAGGTCCTGTGAGGCCTGGAAGGTGCTGATAAGCTAGTAATAGGTGTATTATACCTTCCTTTAATTGAGGAAGGTTTTTATTTT
# RNA - SAM
>CAC0390(metI) Score=98.8 Pos=-177 [Clostridium acetobutylicum ATCC 824]
TCTTATCAAGAGTGACGGAGGGATAGGCCCTATGAAGTCCGGCAACATCCAATTATTTTGGAGATGTGCTAATTCCTACAGGTTTATCCTGAGAGATGAGAATG
>CAC0578(metH) Score=88.6 Pos=-181 [Clostridium acetobutylicum ATCC 824]
AATCTTATCAAGAGTGGTGGAGGGACTGGCCCTTTGAAACCCGGCAACCAGTATATTTTTTAATATATGTGGTGCTAAATCCTGCAGCAAACGCTGATAGATGAGAA
>CAC1825(metA) Score=83.8 Pos=-199 [Clostridium acetobutylicum ATCC 824]
TCTTATCAAGAAGGTGGAGGGACTGGCCCTATGAAGCCTGACAACCGGCAAATGTACGGTGTTAATTCCTGCAAAACTTATTTGTTTTGAAAGATAAGAAAA
>CAC0984(metN) Score=87.6 Pos=-182 [Clostridium acetobutylicum ATCC 824]
ACTTATCAAGAGAGGTGGAGGGACCGGCCCTGTGAAGCCCAGCAACCTGTATATGTTAATTATACAAGGTGCTAATTCCTGCAGCGCTAGCTGAGAGATGAGAATA
>CAC2856(metK) Score=94.9 Pos=-179 [Clostridium acetobutylicum ATCC 824]
ACTCTTATCAAGAGAGGTGGAGGGAAAGGGCCCGTTGAAACCCGGCAACCGATGTATTAATTTAAGTACATAATGGTGCCAATTCCTGCAGAATTATTCTGCAAGATAAGAG
>CAC2783(metY) Score=93.6 Pos=-224 [Clostridium acetobutylicum ATCC 824]
GGTCTTATCAAGAGAGGTGGAGGGACTGGCCCTATGAAACCCAACAACCAGCATTTTTTAATTAGATGTATGGTGTTAATTCCTGCAAAGTTAATTTTGAGAGATAAGAG
# RNA - T-box(Ala)
>CAC1678(alaS) Score=99.1 Pos=-223 [Clostridium acetobutylicum ATCC 824]
TTAGAGTGATGATGAGAATTAGTAAAATCAATTTGCATATAAAGAGAAGAAGTGGTTGGTGAAAACTTCCTATGTAATGATTTGAAGCTATCTCTGAACTTTTTTAAGAGAGACACTTTATTTTAGTGTAATTAGGGTGGTACCGCGGAATTATAGCTTTCGTCCCTTTGTT
# RNA - T-box(Arg)
>CAC1041(argS) Score=88.9 Pos=-242 [Clostridium acetobutylicum ATCC 824]
AAAAATCTATGAAGTGGAAAGTAGCATGTCGATTTTTTAAGCGAGCTGATATTTTGGTGAAAGTTCAGTATTAAGACATATGTGAAATAGAGCCATGGAGATGAATTATCCGCTTAACGCGTTAAAATTTTTAAGGTGGACTTTTATTAATAAGGTCAATCAGAGTGGTACCGCGAAATATAATCGTCTCTGCAGT
# RNA - T-box(Asn)
>CAC2979(aspS2) Score=121.1 Pos=-310 [Clostridium acetobutylicum ATCC 824]
TAAAATTGCAGTGAAGGAAAGAGTAAATTTAATTAAGTTTTCAGAGAGCCGGGCGTCAAGCTGTGAACCGGTAACGAGATTAAGTTGAAGAACATTCCGGAGTAGTTAACCAAAATCGTTTTGAAAGTAGGCTTAAACGGATGTCCACCGTTAAAGGGAATAGGTATCGATGTCTATAATATGGCATTCGTACTGATTAAGTTAGCAATTTTTTTGCTAAATAGGGTGGCACCGCGTTATATAATCGCCCCTATA
# RNA - T-box(Asp)
>CAC3564(aspS3) Score=107.1 Pos=-331 [Clostridium acetobutylicum ATCC 824]
TATAGATGCGAAGAAGAGAAAAGTAAATTTGATAAGTTTTATAAGCGAATTGGGAAATGGTGTGAGCCCAAGTAAAATATCAAGCTGAAAGACATCTCGGAGCATATTATCTGAAATTATTAGGATAATACGGTTTCTACCGTTAAAATGATAAAGAGAGTCAATTTATTTGATTTTAAATAAAGGATGGCACCGTGAAAAGCCTTCACTCCTTAC
# RNA - T-box(Cys)
>CAC3325(tcyA) Score=87.4 Pos=-327 [Clostridium acetobutylicum ATCC 824]
GATTTGCTAGGATAAGAACCAGTAACATAGCGGAAACTTACAGAGAAAAATCTCCAAGGCTGAAAGGGATTTTAAGTATGAACTATGTGAATGCATCTTTGAGCACTGCTCCGAACTTTGTAGGCAGCAGCGGATACGCACGTTAAAGCGTTATGGTATTTTTTATACCTTAAAACGAGATACCTTAACTTTACGTTTTGGTAATTAGAGTGGTACCGTGGAATTCAACTTCTGCCTCTAACTA
>CAC0687(cysE) Score=89 Pos=-269 [Clostridium acetobutylicum ATCC 824]
GAAATGCTTTGATAAAGTAAAGTAGTATAGTGAAAGTTTTAAGAGAGGGAATGTTAGCTGAAAAATTCCTAAATGGAAGCTGTATGAAGTGCGCTTTGGAGTACATCATTTGAAGTATGAGTAGGATGATGCGGTAATACCCGTTATAGTATGGAGCATTATATGTGCTTTTGTTTTAGAGTGGAATAGCGAGTAAGTATGACTTCGTCTCTAGTGA
>CAC0929(ubiG) Score=98.1 Pos=-377 [Clostridium acetobutylicum ATCC 824]
TAAATACTGTGATAAGAAATAGTAGCATAAATAAAACTTAACAGAGAGATCTCCCTGGCTGAAAGAGATTAAGATTAAGTTTATGCGAATGCATCTTGGAGTACTGCCTCGAAATGTGAAATTAATATATACTAAAATTTTTATAGTAGACGGCAGCGGGTACGCCCGATTAAAGCGTTATGGTATGTTAGTACCTAAGTTATGAGTTGTCATATTAGTTTTTATGTGATAATTAGAGTGGAACCGCGGAGTAAACTTCTGCCTCTATATT
# RNA - T-box(Gly)
>CAC3195(glyS) Score=73.2 Pos=-217 [Clostridium acetobutylicum ATCC 824]
