# TF - SdhR: Aave_2205
>Aave_2206(mdh) Score=7 Pos=-156 [Acidovorax avenae subsp. citrulli AAC00-1]
CATCATATCTTATATAAGACATAAGA
>Aave_2205(sdhR) Score=7 Pos=-20 [Acidovorax avenae subsp. citrulli AAC00-1]
TCTTATGTCTTATATAAGATATGATG
>Aave_2860(aceA) Score=7.5 Pos=-115 [Acidovorax avenae subsp. citrulli AAC00-1]
TTTTATGTCTTATATAAGACATAAGA
# TF - NsrR: Aave_1572
>Aave_1572(nsrR) Score=5.2 Pos=-66 [Acidovorax avenae subsp. citrulli AAC00-1]
GATGAATATTTTATGCAAT
>Aave_1571(dnrN) Score=5.2 Pos=-44 [Acidovorax avenae subsp. citrulli AAC00-1]
ATTGCATAAAATATTCATC
# TF - HexR: Aave_0941
>Aave_4581(pykA) Score=5.6 Pos=-47 [Acidovorax avenae subsp. citrulli AAC00-1]
TTGAAACCCGATTACAT
>Aave_0942(zwf) Score=5.1 Pos=-105 [Acidovorax avenae subsp. citrulli AAC00-1]
GTGAAACTCGGTAACAT
# TF - NrtR: Aave_4021
>Aave_0977(pncA) Score=5.1 Pos=-63 [Acidovorax avenae subsp. citrulli AAC00-1]
TTAGTTGCACAAATAAACTAA
# TF - NrdR: Aave_2993
>Aave_0864(nrdA) Score=5.8 Pos=-128 [Acidovorax avenae subsp. citrulli AAC00-1]
ACACTACATGTAGTGC
>Aave_0864(nrdA) Score=5 Pos=-96 [Acidovorax avenae subsp. citrulli AAC00-1]
CCACTACCTATAGCGT
# TF - Zur: Aave_2813
>Aave_2813(zur) Score=6.8 Pos=-50 [Acidovorax avenae subsp. citrulli AAC00-1]
ATAATGCAACACGATTGCATTAA
# TF - HutC: Aave_2966
>Aave_2969(hisX) Score=5.1 Pos=-85 [Acidovorax avenae subsp. citrulli AAC00-1]
AACCCTGTATAGACAGCATG
>Aave_2965(hutH) Score=5.2 Pos=-24 [Acidovorax avenae subsp. citrulli AAC00-1]
TGACTTGTATATACAGGAAA
>Aave_2965(hutH) Score=5.6 Pos=-102 [Acidovorax avenae subsp. citrulli AAC00-1]
CAGCCTGTATATACAAGTTG
# TF - IscR: Aave_2442
>Aave_2442(iscR) Score=5.7 Pos=-207 [Acidovorax avenae subsp. citrulli AAC00-1]
TTACCCGACAAAAACAATAGGGTTT
>Aave_2442(iscR) Score=5.4 Pos=-176 [Acidovorax avenae subsp. citrulli AAC00-1]
ATACTTGGGCGCAACACTCAAGAAA
# TF - NtrC: Aave_1445
>Aave_1442(glnA) Score=5.6 Pos=-207 [Acidovorax avenae subsp. citrulli AAC00-1]
TGCACGATTTTGGTGCG
>Aave_1442(glnA) Score=4.9 Pos=-184 [Acidovorax avenae subsp. citrulli AAC00-1]
GGCCCCGAATTGGTGCG
>Aave_0232(CHP02001) Score=5.1 Pos=-180 [Acidovorax avenae subsp. citrulli AAC00-1]
CGCACCATTCGGGTGCG
>Aave_0232(CHP02001) Score=4.6 Pos=-108 [Acidovorax avenae subsp. citrulli AAC00-1]
