# TF - HexR: Veis_1778
>Veis_1778(hexR) Score=4.6 Pos=-44 [Verminephrobacter eiseniae EF01-2]
TGCAAACCCGGTTACAT
>Veis_4223(zwf) Score=5 Pos=-44 [Verminephrobacter eiseniae EF01-2]
ATGTAACGTGATTACAA
>Veis_4222(pgi) Score=4.5 Pos=-67 [Verminephrobacter eiseniae EF01-2]
TCGTAATCAAGTTACCA
# TF - NrdR: Veis_4247
>Veis_1496(nrdA) Score=5.5 Pos=-115 [Verminephrobacter eiseniae EF01-2]
ACACCATATATAGTGT
>Veis_1496(nrdA) Score=5.7 Pos=-147 [Verminephrobacter eiseniae EF01-2]
ACACTACAGGTAGTGT
# TF - PrpR: Veis_0649
>Veis_0651(prpD) Score=5.1 Pos=-45 [Verminephrobacter eiseniae EF01-2]
TTTGTCGACAAT
>Veis_0651(prpD) Score=4.7 Pos=-118 [Verminephrobacter eiseniae EF01-2]
GCTGTCGACAAT
# TF - HutC: Veis_3644
>Veis_3641(hisX) Score=5.4 Pos=-100 [Verminephrobacter eiseniae EF01-2]
CAACCTGTATAGACAGGAAT
# TF - IscR: Veis_2372
>Veis_2372(iscR) Score=4.2 Pos=-216 [Verminephrobacter eiseniae EF01-2]
TAATCCGACAAATTTGATAAGGATT
# TF - NtrC: Veis_3151
>Veis_3315(CHP02001) Score=4.4 Pos=-202 [Verminephrobacter eiseniae EF01-2]
CTCCCCGAATGGGTGCG
>Veis_3154(glnA) Score=5.1 Pos=-219 [Verminephrobacter eiseniae EF01-2]
TGCACGCATTTGGCGCA
>Veis_3154(glnA) Score=4.9 Pos=-196 [Verminephrobacter eiseniae EF01-2]
GGCCCCGAATTGGTGCG
# TF - ModE: Veis_4545
>Veis_2888(modA) Score=7.4 Pos=-44 [Verminephrobacter eiseniae EF01-2]
CGCTATTCCTTCAATGAATAGCG
# TF - LexA: Veis_4912
>Veis_4912(lexA) Score=5.5 Pos=-56 [Verminephrobacter eiseniae EF01-2]
TACTGGATTGAAAAACAGTT
>Veis_4912(lexA) Score=5.9 Pos=-75 [Verminephrobacter eiseniae EF01-2]
AACTGGTTAAAAATACAGCT
>Veis_1664(parE) Score=5 Pos=-52 [Verminephrobacter eiseniae EF01-2]
AACTGTTTTTTTATCCAGCT
>Veis_0355(recA) Score=4.6 Pos=-47 [Verminephrobacter eiseniae EF01-2]
TACTGTTCAAGCATCCAGCT
# TF - FadP: Veis_1225
>Veis_1792(fadB) Score=4.6 Pos=-40 [Verminephrobacter eiseniae EF01-2]
ACGCACGCCCGTTCTT
>Veis_2104(acdQ) Score=5.3 Pos=-49 [Verminephrobacter eiseniae EF01-2]
ACGAACGATCGTGCTA
>Veis_1225(fadP) Score=5.7 Pos=31 [Verminephrobacter eiseniae EF01-2]
TAGAACGATCGTTCTT
>Veis_3981(etfD) Score=5 Pos=-103 [Verminephrobacter eiseniae EF01-2]
TGGAACGGTCGTTCGC
# TF - VanR: Veis_1372
>Veis_1485(vanA) Score=4.1 Pos=-82 [Verminephrobacter eiseniae EF01-2]
