# TF - PhhR: PP4489
>PP4490(phhA) Score=5.2 Pos=-212 [Pseudomonas putida KT2440]
TCGTAAAGATAAGCTGACAA
>PP4490(phhA) Score=5.4 Pos=-139 [Pseudomonas putida KT2440]
TTGTAAAATTATCGTTACGA
>PP4489(phhR) Score=5.4 Pos=-138 [Pseudomonas putida KT2440]
TCGTAACGATAATTTTACAA
>PP4489(phhR) Score=5.2 Pos=-65 [Pseudomonas putida KT2440]
TTGTCAGCTTATCTTTACGA
# TF - HexR: PP_1021
>PP1010(edd) Score=7 Pos=-142 [Pseudomonas putida KT2440]
ATtTTGT-------ACAACga
>PP1022(zwf) Score=7.8 Pos=-85 [Pseudomonas putida KT2440]
ATGTTGT-------ACTACAT
>PP1010(edd) Score=7.5 Pos=-203 [Pseudomonas putida KT2440]
TTGTTGT-------ACAAGAT
>PP_1021(hexR) Score=7.8 Pos=-138 [Pseudomonas putida KT2440]
ATGTAGT-------ACAACAT
>PP1009(gapA) Score=7 Pos=-145 [Pseudomonas putida KT2440]
TCGTTGT-------ACAAAAT
>PP1009(gapA) Score=7.5 Pos=-82 [Pseudomonas putida KT2440]
ATCTTGT-------ACAACAA
# TF - DesT: PP4859
>PP4174(fabA) Score=6 Pos=-149 [Pseudomonas putida KT2440]
AGTGCACACCTGTACTTC
>PP1844(plsC) Score=5.6 Pos=-48 [Pseudomonas putida KT2440]
AGTGCACACCCGTACACT
# TF - HexR1: PP5350
>PP0339(aceE) Score=5.7 Pos=-177 [Pseudomonas putida KT2440]
ATGTAGTTTTACTACTA
>PP0339(aceE) Score=6.3 Pos=-125 [Pseudomonas putida KT2440]
ATGTAGTAAAACTACAA
>PP5350(hexR1) Score=6.3 Pos=-60 [Pseudomonas putida KT2440]
ATGTAGTATAACTACAA
>PP5351(zwf) Score=6.3 Pos=-45 [Pseudomonas putida KT2440]
TTGTAGTTATACTACAT
# TF - BirA: PP0437
>PP0362(bioB) Score=8.6 Pos=-127 [Pseudomonas putida KT2440]
TTGTAAACC---------------AGTTGACAG
>PP0361(COG1040) Score=8.6 Pos=5 [Pseudomonas putida KT2440]
CTGTCAACT---------------GGTTTACAA
# TF - NrdR: PP_0513
>PP1179(nrdA) Score=3.4 Pos=-428 [Pseudomonas putida KT2440]
CCGCATTATCTTGTAT
>PP1179(nrdA) Score=5.6 Pos=-397 [Pseudomonas putida KT2440]
CCACTAGATATAGGGG
>PP2139(topA) Score=5.7 Pos=-73 [Pseudomonas putida KT2440]
CCACTATATATAGCGG
>PP1177(nrdB) Score=4.7 Pos=-343 [Pseudomonas putida KT2440]
GCACAACATATAGGTT
>PP1177(nrdB) Score=3.8 Pos=-375 [Pseudomonas putida KT2440]
ACACCATATGATGTGC
# TF - SahR: PP4966
>PP4966(sahR) Score=7.2 Pos=-62 [Pseudomonas putida KT2440]
ATATCAAAACTTTTTGATAT
# TF - NikR: PP3341
>PP3342(nikA) Score=7.4 Pos=-74 [Pseudomonas putida KT2440]
GTAAGAT--------------ATCATAC
>PP3341(NikR) Score=7.4 Pos=-41 [Pseudomonas putida KT2440]
GTATGAT--------------ATCTTAC
# TF - Zur: PP0119
>PP0120(znuA) Score=4.7 Pos=-45 [Pseudomonas putida KT2440]