CGCACCCATTCGGAGCG
>Aave_2147(nrtA) Score=4.8 Pos=-282 [Acidovorax avenae subsp. citrulli AAC00-1]
CGCACGAAGAGGGTGCA
>Aave_2107(nasD) Score=4.4 Pos=-331 [Acidovorax avenae subsp. citrulli AAC00-1]
TGCACCGAAGCGGTTCA
# TF - RbsR: Aave_4199
>Aave_4196(rbsB) Score=6.8 Pos=-124 [Acidovorax avenae subsp. citrulli AAC00-1]
AAGCGCAAACGTTTGCGCAA
# TF - ModE: Aave_2030
>Aave_2028(modA) Score=7.3 Pos=-13 [Acidovorax avenae subsp. citrulli AAC00-1]
CGCTATTCAGTCGATGAATAGCG
# TF - LexA: Aave_2558
>Aave_0184(Aave_0184) Score=4.8 Pos=-33 [Acidovorax avenae subsp. citrulli AAC00-1]
CACTGTATTTACAATCAGTG
>Aave_2670(imuA) Score=5.4 Pos=-34 [Acidovorax avenae subsp. citrulli AAC00-1]
TGCTGTATATTTGAACAGTA
>Aave_2176(PF04055) Score=6.1 Pos=-42 [Acidovorax avenae subsp. citrulli AAC00-1]
AACTGTATATTCATACAGTT
>Aave_2734(imuA) Score=5.7 Pos=-43 [Acidovorax avenae subsp. citrulli AAC00-1]
TACTGTATAAATAATCAGTA
>Aave_0516(imuA) Score=5.9 Pos=-49 [Acidovorax avenae subsp. citrulli AAC00-1]
TACTGTTTATTCATACAGTG
>Aave_1340(parE) Score=4.1 Pos=-52 [Acidovorax avenae subsp. citrulli AAC00-1]
GGCTGTCTTTCCATCCAGTA
>Aave_4640(recA) Score=4.3 Pos=-98 [Acidovorax avenae subsp. citrulli AAC00-1]
TACTGGTCAAGCATCCAGCC
>Aave_2558(lexA) Score=6.1 Pos=-95 [Acidovorax avenae subsp. citrulli AAC00-1]
AACTGTTTAAAAATACAGTG
# TF - LiuR: Aave_4372
>Aave_4371(liuA) Score=6.6 Pos=-102 [Acidovorax avenae subsp. citrulli AAC00-1]
ATTGACGTTTACGTAAAC
>Aave_4372(liuR) Score=4.9 Pos=-70 [Acidovorax avenae subsp. citrulli AAC00-1]
ATTGACGTGCGCGTCAAC
>Aave_4371(liuA) Score=4.8 Pos=-96 [Acidovorax avenae subsp. citrulli AAC00-1]
GTTTACGTAAACGTAATG
>Aave_2867(paaH) Score=6.4 Pos=-42 [Acidovorax avenae subsp. citrulli AAC00-1]
ATTGACGTTTACGTCAAC
# TF - FadP: Aave_4090
>Aave_2880(fadB) Score=5.3 Pos=-41 [Acidovorax avenae subsp. citrulli AAC00-1]
AAGCACGACCGTTCTT
>Aave_2168(etfB) Score=5.3 Pos=-142 [Acidovorax avenae subsp. citrulli AAC00-1]
AAGCACGATCGTTCTT
>Aave_3139(etfD) Score=5.4 Pos=-121 [Acidovorax avenae subsp. citrulli AAC00-1]
AAGAACGATCGTTCGT
>Aave_0441 Score=5.3 Pos=-31 [Acidovorax avenae subsp. citrulli AAC00-1]
AAGAACGATCGTGCTT
>Aave_3439(acdQ) Score=5.3 Pos=-66 [Acidovorax avenae subsp. citrulli AAC00-1]