TGTGTACA
>Veis_1485(vanA) Score=4.1 Pos=1 [Verminephrobacter eiseniae EF01-2]
TGTATCCA
# TF - PaaR: Veis_3950
>Veis_3942(paaF) Score=5.5 Pos=-102 [Verminephrobacter eiseniae EF01-2]
ATCTACCGCACGGTCGGTCAAT
# TF - Zur2: Veis_3389
>Veis_3389(zur2) Score=6.1 Pos=-98 [Verminephrobacter eiseniae EF01-2]
TTTTTCATGGGCCAGATGATAGT
>Veis_3390(znuC) Score=6.1 Pos=-143 [Verminephrobacter eiseniae EF01-2]
ACTATCATCTGGCCCATGAAAAA
# RNA - TPP
>Veis_1523(thiC) Score=54.3 Pos=-224 [Verminephrobacter eiseniae EF01-2]
GGCCGCTGCTCCGGGGTGCGCGCAAGCGCTGAGATGCGAGGCGATGCCGAAGAAATTCGGCTGGCCTGGCGAACCCGACGAACTTGATCCGGTTCATACCGGCGGAAGAAGAGCCGACCTCCTTGCC
# TF - HrcA: Veis_1050
>Veis_4476(rpoH) Score=6.6 Pos=-72 [Verminephrobacter eiseniae EF01-2]
TTGGCACTCGATCGCAGAGAGTGCTAA
>Veis_2566(groS) Score=6.8 Pos=-110 [Verminephrobacter eiseniae EF01-2]
TTAGCACTCTCCGCTGGGGAGTGCTAA
# TF - CadR-PbrR: Veis_2831
>Veis_2983(czcD) Score=6.2 Pos=-57 [Verminephrobacter eiseniae EF01-2]
ACCCTAGAGTTGCTACAGGGT
>Veis_1666(czcD) Score=4.7 Pos=-68 [Verminephrobacter eiseniae EF01-2]
ACCATCGATCGACTCCAGGGT
# RNA - SAH_riboswitch
>Veis_0656(ahcY) Score=46.2 Pos=-155 [Verminephrobacter eiseniae EF01-2]
GCTCCGAGGAGCGTTGCAGCGCCTCCCACCGGCAGGGCCGGCGGGGCGTGAGGCTCGGGCATCATCTGGCAACGACGCTCATCCACA
# TF - Aave_3515: Veis_1313
>Veis_1310(Veis_1310) Score=5.8 Pos=-100 [Verminephrobacter eiseniae EF01-2]
GATTGTTCAACAATC
>Veis_1314(COG3665) Score=5.1 Pos=-12 [Verminephrobacter eiseniae EF01-2]
GGTTGTTCAACAATG
# TF - Daci_3836: Veis_0841
>Veis_0832(uahA) Score=4.8 Pos=-47 [Verminephrobacter eiseniae EF01-2]
GCTGGGATACAAGA
>Veis_0836(Lcho_3026) Score=5.2 Pos=-76 [Verminephrobacter eiseniae EF01-2]
TCTTGAATACAAGA
# TF - PhnR2: Veis_1095
>Veis_1095(phnR2) Score=5 Pos=6 [Verminephrobacter eiseniae EF01-2]
ACTGTTGACAAT
>Veis_0970(phnS) Score=4.7 Pos=-170 [Verminephrobacter eiseniae EF01-2]
ACTGTTGACAGT
# TF - Bpro_5109: Veis_4515
>Veis_4515(Bpro_5109) Score=5.8 Pos=-34 [Verminephrobacter eiseniae EF01-2]
AAATGACTACGAATACATTT
# TF - MetR: Veis_4448
>Veis_4447(metE) Score=5.2 Pos=-72 [Verminephrobacter eiseniae EF01-2]
ATGAATACTATTCAA
>Veis_4448(metR) Score=5.2 Pos=-13 [Verminephrobacter eiseniae EF01-2]