TATCTATACAATGACAAAGATAGAAATTGTATTTTCTTCAAAGAGAGGCTGTGGAGGGTGTAAACGGTCAAGAAAATTCAGTAGTGGAGTCTTTCGAGTATTTTTAAAAGAAAAGCAGGGCTATTGCCAATAAGGGTGGAACCGCGGAAGTAATTTCGTCCCTTTG
# RNA - T-box(Ile)
>CAC1610(brnQ) Score=104.3 Pos=-340 [Clostridium acetobutylicum ATCC 824]
TATAAATTCTATGAAAGAAAAGAGTAAGCTATATATCTGTTCTAAATATTTACTCTAAAGTAAATACCATAAGAGAGCTAACGCTTGGTGAAAGTTAGTGTTCAGAATATATCCGAAAATCCTTCTTGAGAAGTGAAACTGAAACTTATAATTTAAGTAAGTTTTACCGGATTTCCACCGTTAAAAAGAAAGCGTATCAATAGCGTACGTGTTTTGAGCTGCCATAAATTAATTATTTATGGAATCAGGGTGGTAACGCGAGTATAACTCGTCCCTTTA
>CAC3038(ileS) Score=84.1 Pos=-346 [Clostridium acetobutylicum ATCC 824]
GAAAATAGTGTAGAAAGGGAAAAGTACTTTTAGGAAAGCTTATAGAGAGCAAGGAAATGGTGGAAACTTTGCAGCTTAAGTTTAAGGAAAATCACCCTGGAGCTGGAGACTGAAATTATAGTAAGTTTTTTCGTAATTCTGCGTTAAAGAATAGGGTATTAAAAAGTGCCTGAAGATTAAACCATAGGTGGTATATAAGCGAATGTAACTTCGTCCTATTT
# RNA - T-box(Leu)
>CAC0273(leuA) Score=123.4 Pos=-310 [Clostridium acetobutylicum ATCC 824]
ATATTGCTATGAACAGAAATATTAAGAATCAAATAAACTTCCAGAGAGTCGGGATTGCTGGGAACCGATAGTTTTTAGATTTTGAACTCATCTGTGAGCAGTCGCCTGAAGTTACTGTAGGGTAGAACGGAATTCCACCGTTATATGGATAGATAGTACGAACCATTTATAGTGGAGTGCTATTGAAAAAGTGAACTTTAAGTTAAGTTAAATAGAGTGGTACCGCGAGTAAACCTCGTCTCTTTCGT
>CAC0646(leuS) Score=129.1 Pos=-244 [Clostridium acetobutylicum ATCC 824]
TTTAAAAGCTTTGAACAAGAGTAGTAATATTTATTTATTTTAAGAGAGCTGTTGCTTGGTGAGAAACAGTATTAAAAAATATGAACTCGCTTGGGAGCTTATTTGCAGAAAAGCAAATACGGTAAATCCGTTAATTTTTTAAGTGAGGTATTTCCTAACTTGAGTGGTACCGCGGAAGTAATGCTTTCGTCTCAATC
# RNA - T-box(Met)
>CAC2991(metS) Score=92.4 Pos=-308 [Clostridium acetobutylicum ATCC 824]
TTCAAAAGCATTGATGGGAAGAGTAGTAAGTTAAGGTTTTTAAAGAGAGCTGATGTTTGGTGAGATTCAGCATTGCCAAGATTTATGAATATGGCCCCTGAGCTTAATATTTGAAGAATAGTAGGATATTACGTAAGCAGGCGTTACACTGCAGGGTGATAAATAACTGTAAGTTAGAGTCACTTGTTGAGATTTTCATTGTGAGATGAAAGTGAATTAGAGTGGTAAAGCGAAATCACGCCTCTAAA
# RNA - T-box(Phe)
>CAC2357(pheS) Score=116.2 Pos=-270 [Clostridium acetobutylicum ATCC 824]
AATAAAAACATTGAAAGAGAGAGTAAATATAATGAGACTTTAAGAGAGAAAAGGTTAATGGCTGGAAGCCTTTTTAAGTTTGAGTTATATTGAAGTTCACTCTGGAGTTCCATTTGCGAAATGTGAGTCTTACAAATTAGTAAATGGCGGTTACATATCGTTAAAATTTTGAGTGGGTTATCCAATTTGGGTGGTACCGCGGAAATTCTCCGTCCCTTTT
# RNA - T-box(Pro)
>CAC3178(proS) Score=71.1 Pos=-206 [Clostridium acetobutylicum ATCC 824]
TAGTAAAACTGTGATAAAGAATAGTAGAAGCTTCATAAATTCAGAGAGAAAATCCATGGCTGAAAGATTTTCAACCTAGCTTTGAACCTGCTTTTGAGTTTTAATTAATGAGTACAAATTTAGGTGGTACCGCGATCATACTCGCCCTAATA
# RNA - T-box(Ser)
>CAC0014(yurG) Score=108.2 Pos=-376 [Clostridium acetobutylicum ATCC 824]
ATAAACCGTTGAAGAGAATAGTAACTGTTTAACAATTTTAGAGAGTCAGTGGTTGGTGAAAACTGATATTTGTTATTTAGTGAATCCGCCTCGGAGGGATTGCGATGAGCAATACGGCGATTGTGTCGTTAAATTTCAATTAAGATAATCATTTTAAATGATTAATTAGGGTGGTAACGCGGTCTTTCGTCCCTTACGT
# RNA - T-box(Thr)
>CAC2362(thrZ) Score=122.1 Pos=-270 [Clostridium acetobutylicum ATCC 824]
AATAAAGGCTTTGAAAAGGAAGAGTAAGCAAATTACTGTTTTAAAGAGAGGGAATTATTAGCTGAAATTTTCCCAAACGTGTATTGTTGAAAACCACCTTTGAGCTGAGTGTTGAATTATAGTAGGCATTTCCGCATATCTGCGTTATTGATTTGAGTGAAAGGAAGGAAAGATTTCTTCTTTTAATTTGGGTGGAAACACGGTAACTCGTCCCTTGT
# RNA - T-box(Trp)
>CAC0626(trpS) Score=95.3 Pos=-279 [Clostridium acetobutylicum ATCC 824]
TAAAATCGATGAGAAGAAGAGTAAATTTAAAAACAAAATTAAAGAGAACTGTGAATTGGTGAAAGTGCAGTATTTATGATTAAATTGAATGGGTCTTTGAGATTTGAAGTGAAAGTATATAATTTATATTATTAATTTCAAACGTAAACCGCGTTAAGGAAGAAAAGATTACATTATTTTGAGGGGAGTTATGCTCCTGAAAATAGGTGGTACCGCGTGAAATATACACGCCCTATAGAA
>CAC3617(trpP) Score=109.4 Pos=-382 [Clostridium acetobutylicum ATCC 824]
