# TF - Caur_3587: RoseRS_1223 >RoseRS_1224(ubiE) Score=6.5 Pos=-71 [Roseiflexus sp. RS-1] ATATTGATGATCTTCAATAT >RoseRS_1223(Caur_3587) Score=6.5 Pos=-22 [Roseiflexus sp. RS-1] ATATTGACATTCTTCAATAT # TF - MhpR: RoseRS_2571 >RoseRS_2569(hpaB) Score=5.8 Pos=-229 [Roseiflexus sp. RS-1] CGTTCGACTATACCGAACA # TF - SufR: RoseRS_0707 >RoseRS_0707(sufR) Score=6.9 Pos=-61 [Roseiflexus sp. RS-1] TTTTTATTGACAATAGCCG # TF - Caur_3401: RoseRS_4304 >RoseRS_4303(acrB) Score=6.6 Pos=-136 [Roseiflexus sp. RS-1] ATTTTACTGTATAGTAGTCT # TF - NagR: RoseRS_4247 >RoseRS_4247(nagR) Score=6.7 Pos=-126 [Roseiflexus sp. RS-1] TTGTCAGTTCACTGAACTAATGA # TF - Caur_3448: RoseRS_0524 >RoseRS_0524(Caur_3448) Score=5.8 Pos=-34 [Roseiflexus sp. RS-1] CCGCTTAATCGTTTCACCGC >RoseRS_0524(Caur_3448) Score=5.3 Pos=-18 [Roseiflexus sp. RS-1] CCGCTTAATCGTTTCACCAT # TF - NrtR: RoseRS_0145 >RoseRS_2679(nadE) Score=5.8 Pos=-59 [Roseiflexus sp. RS-1] AAAGTGTTATACTGACACCAA >RoseRS_0145(nrtR) Score=5.5 Pos=-34 [Roseiflexus sp. RS-1] TTATTGTTGCAATGACACTAA >RoseRS_1316 Score=6.1 Pos=-41 [Roseiflexus sp. RS-1] ATAGTGTCAATATAACAATAA >RoseRS_0439(nadC) Score=6.6 Pos=-11 [Roseiflexus sp. RS-1] ATAGTGTAAAAATGACACTAA >RoseRS_0439(nadC) Score=6.2 Pos=-65 [Roseiflexus sp. RS-1] ATAGAGTAACATTGACACTAA # TF - Rex: RoseRS_4103 >RoseRS_2263(cyoA) Score=4.1 Pos=-131 [Roseiflexus sp. RS-1] TCGTGCAACTTTTCACGT >RoseRS_3257(bchY) Score=4.5 Pos=-56 [Roseiflexus sp. RS-1] TTGTGAATGTTATCACCT >RoseRS_0005(fpr) Score=3.8 Pos=-106 [Roseiflexus sp. RS-1] CTGTTCCATCCATCACAA >RoseRS_0596(Cagg_2669) Score=5.1 Pos=-51 [Roseiflexus sp. RS-1] TCGTGAAGTGTATCACGA >RoseRS_0596(Cagg_2669) Score=5 Pos=-73 [Roseiflexus sp. RS-1] TTGTGATTATTATTGCAA >RoseRS_2002(Cagg_1949) Score=4.6 Pos=-40 [Roseiflexus sp. RS-1] TTGTGCAAGATTTCACGT >RoseRS_0518(atpB) Score=4.4 Pos=-44 [Roseiflexus sp. RS-1] TTGTGAAAGTGTTCTCAA >RoseRS_1698(hepT) Score=5.3 Pos=-48 [Roseiflexus sp. RS-1] TTGTTCAGTATTTCACAA >RoseRS_4103(rex) Score=4.3 Pos=-157 [Roseiflexus