# TF - Caur_3587: RoseRS_1223
>RoseRS_1224(ubiE) Score=6.5 Pos=-71 [Roseiflexus sp. RS-1]
ATATTGATGATCTTCAATAT
>RoseRS_1223(Caur_3587) Score=6.5 Pos=-22 [Roseiflexus sp. RS-1]
ATATTGACATTCTTCAATAT
# TF - MhpR: RoseRS_2571
>RoseRS_2569(hpaB) Score=5.8 Pos=-229 [Roseiflexus sp. RS-1]
CGTTCGACTATACCGAACA
# TF - SufR: RoseRS_0707
>RoseRS_0707(sufR) Score=6.9 Pos=-61 [Roseiflexus sp. RS-1]
TTTTTATTGACAATAGCCG
# TF - Caur_3401: RoseRS_4304
>RoseRS_4303(acrB) Score=6.6 Pos=-136 [Roseiflexus sp. RS-1]
ATTTTACTGTATAGTAGTCT
# TF - NagR: RoseRS_4247
>RoseRS_4247(nagR) Score=6.7 Pos=-126 [Roseiflexus sp. RS-1]
TTGTCAGTTCACTGAACTAATGA
# TF - Caur_3448: RoseRS_0524
>RoseRS_0524(Caur_3448) Score=5.8 Pos=-34 [Roseiflexus sp. RS-1]
CCGCTTAATCGTTTCACCGC
>RoseRS_0524(Caur_3448) Score=5.3 Pos=-18 [Roseiflexus sp. RS-1]
CCGCTTAATCGTTTCACCAT
# TF - NrtR: RoseRS_0145
>RoseRS_2679(nadE) Score=5.8 Pos=-59 [Roseiflexus sp. RS-1]
AAAGTGTTATACTGACACCAA
>RoseRS_0145(nrtR) Score=5.5 Pos=-34 [Roseiflexus sp. RS-1]
TTATTGTTGCAATGACACTAA
>RoseRS_1316 Score=6.1 Pos=-41 [Roseiflexus sp. RS-1]
ATAGTGTCAATATAACAATAA
>RoseRS_0439(nadC) Score=6.6 Pos=-11 [Roseiflexus sp. RS-1]
ATAGTGTAAAAATGACACTAA
>RoseRS_0439(nadC) Score=6.2 Pos=-65 [Roseiflexus sp. RS-1]
ATAGAGTAACATTGACACTAA
# TF - Rex: RoseRS_4103
>RoseRS_2263(cyoA) Score=4.1 Pos=-131 [Roseiflexus sp. RS-1]
TCGTGCAACTTTTCACGT
>RoseRS_3257(bchY) Score=4.5 Pos=-56 [Roseiflexus sp. RS-1]
TTGTGAATGTTATCACCT
>RoseRS_0005(fpr) Score=3.8 Pos=-106 [Roseiflexus sp. RS-1]
CTGTTCCATCCATCACAA
>RoseRS_0596(Cagg_2669) Score=5.1 Pos=-51 [Roseiflexus sp. RS-1]
TCGTGAAGTGTATCACGA
>RoseRS_0596(Cagg_2669) Score=5 Pos=-73 [Roseiflexus sp. RS-1]
TTGTGATTATTATTGCAA
>RoseRS_2002(Cagg_1949) Score=4.6 Pos=-40 [Roseiflexus sp. RS-1]
TTGTGCAAGATTTCACGT
>RoseRS_0518(atpB) Score=4.4 Pos=-44 [Roseiflexus sp. RS-1]
TTGTGAAAGTGTTCTCAA
>RoseRS_1698(hepT) Score=5.3 Pos=-48 [Roseiflexus sp. RS-1]
TTGTTCAGTATTTCACAA
>RoseRS_4103(rex) Score=4.3 Pos=-157 [Roseiflexus sp. RS-1]