GAGACGTTATTATGTTACCTGTT
>PP0119(zur) Score=4.2 Pos=-122 [Pseudomonas putida KT2440]
AACAGGTAACATAATAACGTCTC
>PP1446(omr) Score=5.3 Pos=-53 [Pseudomonas putida KT2440]
GTTATGTTATGTTGTAACACTAA
>PP5361(yciC) Score=5.1 Pos=-65 [Pseudomonas putida KT2440]
GTATTGTTACCTTATAACATTAT
>PP3320(hisI2) Score=5.1 Pos=-84 [Pseudomonas putida KT2440]
TAAGTGTTATAACATAACATCTA
>PP3321(PP3321) Score=5.3 Pos=-3 [Pseudomonas putida KT2440]
TAGATGTTATGTTATAACACTTA
>PP5362(PA5537) Score=5.8 Pos=-72 [Pseudomonas putida KT2440]
ATAATGTTATAAGGTAACAATAC
>PP0508(zbp) Score=5.7 Pos=-48 [Pseudomonas putida KT2440]
ATCTTGTTATAACATAACCCTAT
# TF - LldR: PP4734
>PP4735(lldP) Score=6.5 Pos=-62 [Pseudomonas putida KT2440]
AATTGGTCTTACCAATT
>PP4734(lldR) Score=6.1 Pos=-211 [Pseudomonas putida KT2440]
AATTGGTAAGACCAATT
# TF - NorR: PP0807
>PP0807(norR) Score=4.5 Pos=-29 [Pseudomonas putida KT2440]
TATAGTCATATCGACCCAT
>PP0807(norR) Score=5.3 Pos=-10 [Pseudomonas putida KT2440]
AGGAGTCCATATGACTACA
>PP0808(hmp) Score=4.5 Pos=-145 [Pseudomonas putida KT2440]
ATGGGTCGATATGACTATA
>PP0808(hmp) Score=5.3 Pos=-164 [Pseudomonas putida KT2440]
TGTAGTCATATGGACTCCT
>PP2840(nnrS) Score=4.2 Pos=-140 [Pseudomonas putida KT2440]
GCCAGTCTGAATGACCGCA
# TF - PrpR: PP2333
>PP2333(prpR) Score=4.8 Pos=-12 [Pseudomonas putida KT2440]
GGTGTCGACAAT
>PP2333(prpR) Score=5.8 Pos=-85 [Pseudomonas putida KT2440]
ATTGTCGACAAT
# TF - HutC: PP5035
>PP5036(hutF) Score=5.4 Pos=-40 [Pseudomonas putida KT2440]
GTATATGTATATACAAGTTA
>PP5033(hutU) Score=6.5 Pos=-82 [Pseudomonas putida KT2440]
ATGCTTGTACATACAAGTAA
>PP5035(hutC) Score=5.5 Pos=-88 [Pseudomonas putida KT2440]
TAACTTGTATATACATATAC
# TF - IscR: PP0841
>PP0433(erpA) Score=6.9 Pos=-32 [Pseudomonas putida KT2440]
ATTCTTGACCGATTTTCTCGGGAAA
>PP0841(iscR) Score=7 Pos=-70 [Pseudomonas putida KT2440]
ATAGTTGACTTAAATGCTCGGGAAT
# TF - GlcC: PP3744
>PP3745(glcD) Score=5.1 Pos=-107 [Pseudomonas putida KT2440]
AACTGGTAGGACCAGTC
>PP3745(glcD) Score=4.2 Pos=-182 [Pseudomonas putida KT2440]
TGCTGGTAGGACCACTT
>PP3744(glcC) Score=6.1 Pos=-77 [Pseudomonas putida KT2440]
GACTGGTCCTACCAGTT
>PP3744(glcC) Score=5.8 Pos=-2 [Pseudomonas putida KT2440]
AAGTGGTCCTACCAGCA
# TF - NtrC: PP5048
>PP2106(amtB2) Score=4.7 Pos=-72 [Pseudomonas putida KT2440]
GGCACCGATTCGGTGCA
>PP2688(ybdK) Score=4.1 Pos=-256 [Pseudomonas putida KT2440]
CGCCCTTTTTTGATGCG