sp. RS-1] TAGTGCTACACTTCACAT >RoseRS_2496(pckA) Score=5.3 Pos=-42 [Roseiflexus sp. RS-1] TCGTGATGTGTTTCACGA >RoseRS_0224(ctaB) Score=4.7 Pos=-116 [Roseiflexus sp. RS-1] TTGTGAAGTTTGACACAA # TF - LexA: RoseRS_0427 >RoseRS_0828(ssb) Score=4.3 Pos=-115 [Roseiflexus sp. RS-1] TGGAACATGCATGCTA >RoseRS_2821(parB) Score=4.6 Pos=-40 [Roseiflexus sp. RS-1] CCGAACACCTGTGCAG >RoseRS_0905(sbcC) Score=4.2 Pos=-34 [Roseiflexus sp. RS-1] ACGCGCATCTGTTCGA >RoseRS_3028(Cagg_1574) Score=4.9 Pos=-135 [Roseiflexus sp. RS-1] TAGAACAAATGTTCGA >RoseRS_3706(mutS) Score=4.7 Pos=-47 [Roseiflexus sp. RS-1] TAGAACATCGGTACGA >RoseRS_3438(uvrA) Score=4 Pos=-103 [Roseiflexus sp. RS-1] TCGCACGTCTGTTCAT >RoseRS_3118(recA) Score=4.3 Pos=-120 [Roseiflexus sp. RS-1] AAGAACCTTCGTGCTA >RoseRS_3118(recA) Score=5 Pos=-137 [Roseiflexus sp. RS-1] TAGCCCACTTGTGCGA >RoseRS_0046(Cagg_3684) Score=4.1 Pos=-86 [Roseiflexus sp. RS-1] ACGAACACCCGTTCAC >RoseRS_2425(ruvB) Score=4.7 Pos=-24 [Roseiflexus sp. RS-1] CCGCACACGTGTGCGG >RoseRS_4548(mutL) Score=4.4 Pos=-34 [Roseiflexus sp. RS-1] TCGCATACGTGTTCGC # RNA - Cobalamin >RoseRS_0557(btuR) Score=62 Pos=-361 [Roseiflexus sp. RS-1] AATGCAACGACCGTCGCGGTGACCCGCAGGGCCCGGATGCCAGGGCGTAAAGGTGGAAGCTGGTGCAAGTCCAGCGCTGTGCCGCAACTGTAACCGGTTCGTAGTGCCGGAAGCCAGGATGCCTGCCGCGATGTATGTTGTTCAGCC >RoseRS_3085 Score=65.4 Pos=-197 [Roseiflexus sp. RS-1] CAAGTGAATACCATCGCGGTGACCCGCAGGCCCGGATGCCAGGGCGTAAAGGTGGAAGCTGGTGTAAGTCCAGCGCTGTGCCGCAACTGTAACCGGTGACAATCACCGGAAGCCAGGACGCCTGCCGCGATGTTGAATGTGTTCGA >RoseRS_3103 Score=63.8 Pos=-344 [Roseiflexus sp. RS-1] TAAACCTTTCAAACGTCGCGGTGACCCGCAGGCCCGGATGCCAGGGCGTAAAGGTGGAAGCTGGTGCAAGTCCAGCGCTGTGCCGCAACTGTAACCGATCGTATCGTCGGAAGCCAGGATGCCTGCCGCGACACTGTGTGTTCGA # RNA - FMN >RoseRS_0969(ribE) Score=93.1 Pos=-385 [Roseiflexus sp. RS-1] AGAACCTTCGGGGCAGGGTGAGTCCGGCAGGGCTGCCGGGCAATTCCCGATCGGTGGTACAGCCCACGAGCATCGTGCCTCACGGCAATGTGCACGATCCGGTGAAACTCCGGAGCCGACCGTACAGTCGGGATGGAAGAAGGTTGACCG >RoseRS_2763(ribX) Score=97.3 Pos=-360 [Roseiflexus