TAGTGCTACACTTCACAT
>RoseRS_2496(pckA) Score=5.3 Pos=-42 [Roseiflexus sp. RS-1]
TCGTGATGTGTTTCACGA
>RoseRS_0224(ctaB) Score=4.7 Pos=-116 [Roseiflexus sp. RS-1]
TTGTGAAGTTTGACACAA
# TF - LexA: RoseRS_0427
>RoseRS_0828(ssb) Score=4.3 Pos=-115 [Roseiflexus sp. RS-1]
TGGAACATGCATGCTA
>RoseRS_2821(parB) Score=4.6 Pos=-40 [Roseiflexus sp. RS-1]
CCGAACACCTGTGCAG
>RoseRS_0905(sbcC) Score=4.2 Pos=-34 [Roseiflexus sp. RS-1]
ACGCGCATCTGTTCGA
>RoseRS_3028(Cagg_1574) Score=4.9 Pos=-135 [Roseiflexus sp. RS-1]
TAGAACAAATGTTCGA
>RoseRS_3706(mutS) Score=4.7 Pos=-47 [Roseiflexus sp. RS-1]
TAGAACATCGGTACGA
>RoseRS_3438(uvrA) Score=4 Pos=-103 [Roseiflexus sp. RS-1]
TCGCACGTCTGTTCAT
>RoseRS_3118(recA) Score=4.3 Pos=-120 [Roseiflexus sp. RS-1]
AAGAACCTTCGTGCTA
>RoseRS_3118(recA) Score=5 Pos=-137 [Roseiflexus sp. RS-1]
TAGCCCACTTGTGCGA
>RoseRS_0046(Cagg_3684) Score=4.1 Pos=-86 [Roseiflexus sp. RS-1]
ACGAACACCCGTTCAC
>RoseRS_2425(ruvB) Score=4.7 Pos=-24 [Roseiflexus sp. RS-1]
CCGCACACGTGTGCGG
>RoseRS_4548(mutL) Score=4.4 Pos=-34 [Roseiflexus sp. RS-1]
TCGCATACGTGTTCGC
# RNA - Cobalamin
>RoseRS_0557(btuR) Score=62 Pos=-361 [Roseiflexus sp. RS-1]
AATGCAACGACCGTCGCGGTGACCCGCAGGGCCCGGATGCCAGGGCGTAAAGGTGGAAGCTGGTGCAAGTCCAGCGCTGTGCCGCAACTGTAACCGGTTCGTAGTGCCGGAAGCCAGGATGCCTGCCGCGATGTATGTTGTTCAGCC
>RoseRS_3085 Score=65.4 Pos=-197 [Roseiflexus sp. RS-1]
CAAGTGAATACCATCGCGGTGACCCGCAGGCCCGGATGCCAGGGCGTAAAGGTGGAAGCTGGTGTAAGTCCAGCGCTGTGCCGCAACTGTAACCGGTGACAATCACCGGAAGCCAGGACGCCTGCCGCGATGTTGAATGTGTTCGA
>RoseRS_3103 Score=63.8 Pos=-344 [Roseiflexus sp. RS-1]
TAAACCTTTCAAACGTCGCGGTGACCCGCAGGCCCGGATGCCAGGGCGTAAAGGTGGAAGCTGGTGCAAGTCCAGCGCTGTGCCGCAACTGTAACCGATCGTATCGTCGGAAGCCAGGATGCCTGCCGCGACACTGTGTGTTCGA
# RNA - FMN
>RoseRS_0969(ribE) Score=93.1 Pos=-385 [Roseiflexus sp. RS-1]
AGAACCTTCGGGGCAGGGTGAGTCCGGCAGGGCTGCCGGGCAATTCCCGATCGGTGGTACAGCCCACGAGCATCGTGCCTCACGGCAATGTGCACGATCCGGTGAAACTCCGGAGCCGACCGTACAGTCGGGATGGAAGAAGGTTGACCG
>RoseRS_2763(ribX) Score=97.3 Pos=-360 [Roseiflexus sp. RS-1]