AAGCACGACCGTGCTA
# RNA - TPP
>Aave_0829(thiC) Score=54 Pos=-292 [Acidovorax avenae subsp. citrulli AAC00-1]
CGCCTGCTCCGGGGTGCACGTAGAGACTCGAAAGGTTTCTGGGCGTGCTGAGACGGCGGACCTGACCGCCGGAACCGCGAACTTGATCTGGTTAGTACCAGCGTAAGAAGAGCTGCAGCCGGGATTCC
>Aave_3068(thiO) Score=52.7 Pos=-170 [Acidovorax avenae subsp. citrulli AAC00-1]
GGACGAAACAGGGGTGCCGCGCCCGCCGGGCGCGGCTGAGAAAGACCCTCGGCACCCGATCCAGGTCATGCTGGCGTGGGGAGTTTCGACGGTGGACCGCC
>Aave_4517(PF04443) Score=50.5 Pos=-185 [Acidovorax avenae subsp. citrulli AAC00-1]
CCGCAACGCTCCGGGGTGCACGCTTGTGCTGAGATCCACACCCGAGAACTTGAACCGGGTCATTCCGGCGGAAGAAGAGCTGTCACCACCATC
# TF - HrcA: Aave_3593
>Aave_3894(rpoH) Score=6.5 Pos=-57 [Acidovorax avenae subsp. citrulli AAC00-1]
TTAGCACTCCCTCCAAGAGACTGCTAA
>Aave_0946(groS) Score=6.9 Pos=-123 [Acidovorax avenae subsp. citrulli AAC00-1]
TTAGCACTCGAAGCGGACGAGTGCTAA
# TF - GntR: Aave_2798
>Aave_2797(gntK) Score=6.1 Pos=-109 [Acidovorax avenae subsp. citrulli AAC00-1]
CTAGGATAGCGCTATCTTGC
>Aave_2798(gntR) Score=6.1 Pos=-55 [Acidovorax avenae subsp. citrulli AAC00-1]
GCAAGATAGCGCTATCCTAG
>Aave_2798(gntR) Score=6.1 Pos=-172 [Acidovorax avenae subsp. citrulli AAC00-1]
CTTGGATAGCGCTATCCGTT
# TF - SoxR: Aave_2276
>Aave_1362(mexE) Score=5.9 Pos=-185 [Acidovorax avenae subsp. citrulli AAC00-1]
ACCTCAACAATGGTTGAGGT
>Aave_2275(PF01042) Score=6.7 Pos=-85 [Acidovorax avenae subsp. citrulli AAC00-1]
ACCTCAAGTTTAGTTGAGGT
>Aave_2276(soxR) Score=6.7 Pos=-61 [Acidovorax avenae subsp. citrulli AAC00-1]
ACCTCAACTAAACTTGAGGT
# TF - CadR-PbrR: Aave_1816
>Aave_1815(cadA) Score=5.2 Pos=-328 [Acidovorax avenae subsp. citrulli AAC00-1]
ACCTTGAAGCGGCTTGAAGGT
# RNA - SAH_riboswitch
>Aave_0214(metH) Score=34.6 Pos=-143 [Acidovorax avenae subsp. citrulli AAC00-1]
CCTCCGAGGAGCGTTGCAGCGGCCCGTCCGCCGGCGTCGGTCACGACCGCCGCGGGCGCGCCGTCAGGCTCGGAGCCCGTGCCGAAGAATCGATGCCAACGACGCTCACCTGTCCT
>Aave_4060(ahcY) Score=42.5 Pos=-165 [Acidovorax avenae subsp. citrulli AAC00-1]
CCCTACCGAGGAGCGTTGCAGCGCCCTGATTCCCTGTCGCCCAGGGGGCAGCAGGACGCGAGGCTCGGGTCATCATTTTGCAACGACGCTCGCCCACG
# TF - CueR: Aave_0032
>Aave_0033(copZ) Score=4.9 Pos=-110 [Acidovorax avenae subsp. citrulli AAC00-1]
CCCCTGACATCATGGCAAGGT