TAAATCCTTTGATAAGGAAGAGTAGCCATAGAATTTAGTTAAAGAGAGCTGAGGGTGGTGTGATCTCAGTACAATAATTGTTGGTGAATGGACCTTTTAGGAGTAAATCGAAATCCAAACGGAGAGTAGTGGTTAACGTTTGCCGTACGTTATAACGGATAGAGTATGTTAGTACTTGAAATAAGCGATGCTTTTTTAAGCATAATTTAGGTGGTACCGCGGAAGTATCTCCGTCCTAATTAA
>CAC3163(trpE) Score=100.4 Pos=-395 [Clostridium acetobutylicum ATCC 824]
ATACAAGTCTGTGAATAGAAGTAGTAGCTATTAAGAAATTGGTTAAAGCGAGTCGGGTTAGTGTGAGCCGGTACCGTAGCTTGTAGTGAATGGATCTATGAGACGATGCTGTGAAAGAGGTATTCAGTAGTAGCATTCGGAAAGTCTACCGTTAAAAGGACAGGATATCGAAATTGTAATTTCCGTATCTGTAAAAGATGATCTATTTATTTACTTAGATTAAAATGGGTGGCACCACGGACCACTTCGTCCCATAC
# RNA - T-box(Tyr)
>CAC0780(tyrZ) Score=105.9 Pos=-324 [Clostridium acetobutylicum ATCC 824]
TAAATGCATTGAAGAGAAAGAGTAGGATTACCTAGAGCTTTTACAGAGAGCTTCCGTTAGCTGAGAGGAAGCAAGAATAAGTATTCTGAATACATCTCTGAGCACCTCACCAAAGCTTTCAAACTAGAAGGTGGTAGGCTGAAGGCGTATTCCTTTCCAACGTTAAAAGGATAGAGTATCATGTATGAATTCTATACATCGTACTTGAAAAGGTTAGTATTGTGAGATGCTAATAAATTAAGGTGGTACCGCGAATGTAACTCTCGTCCTTATTAA
# RNA - T-box(Val)
>CAC0091(ilvC) Score=107.8 Pos=-393 [Clostridium acetobutylicum ATCC 824]
CAAAGACAATGATGAGGAAGAGTAAATAGTGATTATTTTTTAGAGAGTGAGATACTGGTGGGAACTCATAAATATAGCTATTGAAGGTAGCCTTTGAGTCGAAAGTTGAATTTCAGTAGGCTTTTTCCGGTTTGAACCGTTATTATTTAAGTAAAAAATTTGGGTGGTACCGCGCGACCAAAAATTCTCGCCCCAAGCAG
>CAC2399(valS) Score=120.3 Pos=-268 [Clostridium acetobutylicum ATCC 824]
AATATAAACGCTGAAGAAGAGGAGTAAAAGTAAGGCTGGCATTAAGAGAGGGAAATTTTTAGCTGAAATATTTCCTATGCAAAGCACTTTGAAGGTAGCTTCTGAGTTCTTCTATTGAAAATTTGAGTAGATAGAAGCGGTTTTCTTACCGTTATTTATAGAGAGTCTGCTTTTTTAGCAGGAATAAAGGTGGTATCGCGCACAGTCGTCCTTTGA
# RNA - glmS
>CAC0158(glmS) Score=123.8 Pos=-249 [Clostridium acetobutylicum ATCC 824]
TTATAGTTAAAGCGCCCGAACTTGAGTGATATAGTTCATTTAAGTTGACGAGGATGGGGAGAATCGAATCTTCGGCGGATGCCCCACGGTACCGCACTACCGTTAGCGGTTGGTAAAAGCAGAAAGTGATTTCTGTCACAAAGCCAATCTGGTGTTAAAACC
# RNA - TPP
>CAC1397(COG0084) Score=72.3 Pos=-156 [Clostridium acetobutylicum ATCC 824]
TTTAGTGCTAGGGGTGCCTTTTGGCTGAGAGAAGTTAAAAAACTTTAACCCTTTGAACCTGATTCGGTTAATTCTGACGAAGGAAAGCTTTTTAAATGATTACT
>CAC2928(thiT) Score=72.8 Pos=-201 [Clostridium acetobutylicum ATCC 824]
ATATGTGCTAGGGGTGCCTTTAGGCTGAGAAACAGTTTGTCACGTTAACCCTTAACCTGATCTGGATAATACCAGCGTAGGGAAGCAGTTTGAATTTTGAAT
>CAC3096(thiM) Score=53.4 Pos=-196 [Clostridium acetobutylicum ATCC 824]
TAATATTTTTCAGGGGAGCTTGTTTTCAGGCTGAGAGGAAGTAATTGAACTTCGATCCATATACCTGATTTGGATAATGCCAACGTAGGAAATAGGTTACTTGATTTA
>CAC3014(thiC) Score=55.9 Pos=-242 [Clostridium acetobutylicum ATCC 824]
ATATTTTAGCTAGGGGTGCCTTTTAAGGCTTTTATAGTTGATATCATTAAAAATATTTAACTAATAAAAGACTTTAGGCTGAGAGGAGAAATCCAACCCTTTGAACTTGATGTAGTTAATACTACCGTAGGGAAGCAGTGCATTGTATAT
>CAC2924(thiS) Score=73.8 Pos=-212 [Clostridium acetobutylicum ATCC 824]
AATATAGTTAACGGGGAGCCTGTAGACAGGCTGAGAGTGGAATGTGATTCCAGACCCTCATAACCTGATTTGGATAATGCCAACGTAGGGAGTTAATGCATCATGTTTG
# TF - HrcA: CAC1280
>CAC1280(hrcA) Score=7.6 Pos=-42 [Clostridium acetobutylicum ATCC 824]
TTAGCACTCAAAGAGAGTGAGTGCTAA
>CAC2704(groES) Score=7.7 Pos=-106 [Clostridium acetobutylicum ATCC 824]
TTAGCACTCAAGATTAACGAGTGCTAA
>CAC3315(htpG) Score=7.7 Pos=-116 [Clostridium acetobutylicum ATCC 824]
TTAGCACTCGTTGATATAGAGTGCTAA
# TF - Zur: CAC2634
>CAC1478(rpsD2) Score=5.4 Pos=-111 [Clostridium acetobutylicum ATCC 824]
CAAATGAAAAATATTCTCATTTA
>CAC1478(rpsD2) Score=5.4 Pos=-193 [Clostridium acetobutylicum ATCC 824]
TAATTGATAATTATTATCATATG
>CAC2877(znuC) Score=6.3 Pos=-81 [Clostridium acetobutylicum ATCC 824]
TACTTGCAAATGATTTGCATTAT
>CAC2634(zur) Score=4.8 Pos=-108 [Clostridium acetobutylicum ATCC 824]
TTTATTAAAACCATTTTCTTTTA
>CAC1593(znuA) Score=6.4 Pos=-45 [Clostridium acetobutylicum ATCC 824]
