# TF - RutR2: PA0436
>PA0443(pydP) Score=5.7 Pos=-273 [Pseudomonas aeruginosa PAO1]
TCCTGACCGGGGCGACAGGC
>PA0441(pydB) Score=7 Pos=-99 [Pseudomonas aeruginosa PAO1]
TCCTGTCAGCGCTGACAGGA
# TF - PhhR: PA0873
>PA0865(hpd) Score=4.4 Pos=-161 [Pseudomonas aeruginosa PAO1]
GCGTAAGGAATAGTTGCCAG
>PA0865(hpd) Score=5.6 Pos=-212 [Pseudomonas aeruginosa PAO1]
CTGTAAAGATAACTTTACGA
>PA0872(phhA) Score=5.2 Pos=-217 [Pseudomonas aeruginosa PAO1]
CCGTCAAGAATATGTGACAG
>PA0872(phhA) Score=5.5 Pos=-144 [Pseudomonas aeruginosa PAO1]
TCGTAAGGAAAACTTTACGA
>PA0873(phhR) Score=5.5 Pos=-159 [Pseudomonas aeruginosa PAO1]
TCGTAAAGTTTTCCTTACGA
>PA0873(phhR) Score=5.2 Pos=-86 [Pseudomonas aeruginosa PAO1]
CTGTCACATATTCTTGACGG
# TF - HexR: PA3184
>PA3183(zwf) Score=7.8 Pos=-81 [Pseudomonas aeruginosa PAO1]
ATGTTGT-----ACTACAT
>PA3194(edd) Score=7.9 Pos=-43 [Pseudomonas aeruginosa PAO1]
ATGTTGT-----ACAACAA
>PA3184(hexR) Score=7.8 Pos=-125 [Pseudomonas aeruginosa PAO1]
ATGTAGT-----ACAACAT
>PA3195(gapA) Score=7.9 Pos=-104 [Pseudomonas aeruginosa PAO1]
TTGTTGT-----ACAACAT
# TF - DesT: PA4890
>PA1610(fabA) Score=5.6 Pos=-153 [Pseudomonas aeruginosa PAO1]
AGTGAACATCTGTTCGCC
>PA4889(desC) Score=5.3 Pos=-73 [Pseudomonas aeruginosa PAO1]
AGTGAACGCTTGTTGACT
# TF - HexR1: PA5438
>PA5015(aceE) Score=6.2 Pos=-129 [Pseudomonas aeruginosa PAO1]
CTGTAGTAAAACTACAA
>PA5015(aceE) Score=5.7 Pos=-181 [Pseudomonas aeruginosa PAO1]
ATGTAGTTTTACTACTA
>PA5438(hexR1) Score=6.4 Pos=-45 [Pseudomonas aeruginosa PAO1]
TTGTAGTATAACTACAA
>PA5439(zwf) Score=6.4 Pos=-57 [Pseudomonas aeruginosa PAO1]
TTGTAGTTATACTACAA
>PA3185(aldE) Score=6 Pos=-67 [Pseudomonas aeruginosa PAO1]
ATGTAGTAAAACTACAC
# TF - BirA: PA4280
>PA0500(bioB) Score=7.5 Pos=-129 [Pseudomonas aeruginosa PAO1]
ATGTAGTCC--------------GGTTGACAG
# TF - NrtR: PA4916
>PA4917(nadD) Score=5.4 Pos=-69 [Pseudomonas aeruginosa PAO1]
ATAATTCATCACGTGAAATAA
>PA4918(pncA) Score=5.4 Pos=-61 [Pseudomonas aeruginosa PAO1]
TTATTTCACGTGATGAATTAT
# TF - NrdR: PA4057
>PA3011(topA) Score=5.7 Pos=-76 [Pseudomonas aeruginosa PAO1]
CCACTATATATAGCGG
>PA1156(nrdA) Score=4.9 Pos=-398 [Pseudomonas aeruginosa PAO1]