GCACGATCTTCGGGGCAGGGTGAAATTCCCGATCGGCGGTGATGTGCAGCATGCTGCACCAGCCCGCGAGCCGAAAGGCAGGAGACCGGTGCGAAGCCGGCGCCGACGGTTACAGTCCGGATGGGAGAAGATCGGC
# RNA - Glycine
>RoseRS_1526(gcvT) Score=52.5 Pos=-236 [Roseiflexus sp. RS-1]
GACGACGGGCGTGGGAGAGAACCGCGCAAGCGGTCGCCGAAGGAGCAAGCCGGGGTTGCCGGACCCTGCGCGAATCTCTCAGGCGAAAGGACTGCGCCC
>RoseRS_1526(gcvT) Score=53.3 Pos=-138 [Roseiflexus sp. RS-1]
CTGACGACCCTCTGGAGAGCCTGTTCATACGGGCGCCGACGGAGTAACCCGTTATGCGGGGCATCTCTCAGGTCAACGGACAGAGGTCAGGCG
# RNA - L10_leader
>RoseRS_3328(rplJ) Score=55.2 Pos=-159 [Roseiflexus sp. RS-1]
GATATATATGCTAAGCGCCGCAGACAGCGGGTGCGTTTGCTTAATGGCTGCGTGCCGCCCGCCGAGGCAGCTTCCCAGGTCGATGCGACTGTAAGTTCGCGGGTTGCTGCGTCTGTGCGCGGCAACCCGCGTTTTTATCTTCCAGAAA
# RNA - SAM
>RoseRS_0064(metH) Score=62.4 Pos=-151 [Roseiflexus sp. RS-1]
GCTCATCCAGAGGAGTGGAGGGACCGGCCCGATGAAGCTCCGCCAACCCGTAGCCACTGGATCGAGCAGCCGGTGCGATACGCGCCGCTTCTCGACACTGGCAGGCTATAGGGTGGCAATTCCGGCAGCGCAGGCTGGAAGATGAGTGGT
>RoseRS_1758(metY) Score=42.5 Pos=-411 [Roseiflexus sp. RS-1]
TCTTATCCAGAGAGGCGGAGGGACCGGCCCGATGAAGCCTCGGCAACCTCCGGTGCAGGGTAAGACGT
# RNA - T-box(Gly)
>RoseRS_0862(glyS) Score=57.2 Pos=-241 [Roseiflexus sp. RS-1]
ACGTGTGGCGTTGAACCAGAGAAGTACCTGCATGCGCTGCATCCAGCGAGCCGGGGAAGGTGCGAGCCTGGCAGTATGCGCAGCAGGGAAGGGCGCTGGGGAGCTGAATTACTTCGAGTGATCGTTCAGGACGTTGGTGCTGAACGGTAACTGGGGTGGAACCGCGTGTTGCCCGTCCCGTGC
# RNA - T-box(Ile)
>RoseRS_0727(ileS) Score=86.8 Pos=-302 [Roseiflexus sp. RS-1]
CAAAGGCTGTGACGGAGACGAGTAGGCGGCAGTGAACCGGTCAGCGAGCGCGCGGGTGGTGAGAGGCGCGCCAGAGTTCGGTCGCCGAATATCACTCCTGAGCCGGGAGGTGAACGCGCCAGGCGGACAATCAGCGCGTCAGTAGCCTGCCCCGGTTGCGCCGACCGTTATCCCGGCGGAGGTGTGCTGGCGCCTCGATGAGTGCAGCCGACGGTGTATCGGCTGAATCAGGGTGGTACCGCGGGGTTTTCTACCTCGTCCCTGTTGG
# RNA - T-box(Phe)
>RoseRS_1036(pheS) Score=63.8 Pos=-296 [Roseiflexus sp. RS-1]
ACAGGGCTGTGACGAAGCGAGTAGGCGGGTGAGAGCGGACAGAGAGCGAGGGCCAAAGGGTGGAAGCCGTCGCCGTGACTCCCCGCTGAAGTTCCCTTCTGAGCCGCGATGGGGAAAGGAAGTGGAGACTGCCTGGTCTCCGCAGGCGCCGAGTAGTCATCGCCGGTTGCCCGCCGTTAGCAGGGCTATGAGGGTAGGGTCGCGCTACGCGCCTCTGCCGAATCAGGGTGGTACCACGGGCCACGCCTCGTCCCTGGCGA