>PP2688(ybdK) Score=4.5 Pos=-295 [Pseudomonas putida KT2440]
CGCCCCATTTCGGTTCA
>PP5046(glnA) Score=4.4 Pos=-205 [Pseudomonas putida KT2440]
CGCATCGTAAGGGTGCA
>PP5046(glnA) Score=5.3 Pos=-236 [Pseudomonas putida KT2440]
CGCACCCTATTGGTGCG
>PP5047(ntrB) Score=4.7 Pos=-257 [Pseudomonas putida KT2440]
TGCTCTATCTTGGTGCA
>PP5234(glnK) Score=4.6 Pos=-299 [Pseudomonas putida KT2440]
TGCACATTTTTCGCGCA
>PP5234(glnK) Score=5.4 Pos=-266 [Pseudomonas putida KT2440]
CGCACCGAAATTGTGCA
# TF - FruR: PP0792
>PP0792(fruR) Score=4.8 Pos=-171 [Pseudomonas putida KT2440]
GCTGAAACGTTTAATC
>PP0793(fruB) Score=4.5 Pos=-129 [Pseudomonas putida KT2440]
GATTAAACGTTTCAGC
# TF - RbsR: PP2457
>PP2454(rbsB) Score=6.4 Pos=-53 [Pseudomonas putida KT2440]
CAACGCAAACGTTTGCTATC
# TF - ModE: PP0360
>PP3828(modA) Score=6.3 Pos=-46 [Pseudomonas putida KT2440]
CGCTATATAGTTAAGGCTATAACG
# TF - LexA: PP2143
>PP4729(recN) Score=5.9 Pos=-41 [Pseudomonas putida KT2440]
ACTGTATAAATAACCAGA
>PP2143(lexA) Score=5.7 Pos=-46 [Pseudomonas putida KT2440]
ACTGTATATAATTCCAGT
>PP2143(lexA) Score=5.4 Pos=-27 [Pseudomonas putida KT2440]
ACTGTACAAAAAGACAGA
>PP3773(PF07867) Score=5.5 Pos=9 [Pseudomonas putida KT2440]
ACTGTACGAATATACAGC
>PP1974(uvrB) Score=5 Pos=-39 [Pseudomonas putida KT2440]
ACTGGCTAAATTTACAGC
>PP4616(PF07130) Score=5.9 Pos=-58 [Pseudomonas putida KT2440]
ACTGTATATAGATACAGT
>PP3901(PF07867) Score=5.3 Pos=-36 [Pseudomonas putida KT2440]
ACTGTCTATGCATACAGT
>PP1125(dinG) Score=5.4 Pos=-38 [Pseudomonas putida KT2440]
ACTGAAAATATATCCAGC
>PP2109(PA0922) Score=5.7 Pos=-32 [Pseudomonas putida KT2440]
GCTGTATATAAATACAGT
>PP1203(dinB) Score=5.3 Pos=-32 [Pseudomonas putida KT2440]
TCTGTATGAATTTACAGT
>PP4616(yebG) Score=5.9 Pos=-58 [Pseudomonas putida KT2440]
ACTGTATATAGATACAGT
>PP1629(recA) Score=4.8 Pos=-60 [Pseudomonas putida KT2440]
ACTGGCTACTTATACAGG
>PP0099(PF04055) Score=6 Pos=-31 [Pseudomonas putida KT2440]
ACTGTATATTAATACAGT
>PP2924(PSEEN2356) Score=5.3 Pos=-5 [Pseudomonas putida KT2440]
ACTGTATGAATACTCAGT
>PP2838(PF08774) Score=5.6 Pos=-46 [Pseudomonas putida KT2440]
TCTGTATGTATAAACAGT
>PP2452(PF07867) Score=5.3 Pos=-36 [Pseudomonas putida KT2440]
ACTGTATGTGCATACAGC
>PP4019(topB) Score=4.5 Pos=-86 [Pseudomonas putida KT2440]
CCTGTACATCCATCCAGA
# TF - LiuR: PP3539
>PP4063(aacS) Score=5.9 Pos=-80 [Pseudomonas putida KT2440]
CTTTACGTAAACGTAAAT