TTGAATAGTATTCAT
# TF - EutR: Veis_2152
>Veis_2152(eutR) Score=5.5 Pos=-62 [Verminephrobacter eiseniae EF01-2]
ATTGGACTAGGACAAT
>Veis_2153(ehuB) Score=5.5 Pos=-115 [Verminephrobacter eiseniae EF01-2]
ATTGTCCTAGTCCAAT
>Veis_2151(eutB) Score=4.9 Pos=-72 [Verminephrobacter eiseniae EF01-2]
CGTGTCCTAGGACAAT
# TF - ModE2: Veis_3515
>Veis_3515(modE2) Score=6 Pos=-212 [Verminephrobacter eiseniae EF01-2]
TACGTCGTATTCCATCGGATATGTCAAA
# TF - Vapar_5644: Veis_1588
>Veis_1595(PF07681) Score=10.4 Pos=-143 [Verminephrobacter eiseniae EF01-2]
GCTTGTCATGGT-(12)-TCTTGCCCCTTA-(4)-AAACTGCCAGAT
# TF - Veis_4721: Veis_4721
>Veis_4498(potD) Score=11 Pos=-147 [Verminephrobacter eiseniae EF01-2]
AAATGGACTG-(13)-AAATGGGTAT-(6)-CAAGCCACTG
# TF - Veis_0044: Veis_0044
>Veis_0044(Veis_0044) Score=10.4 Pos=-26 [Verminephrobacter eiseniae EF01-2]
AATTGGCCCC-(14)-TAATGGACAT-(6)-GGGGCCAGAT
>Veis_0045(rbsB) Score=12.6 Pos=-153 [Verminephrobacter eiseniae EF01-2]
ATCTGGCCCC-(14)-TACTGGACCT-(6)-GGGGCCAATT
>Veis_0043(iolE) Score=13.5 Pos=-158 [Verminephrobacter eiseniae EF01-2]
AACTGGCTCC-(14)-TTCTGGAGCT-(6)-AGAACCAAGG
# TF - UxuR2: Veis_1542, Veis_0743
>Veis_1542(uxuR2) Score=5.1 Pos=-62 [Verminephrobacter eiseniae EF01-2]
GAATTGGCCTTACCAATTT
>Veis_0743(uxuR2-3) Score=4.9 Pos=-38 [Verminephrobacter eiseniae EF01-2]
CGATTGGCCTGACCATTGA
>Veis_3567(uxuR3) Score=5.3 Pos=-25 [Verminephrobacter eiseniae EF01-2]
TAATTGGTCTATCCAATTT
# TF - UxuR3: Veis_3567
>Veis_3567(uxuR3) Score=5 Pos=-66 [Verminephrobacter eiseniae EF01-2]
CTAGTGGTAAACCACTAT
# TF - TauR: Veis_4287
>Veis_4286(tauA) Score=6.5 Pos=-162 [Verminephrobacter eiseniae EF01-2]
CTGGCTCCAT-------------CTGGTACTTT
>Veis_4289(tauY) Score=5 Pos=-239 [Verminephrobacter eiseniae EF01-2]
GTGCGCCAGG-------------CTGGCACGCC
>Veis_4290(odpA) Score=6.6 Pos=-156 [Verminephrobacter eiseniae EF01-2]
CTGGCCCTGC-------------TTGGCTCTTC
# TF - SdhR: Veis_4355
>Veis_4356(mdh) Score=7.2 Pos=-199 [Verminephrobacter eiseniae EF01-2]
GATCATATCTTATATAAGACATAAGA
>Veis_3088(aceA) Score=6.4 Pos=-116 [Verminephrobacter eiseniae EF01-2]
TTTCATCTCTTCTATAAGACATAAGA
>Veis_4355(sdhR) Score=7.2 Pos=-33 [Verminephrobacter eiseniae EF01-2]
TCTTATGTCTTATATAAGATATGATC