>Aave_0034(copA) Score=4.9 Pos=-34 [Acidovorax avenae subsp. citrulli AAC00-1]
ACCTTGCCATGATGTCAGGGG
# TF - Aave_3515: Aave_3515
>Aave_3515(Aave_3515) Score=3.6 Pos=-219 [Acidovorax avenae subsp. citrulli AAC00-1]
CATTGATGAATCATC
>Aave_3515(Aave_3515) Score=5.3 Pos=-198 [Acidovorax avenae subsp. citrulli AAC00-1]
AATTGTTGAACAATT
>Aave_3514(COG2814) Score=3.6 Pos=-53 [Acidovorax avenae subsp. citrulli AAC00-1]
GATGATTCATCAATG
>Aave_3514(COG2814) Score=5.3 Pos=-74 [Acidovorax avenae subsp. citrulli AAC00-1]
AATTGTTCAACAATT
# TF - UreR: Aave_0212
>Aave_0212(ureR) Score=5.3 Pos=-38 [Acidovorax avenae subsp. citrulli AAC00-1]
ACTGGTCTGACCTGT
# TF - FruR2: Aave_4253
>Aave_4253(fruR2) Score=4.3 Pos=-206 [Acidovorax avenae subsp. citrulli AAC00-1]
ATTTGGTATCGATTCCAGAC
>Aave_4253(fruR2) Score=4 Pos=-16 [Acidovorax avenae subsp. citrulli AAC00-1]
TCATGGAATCGTTACCATGC
>Aave_4252(fruB) Score=4 Pos=-225 [Acidovorax avenae subsp. citrulli AAC00-1]
GCATGGTAACGATTCCATGA
>Aave_4252(fruB) Score=4.3 Pos=-35 [Acidovorax avenae subsp. citrulli AAC00-1]
GTCTGGAATCGATACCAAAT
# TF - Daci_0595: Aave_4434
>Aave_4435(PF01810) Score=15.1 Pos=-130 [Acidovorax avenae subsp. citrulli AAC00-1]
GAACTGTGTTG-(10)-CGGCACAGTTC-(15)-TGTCTGTATTG-(0)-GCACTGTAGCG
# TF - Aave_3430: Aave_3430
>Aave_3430(Aave_3430) Score=14.6 Pos=-161 [Acidovorax avenae subsp. citrulli AAC00-1]
GCAGGCACAGGCGG-(11)-AGGAGAACAGTGCG-(9)-GCCTCTGTTATGGT-(11)-CTGTCTGTATCTGT
>Aave_3431 Score=20 Pos=-151 [Acidovorax avenae subsp. citrulli AAC00-1]
ACAGATACAGACAG-(11)-ACCATAACAGAGGC-(9)-CGCACTGTTCTCCT-(11)-CCGCCTGTGCCTGC
# TF - GudR: Aave_3625
>Aave_3625(gudR) Score=5.9 Pos=-110 [Acidovorax avenae subsp. citrulli AAC00-1]
GGATGTTAACGTTAACATCC
>Aave_3624(tctC4) Score=5.9 Pos=-40 [Acidovorax avenae subsp. citrulli AAC00-1]
GGATGTTAACGTTAACATCC
# TF - GguR: Aave_2589
>Aave_2589(gguR) Score=5.3 Pos=-38 [Acidovorax avenae subsp. citrulli AAC00-1]
ATGTTGTCGTACAACGC
>Aave_2588(tctC1) Score=4.8 Pos=-38 [Acidovorax avenae subsp. citrulli AAC00-1]
CAGTTGTATGATGACGT
>Aave_2588(tctC1) Score=4.6 Pos=-31 [Acidovorax avenae subsp. citrulli AAC00-1]
ATGATGACGTACAACAT
>Aave_2590(udh) Score=5.3 Pos=-17 [Acidovorax avenae subsp. citrulli AAC00-1]
GCGTTGTACGACAACAT