sp. RS-1] GCACGATCTTCGGGGCAGGGTGAAATTCCCGATCGGCGGTGATGTGCAGCATGCTGCACCAGCCCGCGAGCCGAAAGGCAGGAGACCGGTGCGAAGCCGGCGCCGACGGTTACAGTCCGGATGGGAGAAGATCGGC # RNA - Glycine >RoseRS_1526(gcvT) Score=52.5 Pos=-236 [Roseiflexus sp. RS-1] GACGACGGGCGTGGGAGAGAACCGCGCAAGCGGTCGCCGAAGGAGCAAGCCGGGGTTGCCGGACCCTGCGCGAATCTCTCAGGCGAAAGGACTGCGCCC >RoseRS_1526(gcvT) Score=53.3 Pos=-138 [Roseiflexus sp. RS-1] CTGACGACCCTCTGGAGAGCCTGTTCATACGGGCGCCGACGGAGTAACCCGTTATGCGGGGCATCTCTCAGGTCAACGGACAGAGGTCAGGCG # RNA - L10_leader >RoseRS_3328(rplJ) Score=55.2 Pos=-159 [Roseiflexus sp. RS-1] GATATATATGCTAAGCGCCGCAGACAGCGGGTGCGTTTGCTTAATGGCTGCGTGCCGCCCGCCGAGGCAGCTTCCCAGGTCGATGCGACTGTAAGTTCGCGGGTTGCTGCGTCTGTGCGCGGCAACCCGCGTTTTTATCTTCCAGAAA # RNA - SAM >RoseRS_0064(metH) Score=62.4 Pos=-151 [Roseiflexus sp. RS-1] GCTCATCCAGAGGAGTGGAGGGACCGGCCCGATGAAGCTCCGCCAACCCGTAGCCACTGGATCGAGCAGCCGGTGCGATACGCGCCGCTTCTCGACACTGGCAGGCTATAGGGTGGCAATTCCGGCAGCGCAGGCTGGAAGATGAGTGGT >RoseRS_1758(metY) Score=42.5 Pos=-411 [Roseiflexus sp. RS-1] TCTTATCCAGAGAGGCGGAGGGACCGGCCCGATGAAGCCTCGGCAACCTCCGGTGCAGGGTAAGACGT # RNA - T-box(Gly) >RoseRS_0862(glyS) Score=57.2 Pos=-241 [Roseiflexus sp. RS-1] ACGTGTGGCGTTGAACCAGAGAAGTACCTGCATGCGCTGCATCCAGCGAGCCGGGGAAGGTGCGAGCCTGGCAGTATGCGCAGCAGGGAAGGGCGCTGGGGAGCTGAATTACTTCGAGTGATCGTTCAGGACGTTGGTGCTGAACGGTAACTGGGGTGGAACCGCGTGTTGCCCGTCCCGTGC # RNA - T-box(Ile) >RoseRS_0727(ileS) Score=86.8 Pos=-302 [Roseiflexus sp. RS-1] CAAAGGCTGTGACGGAGACGAGTAGGCGGCAGTGAACCGGTCAGCGAGCGCGCGGGTGGTGAGAGGCGCGCCAGAGTTCGGTCGCCGAATATCACTCCTGAGCCGGGAGGTGAACGCGCCAGGCGGACAATCAGCGCGTCAGTAGCCTGCCCCGGTTGCGCCGACCGTTATCCCGGCGGAGGTGTGCTGGCGCCTCGATGAGTGCAGCCGACGGTGTATCGGCTGAATCAGGGTGGTACCGCGGGGTTTTCTACCTCGTCCCTGTTGG # RNA - T-box(Phe) >RoseRS_1036(pheS) Score=63.8 Pos=-296 [Roseiflexus sp. RS-1] ACAGGGCTGTGACGAAGCGAGTAGGCGGGTGAGAGCGGACAGAGAGCGAGGGCCAAAGGGTGGAAGCCGTCGCCGTGACTCCCCGCTGAAGTTCCCTTCTGAGCCGCGATGGGGAAAGGAAGTGGAGACTGCCTGGTCTCCGCAGGCGCCGAGTAGTCATCGCCGGTTGCCCGCCGTTAGCAGGGCTATGAGGGTAGGGTCGCGCTACGCGCCTCTGCCGAATCAGGGTGGTACCACGGGCCACGCCTCGTCCCTGGCGA # RNA - T-box(Thr) >RoseRS_0111 Score=80.9 Pos=-288 [Roseiflexus sp. RS-1] TCCGTTTGCGTTGACGAGGACGAGTAGCTGTGAGACCGCCTTCAGGGAGGGCGCGCCGATGACTGTGAGCGCACCCGGCGATAGATGCAGCGAAAACCACCTCCGAGCCGCTTCTTGAACGTCTCCGACAAGTATGGAAGCGCGGGTTCGCCCGATACAGCGATCACGAGGGAAAGCGTTGCGGCATGCTGACATGGGCCAGCGCAACGCTGTTCCAAACATGGGTGGAACCACGAAGCGACCCTTCGTCCCATCA # RNA - T-box(Trp) >RoseRS_1459(trpB) Score=57.4 Pos=-394 [Roseiflexus sp. RS-1] GTTAACGACTGTGAACGGGAAGAGTACGCACCAGGGCGCGGCTCAGCGAACCGGCGGACGGTGAGAGGTCGGTGCAGGCGACGGTGCGGAATGGGCCCGGGAGTTGCGGAGCGAACCGGCAACGTTGAGCGTTGTCCGCAGTAGTAGCCGCCGGAGACGCCACCGTTACAAGGGCGCGGGGTATCGCGTGCAATGCACGCCGTACTCGCTGAGGGCGTCACGTCTGAACGGCGTGGCGAACCGGGGTGGCACCGCGGAGGTTGTTTCAGCCTCTCGTCCCTGGA # RNA - glmS >RoseRS_4064(glmS) Score=14.1 Pos=-218 [Roseiflexus sp. RS-1] AGGCGTGCTGCCGCCTGTAAGCGCTCCGGGAAACCCATCCGGCGACGGATGGAAACAAAGCGCC # RNA - TPP >RoseRS_1028(tenA) Score=60.4 Pos=-221 [Roseiflexus sp. RS-1] TACCGTTCCGTAGGGGCGCTTCGCTGACAGAGCGAGGCTGAGAAGTTACCCTTCGCACCTGATCCGGGTAATGCCGGCGTAGGAAATCGGAACCGGTCATCGG >RoseRS_0668(COG0011) Score=59.6 Pos=-218 [Roseiflexus sp. RS-1] AGGGGAGCCAGGAGAGCCTGGCTGAGAGTGCGGCCCCCACAATGCCGCTGACCCTTTGAACCTGACCTGGGTCATACCAGCGTAGGGAATG >RoseRS_2771(cytX) Score=73.8 Pos=-175 [Roseiflexus sp. RS-1] TAAGCGTGTATGAGGGAGCTCGGAGGACCGGGCTGAGAGGATGGTCAAATCCACCATCGACCTCATGAACCTGATCTGGGTAATACCAGCGAAGGGAATACACGGTAGTAAAGC >RoseRS_1927(thiE) Score=68.2 Pos=-183 [Roseiflexus sp. RS-1] ACGGCGCCACTGGGGGAGCCAGGCGAGCCTGGCTGAGAGTGCGGCCCCATCGATGCCGCAGACCCTTTGAACCTGACCTGGGTCATACCAGCGTAGGGAAGTGTCCAGACCAGAGT # TF - NrdR: RoseRS_0989 >RoseRS_4577(nrdJ) Score=4.4 Pos=-213 [Roseiflexus sp. RS-1] GCGCTATATTTAGGAA # TF - HrcA: RoseRS_3462 >RoseRS_3462(hrcA) Score=7.1 Pos=-190 [Roseiflexus sp. RS-1] CTAGCACTCAATAGTCGAGAGTGCTAA >RoseRS_4130(groES) Score=7.8 Pos=-75 [Roseiflexus sp. RS-1] TTAGCACTCTTCCGTCGAGAGTGCTAA >RoseRS_4130(groES) Score=6.4 Pos=-148 [Roseiflexus sp. RS-1] CTGGCACTCTTCCCTTTTGAGTGCTAA # TF - RhaR: RoseRS_2724 >RoseRS_2724(rhaR) Score=6.9 Pos=-74 [Roseiflexus sp. RS-1] TTGACA----TCGAAA >RoseRS_2724(rhaR) Score=7.6 Pos=-94 [Roseiflexus sp. RS-1] TCGAAA----TCGAAA >RoseRS_2724(rhaR) Score=6.9 Pos=-84 [Roseiflexus sp. RS-1] TCGAAA----TTGACA # TF - MntR: RoseRS_3986 >RoseRS_3070(mntA) Score=5.6 Pos=-42 [Roseiflexus sp. RS-1] GATTTAGGCAAGACAAAATT >RoseRS_4512(MntR2) Score=6.3 Pos=-85 [Roseiflexus sp. RS-1] ATTTTAGGAATGCCTAAATT >RoseRS_3986(mntR) Score=5.5 Pos=-29 [Roseiflexus sp. RS-1] GTTTTAGGTCTACCTAAATT # TF - FetR: RoseRS_3574 >RoseRS_4469(RoseRS_4469) Score=6 Pos=-141 [Roseiflexus sp. RS-1] TTATTAGGATATGCTAACCA >RoseRS_2294(fbpA) Score=6 Pos=-157 [Roseiflexus sp. RS-1] ATGTTAGAGTAATCTAACAA >RoseRS_3564(hmuV) Score=6 Pos=-109 [Roseiflexus sp. RS-1] TTATTAGACTATACTAACCA # TF - Zur: RoseRS_1293 >RoseRS_1258(znuA) Score=5.5 Pos=-124 [Roseiflexus sp. RS-1] TATAAAAACGAAGTATCAATA # TF - AcrR: RoseRS_0266 >RoseRS_0266(acrR) Score=6.7 Pos=-94 [Roseiflexus sp. RS-1] ATTCCTGACCGTTCGGTAAAGTGG # TF - Zur2: RoseRS_0593 >RoseRS_0598(Rcas_3900) Score=5.5 Pos=-159 [Roseiflexus sp. RS-1] CAAATGATAGACGAGATCATTTG >RoseRS_3105(yciC) Score=5.9 Pos=-40 [Roseiflexus sp. RS-1] GAACTGATATGATCTATCATTTG >RoseRS_0845(Rcas_3893) Score=5.8 Pos=-61 [Roseiflexus sp. RS-1] AAAATGGTAGTTGCTATCATTGA >RoseRS_3107(fmdB) Score=6 Pos=-3 [Roseiflexus sp. RS-1] TAAGTGATAGCATATATCACACT >RoseRS_0592(COG0701) Score=6.5 Pos=-33 [Roseiflexus sp. RS-1] ACAATGATATTTACTATCATTTA # TF - HcpR: RoseRS_0595 >RoseRS_0596(Rcas_3898) Score=6.5 Pos=-105 [Roseiflexus sp. RS-1] AACTTGCGCCAGCGCAACGA # TF - Cagg_3094: RoseRS_0051 >RoseRS_0051(Cagg_3094) Score=5.4 Pos=-189 [Roseiflexus sp. RS-1] TATTTGTATACAATCT >RoseRS_0051(Cagg_3094) Score=5.5 Pos=-24 [Roseiflexus sp. RS-1] GGATTGTATACAATCT # TF - Rcas_2304: RoseRS_1545 >RoseRS_1545(Rcas_2304) Score=6.4 Pos=-228 [Roseiflexus sp. RS-1] AGAAATTATAAAAATCTCC # TF - Rcas_3562: RoseRS_1355 >RoseRS_1355(Rcas_3562) Score=7.1 Pos=-47 [Roseiflexus sp. RS-1] TGTCCTGCATCCTATGCAATAAGACA