TTAATGCAAATTATTTGCAAGTA
>CAC0587(fld) Score=5.1 Pos=-51 [Clostridium acetobutylicum ATCC 824]
ATAATGAAAATCAATATCAACAA
# TF - NiaR: CAC0009
>CAC1025(nadA) Score=6.1 Pos=-79 [Clostridium acetobutylicum ATCC 824]
ATTTAATGTATATACACCTGTA
# RNA - ydaO-yuaA
>CAC3081(COG3773) Score=76.9 Pos=-124 [Clostridium acetobutylicum ATCC 824]
ATCATTAGCCTAAATTTTAAAAACGGGGAAACCAATTTTTGGGGTGAATCGCATAATATATGCGTAGGTTTGTGCCTTTACCGAATCCGTCAGCTAACCTCGTAGAATAAAAGGAGGAAGATT
>CAC1232(lysM/COG3773) Score=83.6 Pos=-172 [Clostridium acetobutylicum ATCC 824]
CCTTAAGAGTGCCGAATCTTAATAATATTTAAGTACGGGGGAACACATTGTGGGTGAATCTTACGACTATTCGTAAGTAGGGTGCCTTCAACCCGAATCCGTAAGCTAACCTCGGAGGCAAAATTGATAAAGGAAAT
# RNA - ykoK
>CAC0683(rimM) Score=137.4 Pos=-450 [Clostridium acetobutylicum ATCC 824]
AAAGTTTTAGTTAGGTGAGGCTCCTATATAGATATACGCTACTGCCCAGAAACATCGAGAGATGCCAAATTGGGTCAGCAGATATTACCGAATCAAGGTTCTATCTAATGTAGCTGGATTTATAGTTTTAATCTAAGCTATATAGTGCTAAAGCTCTACTGTCTAATTTCGTATT
>CAC3329(mntH) Score=156.3 Pos=-356 [Clostridium acetobutylicum ATCC 824]
AATAATGTATTGTTAGGTGAGGCTCCTATATAGATATATGCTACTGCCCAAAAATATCGAAAGATGCCAATGGGTTAACAGGTACTACCGAATTAAGGTTTTACTTAATGTAGCTGGGATTACCCAAAGCTATATAGTGCTAAAGCTCAACGAAAGATAGTGTAT
# TF - CcpA: CAC3037
>CAC3275 Score=4.1 Pos=-107 [Clostridium acetobutylicum ATCC 824]
ATTTAAACTATTTTAA
>CAC3273 Score=4.1 Pos=-114 [Clostridium acetobutylicum ATCC 824]
ATGTAAATCTTTAAAA
>CAC3274 Score=3.9 Pos=-104 [Clostridium acetobutylicum ATCC 824]
ATTTAAATTTTAATAT
>CAC3275 Score=4 Pos=-87 [Clostridium acetobutylicum ATCC 824]
ATTAAATCTTTTTCTT
>CAC3272 Score=4.3 Pos=-75 [Clostridium acetobutylicum ATCC 824]
ATAAAAATATTTTAAA
>CAC3279 Score=4 Pos=-131 [Clostridium acetobutylicum ATCC 824]
AAGTAATCTTTTAAAT
>CAP0003 Score=4.6 Pos=-48 [Clostridium acetobutylicum ATCC 824]
AAGAAAACGATATAAT
>CAP0002 Score=4.4 Pos=-167 [Clostridium acetobutylicum ATCC 824]
ATGAATACGTTTTATT
>CAC2229(nifJ2) Score=4.5 Pos=-117 [Clostridium acetobutylicum ATCC 824]
TTGAAAAAAATTTTAT
>CAC2851 Score=4.4 Pos=-61 [Clostridium acetobutylicum ATCC 824]
ATGAAATCGATTATAA
>CAC2689(CAC2689) Score=4.4 Pos=-148 [Clostridium acetobutylicum ATCC 824]
ATGAAAACGTATATAA
>CAC0612(lrgA) Score=4.2 Pos=-119 [Clostridium acetobutylicum ATCC 824]
ATGTAATCGTTATTAT
>CAC0612(lrgA) Score=3.9 Pos=-150 [Clostridium acetobutylicum ATCC 824]
AATTAAAATTTTATAA
>CAC2372(sspA) Score=4.2 Pos=-72 [Clostridium acetobutylicum ATCC 824]
TAAAAAACGTTATTAT
>CAC1075(gluA) Score=4.7 Pos=-50 [Clostridium acetobutylicum ATCC 824]
TTGTAAATGTTTTCAT
>CAC2570(ganA) Score=4.6 Pos=-56 [Clostridium acetobutylicum ATCC 824]
TAGAAAACGATTTCTT
>CAC1345(xylT) Score=4.6 Pos=-61 [Clostridium acetobutylicum ATCC 824]
ATGAAATCGTTTAAAA
>CAC1345(xylT) Score=4 Pos=-79 [Clostridium acetobutylicum ATCC 824]
TATAAAAATTTATCAT
>CAC2658(glnN) Score=4.5 Pos=-157 [Clostridium acetobutylicum ATCC 824]
TAGTAAACGTTTTCTT
>CAC2658(glnN) Score=4.6 Pos=-202 [Clostridium acetobutylicum ATCC 824]
ATGAAAAAATTTACAA
>CAC0164 Score=4.4 Pos=-38 [Clostridium acetobutylicum ATCC 824]
TTGAAAACGCTATCAT
>CAC1462(fruA) Score=4.9 Pos=-51 [Clostridium acetobutylicum ATCC 824]
TTGAAAACGTTTTTAT
>CAC0332(manB) Score=4.8 Pos=-158 [Clostridium acetobutylicum ATCC 824]
TTGTAAACGTTTTTAT
>CAP0160(CAP0160) Score=4.7 Pos=-170 [Clostridium acetobutylicum ATCC 824]
AAGAAAATGTTTTCAA
>CAC0532 Score=4.4 Pos=-202 [Clostridium acetobutylicum ATCC 824]
TTGAAAAGGTTTTCTT
>CAC1339(araE) Score=4.7 Pos=-91 [Clostridium acetobutylicum ATCC 824]
ATGAAAACGTTATATA