>PP4063(aacS) Score=6.5 Pos=-131 [Pseudomonas putida KT2440]
CTTTACGTTAACGTAAAC
>PP3539(liuR) Score=5.5 Pos=-59 [Pseudomonas putida KT2440]
CTTGACGTATACGTCAAC
>PP4064(liuA) Score=6.5 Pos=-97 [Pseudomonas putida KT2440]
GTTTACGTTAACGTAAAG
>PP4064(liuA) Score=5.9 Pos=-148 [Pseudomonas putida KT2440]
ATTTACGTTTACGTAAAG
# TF - PsrA: PP2144
>PP2144(psrA) Score=5 Pos=-54 [Pseudomonas putida KT2440]
GCTGAAACGTATGTTTCAAA
>PP2144(psrA) Score=5.7 Pos=-41 [Pseudomonas putida KT2440]
TTTCAAACACCTGTTTGTCT
>PP4195 Score=5.5 Pos=-83 [Pseudomonas putida KT2440]
TTTCAAACGACTGTTTGAGC
>PP2008(fadH) Score=5 Pos=-54 [Pseudomonas putida KT2440]
ATTCAAACGGCTGTTTAATG
>PP2136(fadB) Score=5.7 Pos=-161 [Pseudomonas putida KT2440]
AATCAAACGGGCGTATGAAT
>PP4202(etfB) Score=5.6 Pos=-392 [Pseudomonas putida KT2440]
ATACAAACGTTTGTTTGAAT
>PP3923 Score=5.3 Pos=-98 [Pseudomonas putida KT2440]
TTTCAAACAACCTTTTCAAA
>PP3923 Score=5.7 Pos=-85 [Pseudomonas putida KT2440]
TTTCAAACGCTTGTATGTTT
>PP4203(etfD) Score=5.9 Pos=-163 [Pseudomonas putida KT2440]
ATTCAAACAAACGTTTGTAT
>PP1623(rpoS) Score=5.1 Pos=-431 [Pseudomonas putida KT2440]
CTTCAAACGGTAGTTTGAAT
>PP0191(algQ) Score=5.2 Pos=-182 [Pseudomonas putida KT2440]
TATTAAACACTTGTATGAAC
>PP0368(acdH1) Score=5.8 Pos=-73 [Pseudomonas putida KT2440]
TTTCAAACAACTGTTTGATC
# TF - RutR: PP0594
>PP4286(COG0726) Score=6 Pos=-189 [Pseudomonas putida KT2440]
AGCTGACCAAACAGGCAGGT
>PP4293(tsx) Score=5.2 Pos=-231 [Pseudomonas putida KT2440]
TACTGACCGCTCAGTCAATG
# TF - VanR: PP3738
>PP3736(vanA) Score=5.3 Pos=-41 [Pseudomonas putida KT2440]
AATGGATCCATT
>PP3736(vanA) Score=4.8 Pos=-126 [Pseudomonas putida KT2440]
AATGGATCCACT
>PP3740(vanK) Score=4.8 Pos=-195 [Pseudomonas putida KT2440]
TGTGGATCCATT
# TF - PhnR: PP1727
>PP1727(phnR) Score=5.3 Pos=-28 [Pseudomonas putida KT2440]
TGGACTAGTCCA
>PP1727(phnR) Score=4.1 Pos=-251 [Pseudomonas putida KT2440]
TGGTCTAGGTCA
>PP1726(phnS) Score=5.3 Pos=-311 [Pseudomonas putida KT2440]
TGGACTAGTCCA
>PP1726(phnS) Score=5.3 Pos=-88 [Pseudomonas putida KT2440]
TGACCTAGACCA
# TF - RutR2
>PP4035(pydP) Score=6.6 Pos=-266 [Pseudomonas putida KT2440]
TCCTGTCAGTCCTGACAAGA
# TF - RutR3: PP4295
>PP4278(xdhA) Score=5.2 Pos=-93 [Pseudomonas putida KT2440]
TCTTGACCCTTGAGTCAGAA
>PP4278(xdhA) Score=4.7 Pos=-70 [Pseudomonas putida KT2440]
TATTGACCTGCTAGACAGGT
>PP4284(pbuT) Score=5.3 Pos=-114 [Pseudomonas putida KT2440]