# RNA - T-box(Thr)
>RoseRS_0111 Score=80.9 Pos=-288 [Roseiflexus sp. RS-1]
TCCGTTTGCGTTGACGAGGACGAGTAGCTGTGAGACCGCCTTCAGGGAGGGCGCGCCGATGACTGTGAGCGCACCCGGCGATAGATGCAGCGAAAACCACCTCCGAGCCGCTTCTTGAACGTCTCCGACAAGTATGGAAGCGCGGGTTCGCCCGATACAGCGATCACGAGGGAAAGCGTTGCGGCATGCTGACATGGGCCAGCGCAACGCTGTTCCAAACATGGGTGGAACCACGAAGCGACCCTTCGTCCCATCA
# RNA - T-box(Trp)
>RoseRS_1459(trpB) Score=57.4 Pos=-394 [Roseiflexus sp. RS-1]
GTTAACGACTGTGAACGGGAAGAGTACGCACCAGGGCGCGGCTCAGCGAACCGGCGGACGGTGAGAGGTCGGTGCAGGCGACGGTGCGGAATGGGCCCGGGAGTTGCGGAGCGAACCGGCAACGTTGAGCGTTGTCCGCAGTAGTAGCCGCCGGAGACGCCACCGTTACAAGGGCGCGGGGTATCGCGTGCAATGCACGCCGTACTCGCTGAGGGCGTCACGTCTGAACGGCGTGGCGAACCGGGGTGGCACCGCGGAGGTTGTTTCAGCCTCTCGTCCCTGGA
# RNA - glmS
>RoseRS_4064(glmS) Score=14.1 Pos=-218 [Roseiflexus sp. RS-1]
AGGCGTGCTGCCGCCTGTAAGCGCTCCGGGAAACCCATCCGGCGACGGATGGAAACAAAGCGCC
# RNA - TPP
>RoseRS_1028(tenA) Score=60.4 Pos=-221 [Roseiflexus sp. RS-1]
TACCGTTCCGTAGGGGCGCTTCGCTGACAGAGCGAGGCTGAGAAGTTACCCTTCGCACCTGATCCGGGTAATGCCGGCGTAGGAAATCGGAACCGGTCATCGG
>RoseRS_0668(COG0011) Score=59.6 Pos=-218 [Roseiflexus sp. RS-1]
AGGGGAGCCAGGAGAGCCTGGCTGAGAGTGCGGCCCCCACAATGCCGCTGACCCTTTGAACCTGACCTGGGTCATACCAGCGTAGGGAATG
>RoseRS_2771(cytX) Score=73.8 Pos=-175 [Roseiflexus sp. RS-1]
TAAGCGTGTATGAGGGAGCTCGGAGGACCGGGCTGAGAGGATGGTCAAATCCACCATCGACCTCATGAACCTGATCTGGGTAATACCAGCGAAGGGAATACACGGTAGTAAAGC
>RoseRS_1927(thiE) Score=68.2 Pos=-183 [Roseiflexus sp. RS-1]
ACGGCGCCACTGGGGGAGCCAGGCGAGCCTGGCTGAGAGTGCGGCCCCATCGATGCCGCAGACCCTTTGAACCTGACCTGGGTCATACCAGCGTAGGGAAGTGTCCAGACCAGAGT
# TF - NrdR: RoseRS_0989
>RoseRS_4577(nrdJ) Score=4.4 Pos=-213 [Roseiflexus sp. RS-1]
GCGCTATATTTAGGAA
# TF - HrcA: RoseRS_3462
>RoseRS_3462(hrcA) Score=7.1 Pos=-190 [Roseiflexus sp. RS-1]
CTAGCACTCAATAGTCGAGAGTGCTAA
>RoseRS_4130(groES) Score=7.8 Pos=-75 [Roseiflexus sp. RS-1]
TTAGCACTCTTCCGTCGAGAGTGCTAA
>RoseRS_4130(groES) Score=6.4 Pos=-148 [Roseiflexus sp. RS-1]
CTGGCACTCTTCCCTTTTGAGTGCTAA