>CAC2612(xylB) Score=4.9 Pos=-104 [Clostridium acetobutylicum ATCC 824]
ATGAAAAAGTTTACAA
>CAC2612(xylB) Score=4.2 Pos=-35 [Clostridium acetobutylicum ATCC 824]
TTTAAAAAGTTATTTA
>CAC1341(araD) Score=3.9 Pos=-157 [Clostridium acetobutylicum ATCC 824]
TAGAAAAAGAAAACTT
>CAC1341(araD) Score=4 Pos=-105 [Clostridium acetobutylicum ATCC 824]
TGGTAAACGTTTTACT
>CAC3673(xylR) Score=4.1 Pos=-122 [Clostridium acetobutylicum ATCC 824]
AAGAAAAAATATACAT
>CAC0358 Score=4.2 Pos=3 [Clostridium acetobutylicum ATCC 824]
AATAAAATTTTTAAAT
>CAC2828(mutT1) Score=3.9 Pos=-94 [Clostridium acetobutylicum ATCC 824]
ATATTAAAATTTTCAA
>CAC2828(mutT1) Score=4.6 Pos=-70 [Clostridium acetobutylicum ATCC 824]
AAGAAAACGATTATAT
>CAP0056(pelL2) Score=4 Pos=-129 [Clostridium acetobutylicum ATCC 824]
AATAAAAAGTTTTACA
>CAP0056(pelL2) Score=4.4 Pos=-44 [Clostridium acetobutylicum ATCC 824]
ATGTTAACGTTAACAT
>CAC1968(pelL2) Score=4.3 Pos=-47 [Clostridium acetobutylicum ATCC 824]
TAGTAAAAGATTTTTT
>CAC2514(lacB) Score=4.3 Pos=-63 [Clostridium acetobutylicum ATCC 824]
TATAAAAAGTTTTATA
>CAP0161(solR) Score=4.6 Pos=-170 [Clostridium acetobutylicum ATCC 824]
TTGAAAACATTTTCTT
>CAP0097(lipG) Score=4.4 Pos=-189 [Clostridium acetobutylicum ATCC 824]
ATTAAAAAAATTTAAA
>CAC2981(mpg) Score=4.6 Pos=-124 [Clostridium acetobutylicum ATCC 824]
ATGTAAACGTTAATAT
>CAC0421 Score=4.5 Pos=-137 [Clostridium acetobutylicum ATCC 824]
ATGATAACATTTTCAT
>CAC3037(ccpA) Score=4.2 Pos=-78 [Clostridium acetobutylicum ATCC 824]
TATAAAAAGATTATAA
>CAC2955(lacR) Score=4.1 Pos=-86 [Clostridium acetobutylicum ATCC 824]
TTGAAAATGATACTAT
>CAC2954(lacA) Score=4.4 Pos=-38 [Clostridium acetobutylicum ATCC 824]
AAGTAAAAAATTTAAT
>CAC2966(lacR) Score=4.1 Pos=-134 [Clostridium acetobutylicum ATCC 824]
ATGTAAACGAAAACAA
>CAC2966(lacR) Score=4.3 Pos=-77 [Clostridium acetobutylicum ATCC 824]
TAGAAAACGATAACTA
>CAC2965(lacF) Score=4.2 Pos=-32 [Clostridium acetobutylicum ATCC 824]
ATAAAAATTATTTAAA
>CAC3672(msmE) Score=4.9 Pos=-45 [Clostridium acetobutylicum ATCC 824]
ATGTAAACGATTTAAT
>CAC0987 Score=4.6 Pos=-155 [Clostridium acetobutylicum ATCC 824]
ATGAAAAAAATTACAT
>CAC2547 Score=4.3 Pos=-193 [Clostridium acetobutylicum ATCC 824]
TTAAAAAAGATTAATA
>CAC2547 Score=4.3 Pos=-124 [Clostridium acetobutylicum ATCC 824]
AAGTAAACGATAATAT
>CAC0263(serB) Score=3.9 Pos=-66 [Clostridium acetobutylicum ATCC 824]
ATAATAAAATTATAAT
>CAC0767 Score=4.6 Pos=-37 [Clostridium acetobutylicum ATCC 824]
ATAAAAAAGTTTAAAA
>CAP0098(amyA) Score=4.2 Pos=20 [Clostridium acetobutylicum ATCC 824]
AAGAAAAAGCTTACTT
>CAP0098(amyA) Score=4.2 Pos=86 [Clostridium acetobutylicum ATCC 824]
AAGTAATCGTTTTCAA
>CAC2252(xylS2) Score=4.6 Pos=120 [Clostridium acetobutylicum ATCC 824]
ATGAAAACGATATCTA
>CAC2959(galK) Score=4.8 Pos=55 [Clostridium acetobutylicum ATCC 824]
ATGAAAATGTTTTCTT
>CAC0176(oppA) Score=4.5 Pos=112 [Clostridium acetobutylicum ATCC 824]
TAGAAAACGTTATAAA
>CAC1556(yvbX) Score=4.2 Pos=43 [Clostridium acetobutylicum ATCC 824]
TTGTAATCATTTTCAA
>CAC0086(YkgB) Score=4.5 Pos=10 [Clostridium acetobutylicum ATCC 824]
ATGAAAAGGTTTATAT
>CAC3682(kdpA/atkA) Score=4.6 Pos=-332 [Clostridium acetobutylicum ATCC 824]
TTGAAAACATTATCAT
>CAP0066(ptnA) Score=4.6 Pos=-321 [Clostridium acetobutylicum ATCC 824]
ATGAAAACGTATTAAT
>CAC3648(CAC3648) Score=4.4 Pos=-341 [Clostridium acetobutylicum ATCC 824]
TGGAAAACATTTTCAT
>CAC3683(pbp) Score=4.6 Pos=-308 [Clostridium acetobutylicum ATCC 824]
ATGATAATGTTTTCAA
>CAC3683(pbp) Score=4.3 Pos=-33 [Clostridium acetobutylicum ATCC 824]