TCTTGACCCATAAGTCAACA
>PP4293(tsx) Score=4.8 Pos=-74 [Pseudomonas putida KT2440]
AGCTGACTCAAAAGACAAAA
# RNA - yybP-ykoY
>PP0760(COG2119) Score=41.8 Pos=-229 [Pseudomonas putida KT2440]
CCGCACCGTCCTAGGGGAGTAGTCTCCCGCGAGCACCCAGCTCGCCCGGTACGCGTCAACATACTTGGTCCACAGACCATGGCGCGTGCGACCCACCATGCACGCCTGCATGGAGAGATCCGCATAGACGGATCGAGGGTTTGACAAGACCTATGACACGCAC
# RNA - TPP
>PP3185(tenA) Score=69.1 Pos=-192 [Pseudomonas putida KT2440]
GCGCCACCAAGGGGAGCCCGGCAATGGGCTGAGAAACCGCTGAACGCTACAGCGCGGTGACCCTTCGAACCTGATCCGGATCATGCCGGCGAAGGGATGGGGCTTGTAACCTGCCT
>PP4922(thiC) Score=79.8 Pos=-262 [Pseudomonas putida KT2440]
CATGTTCTTGTCGGGGTGCCTTGAAGCAAAGGCTGAGATCGCAGAGGTGCGGATCCCGTTGAACCTGATCAGGTTAGCGCCTGCGTAGGGAACAAGATTGCTCGCCTT
# RNA - mini-ykkC
>PP1701(ykkC1) Score=38.4 Pos=-78 [Pseudomonas putida KT2440]
ACGGTGAGGACGACCTCACGACGCACCGCGTGACCACTCCGGGGACGGCCCCA
# RNA - S15
>PP_4709(rpsO) Score=53.6 Pos=-41 [Pseudomonas putida KT2440]
ATTGGACCCCGCATGCGGGATCCGTTATCAGGAGAAGCCACATGGCCCTCAGCGTTGAAGAAAAAGCTCAGATCGTTGCCGAATATCAGCAAGCCGCC
# RNA - Cobalamin
>PP2418(btuF) Score=102.8 Pos=-226 [Pseudomonas putida KT2440]
GTCTACCATGCGGGCCGCCGGTTTCCACCACGGAACTAACAGGGAATCCCAGGCCTGCCAATACAGGCCAATCGGAACTGCCCCCGCAACTGTAGGTGCCGAGCCTGCTCCATCGATGCCACTGGGCCTGCCGCCCGGGAAGGCCGGAGCCGGGCCGTGACGCACCAGTCAGGAGACCTGCCGGCCTACATTCACCAACC
>PP1672(btuR) Score=87.4 Pos=-340 [Pseudomonas putida KT2440]
CTTCGCGGCGTGTTTCAGGTGCCCTGCCAGCCCCGACTGGGCAGGGTGAAACTGGGAAGCCGGTGGGCGCCAGCATGGCGCGATTCCGGCGCTGCCCCCGCAACGGTGGATGAGTAAAAGGCCGCGCAGGGCCACTGGATGCCAGCATCCGGGAAGGCGCGCAGGCCAGGGCCAAGGCCCACTCACAAGCCCGGAGACCGGCCTGATACTGCCAACGGCATCA
>PP3508(cobW) Score=100.8 Pos=-307 [Pseudomonas putida KT2440]
CGTAGCCTTGCCACTTCGAGGTTCTTCGGCCTGGCCGAAGCTAAGACGGGAACGCGGTACAAGCCGCGGCTGCCCCCGCAACTGTAAGCACCGACAACGGATCGACACAGCCACTGCGCCAACGCGCGGGAAGGCGTCATCCCGCCAGCCCGAACGGGGACATGGAACGGTGCAAGCCAGGAGACCTGCCTCGTCACGTTTTCGACTT
>PP2420(btuB) Score=119.2 Pos=-258 [Pseudomonas putida KT2440]
CAGATGCGCGCCAGTTTCAGGTGCCCTGCGCCGCCGCGCGCAGGGTGAAACGGGAAACCGGTGCGTCGTGTTGCCCACGACAAGTCCGGTGCTGCCCCCGCAACGGTAAGCGAGCGAACCCTTCGAGATACCACTGTGCTCAAGCATGGGAAGGTGAAGGTTTCATGCCCCTCGCAAGCCCGGAGACCGGCCTGGAGCTTCACTTGGCAA
# RNA - FMN
>PP0530(ribB) Score=111.7 Pos=-223 [Pseudomonas putida KT2440]
GGTCGGTCTTCAGGGCGGGGTGTAAGTCCCCACCGGCGGTAAATCGAAAGATGAGCCCGCGAGCGCCCCGACCATGTCGGGGGTCAGCAGATCTGGTGCAACTCCAGAGCCGACGGTCATAGTCCGGATGAAAGAAGGCGTCA