# TF - RhaR: RoseRS_2724
>RoseRS_2724(rhaR) Score=6.9 Pos=-74 [Roseiflexus sp. RS-1]
TTGACA----TCGAAA
>RoseRS_2724(rhaR) Score=7.6 Pos=-94 [Roseiflexus sp. RS-1]
TCGAAA----TCGAAA
>RoseRS_2724(rhaR) Score=6.9 Pos=-84 [Roseiflexus sp. RS-1]
TCGAAA----TTGACA
# TF - MntR: RoseRS_3986
>RoseRS_3070(mntA) Score=5.6 Pos=-42 [Roseiflexus sp. RS-1]
GATTTAGGCAAGACAAAATT
>RoseRS_4512(MntR2) Score=6.3 Pos=-85 [Roseiflexus sp. RS-1]
ATTTTAGGAATGCCTAAATT
>RoseRS_3986(mntR) Score=5.5 Pos=-29 [Roseiflexus sp. RS-1]
GTTTTAGGTCTACCTAAATT
# TF - FetR: RoseRS_3574
>RoseRS_4469(RoseRS_4469) Score=6 Pos=-141 [Roseiflexus sp. RS-1]
TTATTAGGATATGCTAACCA
>RoseRS_2294(fbpA) Score=6 Pos=-157 [Roseiflexus sp. RS-1]
ATGTTAGAGTAATCTAACAA
>RoseRS_3564(hmuV) Score=6 Pos=-109 [Roseiflexus sp. RS-1]
TTATTAGACTATACTAACCA
# TF - Zur: RoseRS_1293
>RoseRS_1258(znuA) Score=5.5 Pos=-124 [Roseiflexus sp. RS-1]
TATAAAAACGAAGTATCAATA
# TF - AcrR: RoseRS_0266
>RoseRS_0266(acrR) Score=6.7 Pos=-94 [Roseiflexus sp. RS-1]
ATTCCTGACCGTTCGGTAAAGTGG
# TF - Zur2: RoseRS_0593
>RoseRS_0598(Rcas_3900) Score=5.5 Pos=-159 [Roseiflexus sp. RS-1]
CAAATGATAGACGAGATCATTTG
>RoseRS_3105(yciC) Score=5.9 Pos=-40 [Roseiflexus sp. RS-1]
GAACTGATATGATCTATCATTTG
>RoseRS_0845(Rcas_3893) Score=5.8 Pos=-61 [Roseiflexus sp. RS-1]
AAAATGGTAGTTGCTATCATTGA
>RoseRS_3107(fmdB) Score=6 Pos=-3 [Roseiflexus sp. RS-1]
TAAGTGATAGCATATATCACACT
>RoseRS_0592(COG0701) Score=6.5 Pos=-33 [Roseiflexus sp. RS-1]
ACAATGATATTTACTATCATTTA
# TF - HcpR: RoseRS_0595
>RoseRS_0596(Rcas_3898) Score=6.5 Pos=-105 [Roseiflexus sp. RS-1]
AACTTGCGCCAGCGCAACGA
# TF - Cagg_3094: RoseRS_0051
>RoseRS_0051(Cagg_3094) Score=5.4 Pos=-189 [Roseiflexus sp. RS-1]
TATTTGTATACAATCT
>RoseRS_0051(Cagg_3094) Score=5.5 Pos=-24 [Roseiflexus sp. RS-1]
GGATTGTATACAATCT
# TF - Rcas_2304: RoseRS_1545
>RoseRS_1545(Rcas_2304) Score=6.4 Pos=-228 [Roseiflexus sp. RS-1]
AGAAATTATAAAAATCTCC
# TF - Rcas_3562: RoseRS_1355
>RoseRS_1355(Rcas_3562) Score=7.1 Pos=-47 [Roseiflexus sp. RS-1]
TGTCCTGCATCCTATGCAATAAGACA