ATAAAAAATATTTAAT
>CAC1084(bglC) Score=4.2 Pos=-102 [Clostridium acetobutylicum ATCC 824]
ATGTATACGATTTCTT
>CAC1084(bglC) Score=4 Pos=-38 [Clostridium acetobutylicum ATCC 824]
AAGAAAAAATATTATA
>CAC0812(pelL) Score=4.2 Pos=-165 [Clostridium acetobutylicum ATCC 824]
TTGTTAACGATAACAA
>CAC3500 Score=4.3 Pos=-261 [Clostridium acetobutylicum ATCC 824]
TTGAAAACGATTGTAT
>CAC1044(CAC1044) Score=4.4 Pos=-261 [Clostridium acetobutylicum ATCC 824]
TTGATAACGTTATCTT
>CAC3500 Score=3.9 Pos=-203 [Clostridium acetobutylicum ATCC 824]
AAATAAACATTAAAAT
>CAC0436(yxkH) Score=4.1 Pos=-259 [Clostridium acetobutylicum ATCC 824]
AAGATATCGTTTTCAA
>CAC0436(yxkH) Score=3.9 Pos=-124 [Clostridium acetobutylicum ATCC 824]
AAAATAATGTTATAAT
>CAC0635(CAC0635) Score=4.1 Pos=-197 [Clostridium acetobutylicum ATCC 824]
TTTAATACGATTACAT
>CAC0270(CAC0270) Score=4 Pos=27 [Clostridium acetobutylicum ATCC 824]
ATAAAAAAAATAAATT
>CAC1407(bglP) Score=4.1 Pos=49 [Clostridium acetobutylicum ATCC 824]
AAGAAAACGTTAACAG
>CAC0154(mtlA) Score=3.9 Pos=-112 [Clostridium acetobutylicum ATCC 824]
TTGAAAACGTATACCA
>CAC0019 Score=4 Pos=-88 [Clostridium acetobutylicum ATCC 824]
ATGAAATCACTTTCAT
>CAC0423 Score=4.2 Pos=-249 [Clostridium acetobutylicum ATCC 824]
AATTAAAAGTTTTATA
>CAC0692(uxaC) Score=3.9 Pos=-335 [Clostridium acetobutylicum ATCC 824]
AAATAAAAATTTATAA
>CAC0706(eglA) Score=3.9 Pos=-76 [Clostridium acetobutylicum ATCC 824]
CAGATAACGTTTACAA
>CAC0743(bglH) Score=3.9 Pos=-151 [Clostridium acetobutylicum ATCC 824]
ATGATAACCTTATCAT
>CAC1457 Score=4.1 Pos=-118 [Clostridium acetobutylicum ATCC 824]
ATTAAAATATTATTAA
>CAC1529(arb43) Score=4 Pos=-94 [Clostridium acetobutylicum ATCC 824]
TTGAGAAAGATAAAAT
>CAC1529(arb43) Score=4.3 Pos=7 [Clostridium acetobutylicum ATCC 824]
ATGAAAAAATATTAAA
>CAC2613(glcK) Score=4 Pos=-349 [Clostridium acetobutylicum ATCC 824]
AAGAAAATTATAAATT
>CAC2810(CAC2810) Score=4.2 Pos=-32 [Clostridium acetobutylicum ATCC 824]
TTGTTAAAAATTAAAT
>CAC3422(xynT) Score=3.9 Pos=-41 [Clostridium acetobutylicum ATCC 824]
TTGAAAACGTTTAGTG
>CAC3427(ptgA) Score=4.1 Pos=3 [Clostridium acetobutylicum ATCC 824]
TTTAAAAAATTATTTT
>CAC3451(xynT) Score=4.4 Pos=-69 [Clostridium acetobutylicum ATCC 824]
TTGAAAAAGTTTGTAT
>CAC3451(xynT) Score=4.4 Pos=-35 [Clostridium acetobutylicum ATCC 824]
ATGTAAATAATTACAA
>CAC0538(manB) Score=4.3 Pos=-147 [Clostridium acetobutylicum ATCC 824]
TTGTAAATTATTAAAA
>CAC0539(manB) Score=4.2 Pos=-58 [Clostridium acetobutylicum ATCC 824]
ATAAAAACTTTATAAA
>CAC0570(gamP) Score=4 Pos=-31 [Clostridium acetobutylicum ATCC 824]
ATTTTAAAGATAAAAT
>CAC1353(nagE) Score=4.1 Pos=-219 [Clostridium acetobutylicum ATCC 824]
TTGTAAACGATGTAAA
>CAC1354 Score=4.5 Pos=-197 [Clostridium acetobutylicum ATCC 824]
ATGAAAAAAATTTTAA
>CAC0383 Score=4 Pos=-153 [Clostridium acetobutylicum ATCC 824]
ACTAAAATGTTTACAT
>CAC1320(glpP) Score=4.1 Pos=-26 [Clostridium acetobutylicum ATCC 824]
AGGATAATGTTTACTT
>CAC3669 Score=4.3 Pos=-69 [Clostridium acetobutylicum ATCC 824]
ATGTATATGTTTTCAT
>CAC0422(licT) Score=4.7 Pos=-154 [Clostridium acetobutylicum ATCC 824]
ATGAAAATGTTATCAT
>CAC2833(sdaR) Score=4.6 Pos=-126 [Clostridium acetobutylicum ATCC 824]
ATTAAAATGATTAAAA
>CAC3295(mepA) Score=4.6 Pos=-154 [Clostridium acetobutylicum ATCC 824]
ATGAAAACATTAAAAT
>CAC3647(abrB) Score=4.7 Pos=-108 [Clostridium acetobutylicum ATCC 824]
ATGAAAAAAATTAAAT
>CAC1816(rny) Score=4.1 Pos=-183 [Clostridium acetobutylicum ATCC 824]
TTGTAAACTCTTTAAT