# TF - SdaR: PP3177
>PP3177(sdaR) Score=6 Pos=-4 [Pseudomonas putida KT2440]
CTTTGTGCTTTTGCACAGCG
>PP3176(grtT) Score=6 Pos=-107 [Pseudomonas putida KT2440]
CGCTGTGCAAAAGCACAAAG
# TF - PP0486: PP0486
>PP0486 Score=4.7 Pos=-53 [Pseudomonas putida KT2440]
ATAAATTCAACTCAAT
>PP0487(COG0730) Score=6.3 Pos=-88 [Pseudomonas putida KT2440]
ATTGAATCGACTCAAT
>PP0487(COG0730) Score=4.7 Pos=-109 [Pseudomonas putida KT2440]
ATTGAGTTGAATTTAT
>PP0486 Score=6.3 Pos=-74 [Pseudomonas putida KT2440]
ATTGAGTCGATTCAAT
# TF - GntR: PP3415
>PP3415(gntR) Score=5.9 Pos=-191 [Pseudomonas putida KT2440]
GTGAGATAGCGCTGTCTCGC
>PP3415(gntR) Score=6 Pos=-62 [Pseudomonas putida KT2440]
CTGAGACAGCGCTACCTTAG
>PP3416(gntK) Score=6 Pos=-164 [Pseudomonas putida KT2440]
CTAAGGTAGCGCTGTCTCAG
>PP3416(gntK) Score=5.9 Pos=-35 [Pseudomonas putida KT2440]
GCGAGACAGCGCTATCTCAC
>PP3417(gntT) Score=5.5 Pos=-88 [Pseudomonas putida KT2440]
CAAAGACAGCGCTACCCCAA
# TF - SoxR: PP2060
>PP2235(PF03992) Score=6.1 Pos=-71 [Pseudomonas putida KT2440]
ACCTTGACTTTACTTGAGGT
>PP2064(mexH) Score=6.2 Pos=-76 [Pseudomonas putida KT2440]
ACCTCAAGTAAAGTTGAGCT
>PP2506(PF09933) Score=6.3 Pos=-26 [Pseudomonas putida KT2440]
ACCTCGAGTTAAGTCAAGGT
>PP3522(PF01042) Score=6.6 Pos=-60 [Pseudomonas putida KT2440]
ACCTCGAGTTAACTTAAGGT
>PP2060(soxR) Score=6 Pos=-29 [Pseudomonas putida KT2440]
AGCTCAACTTAACTTTAGGT
# TF - CueR: PP0585
>PP5393(copZ2) Score=5.2 Pos=-71 [Pseudomonas putida KT2440]
ACCTTGTCATCGTGTCAAGGT
>PP0588(copZ) Score=5.3 Pos=-56 [Pseudomonas putida KT2440]
ACCTTGTCCTGATGGCAAGCT
>PP0586(copA) Score=5.3 Pos=-53 [Pseudomonas putida KT2440]
ACCTTGCCTGCGTGGCAAGGT
# TF - CadR-PbrR: PP5140
>PP1438(czcR) Score=5.8 Pos=-56 [Pseudomonas putida KT2440]
ACCCTGATGTCACTACAGGGT
>PP5139(cadA) Score=6.5 Pos=-58 [Pseudomonas putida KT2440]
ACCCTATAGTGGCTACAGGGT
# TF - PtxS: PP3380
>PP3380(ptxS) Score=6.6 Pos=-47 [Pseudomonas putida KT2440]
TATTGAAACCGGTTTCATCA
>PP3384(gadC) Score=6.4 Pos=-136 [Pseudomonas putida KT2440]
GCATGAAACCGGTTTCAAAA
>PP3379(kguE) Score=6.7 Pos=-31 [Pseudomonas putida KT2440]
AAATGAAACCGGTTTCATAA
# TF - PA2299: PP0204
>PP0204(PA2299) Score=6 Pos=-38 [Pseudomonas putida KT2440]
ACTTGTTATAACGAGT
# TF - PA1520: PP4283
>PP4297(gcl) Score=4.7 Pos=-35 [Pseudomonas putida KT2440]
TTGTATACAA
>PP4297(gcl) Score=4.7 Pos=-175 [Pseudomonas putida KT2440]
TTGTATACAA
>PP4309(PA0476) Score=4.8 Pos=-427 [Pseudomonas putida KT2440]
TTGTACACAA
>PP4309(PA0476) Score=4.7 Pos=-166 [Pseudomonas putida KT2440]
TTGTATACAA
>PP4643(PA2938) Score=4.3 Pos=-181 [Pseudomonas putida KT2440]
TTGTACACAC
>PP4643(PA2938) Score=4.7 Pos=-78 [Pseudomonas putida KT2440]
TTGTATACAA
>PP4284(PA1519) Score=4.8 Pos=-146 [Pseudomonas putida KT2440]
TTGTACACAA
>PP4284(PA1519) Score=4.6 Pos=-245 [Pseudomonas putida KT2440]
TTGTACACAG
>PP4283(PA1520) Score=4.6 Pos=-45 [Pseudomonas putida KT2440]
CTGTGTACAA
>PP4283(PA1520) Score=4.8 Pos=-144 [Pseudomonas putida KT2440]
TTGTGTACAA
>PP4296(PA1503) Score=4.7 Pos=-232 [Pseudomonas putida KT2440]
TTGTATACAA
>PP4296(PA1503) Score=4.7 Pos=-92 [Pseudomonas putida KT2440]
TTGTATACAA
>PP4286(PA1517) Score=4.7 Pos=-86 [Pseudomonas putida KT2440]
TTGTATACAA
>PP4286(PA1517) Score=4.8 Pos=-291 [Pseudomonas putida KT2440]
TTGTACACAA
>PP4285(PA1518) Score=4.7 Pos=-323 [Pseudomonas putida KT2440]
TTGTATACAA
>PP4285(PA1518) Score=4.8 Pos=-118 [Pseudomonas putida KT2440]
TTGTGTACAA
# TF - UreR: PP2254
>PP2255(dctA) Score=4.8 Pos=-85 [Pseudomonas putida KT2440]
ACCGGTAAGACCACA
>PP2255(dctA) Score=5.7 Pos=-160 [Pseudomonas putida KT2440]
ACTGGTCAGACCGGT
# TF - MetR: PP1063, PP2696
>PP4638(metF2) Score=5.2 Pos=-172 [Pseudomonas putida KT2440]
ATTGAGACAAACTCATT
>PP4637(metE2) Score=5.2 Pos=-72 [Pseudomonas putida KT2440]
AATGAGTTTGTCTCAAT
>PP4638(metF2) Score=4 Pos=-152 [Pseudomonas putida KT2440]
TTTGAGATGAACCCAAG
>PP4637(metE2) Score=4 Pos=-92 [Pseudomonas putida KT2440]
CTTGGGTTCATCTCAAA
>PP1469(dsbC) Score=4.7 Pos=-119 [Pseudomonas putida KT2440]
GATGAATGTTTTTCATG
>PP1063(metR) Score=3.8 Pos=17 [Pseudomonas putida KT2440]
CCTGAAAACCCTTCATG
>PP2699(PF08908) Score=4.1 Pos=-66 [Pseudomonas putida KT2440]
CTTCAATATCATTCATG
>PP2699(PF08908) Score=3.9 Pos=-76 [Pseudomonas putida KT2440]
TGTGAAATAACTTCAAT
>PP1063(metR) Score=5.3 Pos=-57 [Pseudomonas putida KT2440]
CATGAGAGAAACTCAAT
>PP2375(metH) Score=4.4 Pos=-98 [Pseudomonas putida KT2440]
CATGAGCAGTTTTCATG
# TF - EutR: PP4429
>PP4430(eutB) Score=4.9 Pos=-74 [Pseudomonas putida KT2440]
ATTGCCCTAGTACATT
>PP4429(eutR) Score=5.1 Pos=-75 [Pseudomonas putida KT2440]
ATTGCACTAGGACAAT
>PP4428(ehuB) Score=5.1 Pos=-184 [Pseudomonas putida KT2440]
ATTGTCCTAGTGCAAT
# TF - PP2948: PP2948
>PP2949(COG697) Score=13.6 Pos=-112 [Pseudomonas putida KT2440]
AACTGTGCTGG-(8)-GCATAACAGTT-(6)-AAGTGTATTGG