>CAC2534 Score=4.1 Pos=-190 [Clostridium acetobutylicum ATCC 824]
AAGAAAACGTTGTCTT
>CAC2534 Score=4.6 Pos=-82 [Clostridium acetobutylicum ATCC 824]
TTGAAAAAAATTTAAT
>CAC0434(ispF) Score=4.3 Pos=-77 [Clostridium acetobutylicum ATCC 824]
TTTAAAACTATTTCTT
>CAC2660(pykA) Score=4.2 Pos=-168 [Clostridium acetobutylicum ATCC 824]
ATTAAAAATTTTATAA
>CAC0708(cggR) Score=4.5 Pos=-117 [Clostridium acetobutylicum ATCC 824]
ATGAAAAAATTATATT
>CAC0535 Score=4.4 Pos=-156 [Clostridium acetobutylicum ATCC 824]
ATAAAAAAATTTTAAA
>CAC0695(uxaB) Score=3.9 Pos=-101 [Clostridium acetobutylicum ATCC 824]
ATATAAAAGAATACAA
# TF - Rex: CAC2713
>CAC2712(crt) Score=5.6 Pos=-45 [Clostridium acetobutylicum ATCC 824]
TTGTTATAATATTAACAA
>CAC3076(ptb) Score=4.8 Pos=-52 [Clostridium acetobutylicum ATCC 824]
ACGTTAATCATTTAACAT
>CAC0267(ldh) Score=5.6 Pos=-98 [Clostridium acetobutylicum ATCC 824]
TAGTTAATAAATTAACAA
>CAP0035(adhE2) Score=4.9 Pos=-262 [Clostridium acetobutylicum ATCC 824]
TTGTTAAATGTTTGACAA
>CAC2873(thl) Score=4.6 Pos=-161 [Clostridium acetobutylicum ATCC 824]
TTGTGTTTTTTTTAACAA
>CAC1025(nadA) Score=5.3 Pos=-110 [Clostridium acetobutylicum ATCC 824]
TTGATAAATATCTAACAA
>CAC1512(asrT) Score=5.5 Pos=-42 [Clostridium acetobutylicum ATCC 824]
TTGTTATATTTTTAACAA
# TF - AraR: CAC1340
>CAC1341(araD) Score=5.3 Pos=-430 [Clostridium acetobutylicum ATCC 824]
ATATTGATACGTATAAATTT
>CAC1343(ptk) Score=4.6 Pos=-154 [Clostridium acetobutylicum ATCC 824]
TGACATATGCGTACAAATAT
>CAC1529(arb43) Score=5.7 Pos=-201 [Clostridium acetobutylicum ATCC 824]
AAATTTATACGTATAAATTA
>CAC1529(arb43) Score=5.3 Pos=-60 [Clostridium acetobutylicum ATCC 824]
TAATATGTACGTATATATTA
>CAC3436(abf3) Score=4.5 Pos=-300 [Clostridium acetobutylicum ATCC 824]
ATATTTATACGTGTTAATTT
>CAC1344(araK) Score=4.9 Pos=-103 [Clostridium acetobutylicum ATCC 824]
AAATAGGTACGTACCATTTT
>CAC1344(araK) Score=4.5 Pos=-72 [Clostridium acetobutylicum ATCC 824]
TGACATGTACGTACAAAAGT
>CAC3436(abf3) Score=3.9 Pos=-228 [Clostridium acetobutylicum ATCC 824]
CATTTTATGGGTATATAATA
>CAC1340(araR) Score=4.6 Pos=-246 [Clostridium acetobutylicum ATCC 824]
TAATTTGTACTTATAAATGT
>CAC1339(araE) Score=4.6 Pos=-215 [Clostridium acetobutylicum ATCC 824]
CAATTCATACGTATAAAATC
>CAC1339(araE) Score=4.4 Pos=-182 [Clostridium acetobutylicum ATCC 824]
ACATTTATACACATAAATAT
>CAC1340(araR) Score=5.3 Pos=-88 [Clostridium acetobutylicum ATCC 824]
AAATTTATACGTATCAATAT
>CAC1340(araR) Score=4.7 Pos=-215 [Clostridium acetobutylicum ATCC 824]
ATTTTCATACGTATAAATTC
>CAC1341(araD) Score=4.6 Pos=-272 [Clostridium acetobutylicum ATCC 824]
ACATTTATAAGTACAAATTA
>CAC1341(araD) Score=4.7 Pos=-303 [Clostridium acetobutylicum ATCC 824]
GAATTTATACGTATGAAAAT
>CAC1343(ptk) Score=5.8 Pos=-186 [Clostridium acetobutylicum ATCC 824]
AAATTTATACGTACAAATTA
# TF - YhcF: CAC0265
>CAC0264(yhcI) Score=5.7 Pos=-65 [Clostridium acetobutylicum ATCC 824]
GTGTATTATATACATAGTACAG
>CAC3561 Score=6.2 Pos=-174 [Clostridium acetobutylicum ATCC 824]
GTGTACTATTTATGTAATACAC
# TF - ExuR: CAC0693
>CAC0695(uxaB) Score=5.2 Pos=-42 [Clostridium acetobutylicum ATCC 824]
TTTTGAACACGTGAACGTAA
>CAP0056(pell) Score=6.1 Pos=-46 [Clostridium acetobutylicum ATCC 824]
AAATGTTAACGTTAACATAA
>CAC0695(uxaB) Score=5.4 Pos=-130 [Clostridium acetobutylicum ATCC 824]
AAATGTTCACGTGTTCAAAA
>CAC0692(uxaC) Score=5.7 Pos=-121 [Clostridium acetobutylicum ATCC 824]
AGTTGTTCACGTTCACAAAA
>CAC0804(pelA) Score=5.4 Pos=-100 [Clostridium acetobutylicum ATCC 824]
AATTGTTAACGTTAAACAAA