# TF - YdcR: PP3544
>PP3543(COG0348) Score=8.8 Pos=-98 [Pseudomonas putida KT2440]
ATCTGATATGGTTTT---------ATCTGAACCTGTGCT
# TF - GabR2: PP2542
>PP2543(gabP) Score=6 Pos=-78 [Pseudomonas putida KT2440]
TGATGTACAGGT
# TF - GcvR: PP0997
>PP0989(gcvH) Score=5.7 Pos=-166 [Pseudomonas putida KT2440]
CTGTAACGATATCATTCCAC
>PP0989(gcvH) Score=5.2 Pos=-266 [Pseudomonas putida KT2440]
ATGTATCGTTTTCGCTACGT
>PP0989(gcvH) Score=5.4 Pos=-247 [Pseudomonas putida KT2440]
TCGTAGCGAAAACGATACAC
# TF - HmgR: PP4622
>PP4621(hmgA) Score=6.4 Pos=-42 [Pseudomonas putida KT2440]
TTCGTAATCTGATTACGAT
>PP4622(hmgR) Score=6.4 Pos=-89 [Pseudomonas putida KT2440]
ATCGTAATCAGATTACGAA
# TF - PP2642: PP2642
>PP2641(COG2871 (NqrF)) Score=13.2 Pos=-11 [Pseudomonas putida KT2440]
AGCTGGACCA-(14)-AACTGGAGGT-(5)-TGGTCCTGGA
# TF - YjiR: PP5275
>PP5274(yjiS) Score=16.3 Pos=-50 [Pseudomonas putida KT2440]
TACAGTT-(17)-TTCAGTC-(13)-TTCTGTA-(23)-ATCTGTA
# TF - GguR: PP3603, PP4759
>PP4758(gguT) Score=5.1 Pos=-79 [Pseudomonas putida KT2440]
ATCTTGTCGTACAACTT
>PP3599(kdgD) Score=5.3 Pos=-71 [Pseudomonas putida KT2440]
AGGTTGTACGATAACTT
>PP1171(udh) Score=5.1 Pos=-43 [Pseudomonas putida KT2440]
AAGTCATACGACAACCT
>PP4759(gguR) Score=5.1 Pos=-104 [Pseudomonas putida KT2440]
AAGTTGTACGACAAGAT
>PP3603(gguR) Score=4.6 Pos=-47 [Pseudomonas putida KT2440]
ATGTGATCGTACAACCG
# TF - PhrR: PP0740
>PP0743(COG1090) Score=5.3 Pos=-136 [Pseudomonas putida KT2440]
TGTACAATGCCAAAATTATGTATA
>PP0742(COG3380) Score=5.8 Pos=-74 [Pseudomonas putida KT2440]
TATACATAATTTTGGCATTGTACA
>PP2511 Score=4.7 Pos=-35 [Pseudomonas putida KT2440]
TATACAAAAACTTGTACAAGCATG
>PP2511 Score=5.1 Pos=-23 [Pseudomonas putida KT2440]
TGTACAAGCATGAGAGGTTGTACA
>PP0741(COG3272) Score=5.6 Pos=-95 [Pseudomonas putida KT2440]
TATACAAAAATACTAGTTTGCATA
>PP2738(PF07366) Score=6.1 Pos=-94 [Pseudomonas putida KT2440]
TATACAAGACCGTTGACTTGTATA
>PP2738(PF07366) Score=5.7 Pos=-43 [Pseudomonas putida KT2440]
TGTACAACAATTCAATTTTGTACA
>PP0741(COG3272) Score=5 Pos=-45 [Pseudomonas putida KT2440]
TGTACAAGTTTCGAGTCACGTACA
# TF - PdxW2: PP5342
>PP5343(pdxO2) Score=14.4 Pos=-86 [Pseudomonas putida KT2440]
ATTGGACCT-(15)-AATGGATCT-(5)-AGAACCAAT
# TF - LexA2: PP3116
>PP3116(lexA2) Score=6.7 Pos=-17 [Pseudomonas putida KT2440]
GAGTACAAATGTGCTC
>PP3901(PA2381) Score=6.7 Pos=-85 [Pseudomonas putida KT2440]
GAGTACAAATGTGCTC