>CAC0804(pelA) Score=4.6 Pos=-42 [Clostridium acetobutylicum ATCC 824]
TATGTTTATCGTAAACAAAA
>CAC2774(mcp) Score=5.3 Pos=-51 [Clostridium acetobutylicum ATCC 824]
TTTTGTTAACGTTATCTGTA
>CAC2774(mcp) Score=4.5 Pos=-38 [Clostridium acetobutylicum ATCC 824]
ATCTGTATACGATAACAATT
>CAC0812(pelL) Score=5.7 Pos=-167 [Clostridium acetobutylicum ATCC 824]
GTTTGTTAACGATAACAATA
>CAC0804(pelA) Score=4.5 Pos=-106 [Clostridium acetobutylicum ATCC 824]
TAATGTAATTGTTAACGTTA
>CAC0359(rhiN) Score=5.7 Pos=-72 [Clostridium acetobutylicum ATCC 824]
TATTGATAACGTGAACACTA
>CAC0359(rhiN) Score=5.7 Pos=-195 [Clostridium acetobutylicum ATCC 824]
CTTTGTTAACGTTAACGTAA
# TF - NrdR: CAC1698
>CAC0480(nrdD) Score=4.5 Pos=0 [Clostridium acetobutylicum ATCC 824]
ATGCTAAATGTAGTAA
>CAC1047(nrdJ) Score=5.9 Pos=-65 [Clostridium acetobutylicum ATCC 824]
ATACAATATATAGTGT
>CAC1047(nrdJ) Score=5.3 Pos=-34 [Clostridium acetobutylicum ATCC 824]
CCACTATATATAGTTT
>CAC1195(ligA2) Score=5.5 Pos=-64 [Clostridium acetobutylicum ATCC 824]
ATACTATATATAGTGC
>CAC3277(nrdA) Score=4.4 Pos=-69 [Clostridium acetobutylicum ATCC 824]
AAGCGATATATTGTGG
>CAC0480(nrdD) Score=5 Pos=-32 [Clostridium acetobutylicum ATCC 824]
GTACAAGATATAGTGT
>CAC1195(ligA2) Score=5.5 Pos=-97 [Clostridium acetobutylicum ATCC 824]
AAACTATATATTGTGT
>CAC3277(nrdA) Score=5.4 Pos=-28 [Clostridium acetobutylicum ATCC 824]
ATACTACATATTGTGG
# TF - BirA: CAC0212, CAC0589
>CAC0212(birA) Score=9.1 Pos=-147 [Clostridium acetobutylicum ATCC 824]
TTGTAAAC----------------GTTTACAA
>CAC0211(bioY1) Score=9.1 Pos=-51 [Clostridium acetobutylicum ATCC 824]
TTGTAAAC----------------GTTTACAA
>CAC1360(bioY1) Score=8.9 Pos=-68 [Clostridium acetobutylicum ATCC 824]
TTGTTAAC----------------GTTAACAA
>CAC3456(bioY2) Score=9.1 Pos=-46 [Clostridium acetobutylicum ATCC 824]
TTGTAAAC----------------GTTTACAA
# TF - IscR: CAC1675
>CAC1675(iscR) Score=5.8 Pos=-41 [Clostridium acetobutylicum ATCC 824]
ACAAAGTAGAGTATTATTGTCGGAATTAA
>CAC3288(sufC) Score=5.4 Pos=-58 [Clostridium acetobutylicum ATCC 824]
TGAATTCCGACTTAAATGGTCAAGATTAA
# TF - XylR: CAC3673
>CAC3451(xynT) Score=7.1 Pos=-96 [Clostridium acetobutylicum ATCC 824]
ACTTTTTAAAGTGCTTTTTAAAAGT
>CAC3451(xynT) Score=5.6 Pos=-84 [Clostridium acetobutylicum ATCC 824]
GCTTTTTAAAAGTTATTGAAAAAGT
>CAC3673(xylR) Score=6.8 Pos=-97 [Clostridium acetobutylicum ATCC 824]
ACTTTATAAAACAACTTTATAAAGG
>CAC2612(xylB) Score=7.2 Pos=-50 [Clostridium acetobutylicum ATCC 824]
ACTTATTAAAGGATATTTAAAAAGT
>CAC2611(CAC2611) Score=7.1 Pos=-109 [Clostridium acetobutylicum ATCC 824]
ACTTATTAAACAAACTTTAAAAACA
# TF - NagR: CAC0189
>CAC0189(nagR) Score=5.9 Pos=-80 [Clostridium acetobutylicum ATCC 824]
AAATTGGTATATACAACATG
# TF - SdaR: CAC2833
>CAC2835(grtP) Score=6.6 Pos=-119 [Clostridium acetobutylicum ATCC 824]
TTTTGTGCAATTGAACAAAA
# TF - MntR: CAC2616
>CAP0063(mntH) Score=6.2 Pos=-78 [Clostridium acetobutylicum ATCC 824]
AAATTTAGTTTAATCTAACTTT
# TF - HcpR: CAC0884
>CAC0758 Score=4.6 Pos=-133 [Clostridium acetobutylicum ATCC 824]
TCGTAACGAAGGATACCG
>CA_C3428(hcp) Score=5.8 Pos=-107 [Clostridium acetobutylicum ATCC 824]
TAGTAACCAATGTTACAG
>CAC0885(frdX) Score=5.9 Pos=-101 [Clostridium acetobutylicum ATCC 824]
GTGTAACATATGTTACTG
>CAC0884(hcpR) Score=5.9 Pos=-40 [Clostridium acetobutylicum ATCC 824]
CAGTAACATATGTTACAC
>CA_C2750(hcp) Score=5.8 Pos=-88 [Clostridium acetobutylicum ATCC 824]
AAGTAACAATTGTTACGG
>CAC0362(Cbei_4355) Score=5.9 Pos=-83 [Clostridium acetobutylicum ATCC 824]
TAGTAACATAAGTTACAG