CCCCTATATCTTGGGT
>PA1156(nrdA) Score=5 Pos=-194 [Pseudomonas aeruginosa PAO1]
CCACTAGGTATTGTGT
>PA1920(nrdD) Score=5.1 Pos=-57 [Pseudomonas aeruginosa PAO1]
CCACAACATATTGTTG
>PA1920(nrdD) Score=4.5 Pos=-26 [Pseudomonas aeruginosa PAO1]
ACACATCATGTTGTGG
>PA5497(nrdJb) Score=4.6 Pos=-38 [Pseudomonas aeruginosa PAO1]
ACACAAGATATTGATT
>PA5497(nrdJb) Score=4.6 Pos=-7 [Pseudomonas aeruginosa PAO1]
TAACTAGATGTTGCGT
# TF - SahR: PA0547
>PA0547(sahR) Score=6.9 Pos=-62 [Pseudomonas aeruginosa PAO1]
ATATCAAAAATTTTTGATAC
# TF - Zur: PA5499
>PA5498(znuA) Score=4.6 Pos=-48 [Pseudomonas aeruginosa PAO1]
GAGACGTTATTATATTACCCGCT
>PA5499(zur) Score=3.8 Pos=-44 [Pseudomonas aeruginosa PAO1]
AGCGGGTAATATAATAACGTCTC
>PA0781(omr) Score=5 Pos=-121 [Pseudomonas aeruginosa PAO1]
AAAAAGAAATAATATAACATCCC
>PA5536(dksA2) Score=5.5 Pos=-43 [Pseudomonas aeruginosa PAO1]
TAATTGTTATAGTATAACGTTTT
>PA4838(PA4838) Score=5.1 Pos=-122 [Pseudomonas aeruginosa PAO1]
GAAATGATATACTATAACGCTAC
>PA5537(PA5537) Score=5.2 Pos=-92 [Pseudomonas aeruginosa PAO1]
AAAACGTTATACTATAACAATTA
>PA5539(folE2) Score=5.5 Pos=-63 [Pseudomonas aeruginosa PAO1]
AATACGTTATATTATAACATTCA
>PA3601(rpmE2) Score=5.5 Pos=-38 [Pseudomonas aeruginosa PAO1]
AATATGTAACTATATAACATTAT
>PA5538(amiA) Score=5.6 Pos=-59 [Pseudomonas aeruginosa PAO1]
TGAATGTTATAATATAACGTATT
>PA4063(zbp) Score=5.7 Pos=-51 [Pseudomonas aeruginosa PAO1]
AATTCGTTATAACGTAACAAACT
# TF - LldR: PA4769
>PA4769(lldR) Score=6.1 Pos=-219 [Pseudomonas aeruginosa PAO1]
AATTGGTAAGACCAATT
>PA4770(lldP) Score=6.5 Pos=-126 [Pseudomonas aeruginosa PAO1]
AATTGGTCTTACCAATT
# TF - NorR: PA2665
>PA2665(norR) Score=5 Pos=-55 [Pseudomonas aeruginosa PAO1]
ATAGGTCATAATGACTGCA
>PA2665(norR) Score=4.4 Pos=-10 [Pseudomonas aeruginosa PAO1]
AGAGGTCGAAATGACCACC
>PA2665(norR) Score=5.2 Pos=-30 [Pseudomonas aeruginosa PAO1]
CAGAGTCATTAGGACTGCA
>PA2664(hmp) Score=5 Pos=-118 [Pseudomonas aeruginosa PAO1]
TGCAGTCATTATGACCTAT
>PA2664(hmp) Score=4.4 Pos=-163 [Pseudomonas aeruginosa PAO1]
GGTGGTCATTTCGACCTCT
>PA2664(hmp) Score=5.2 Pos=-143 [Pseudomonas aeruginosa PAO1]
TGCAGTCCTAATGACTCTG
# TF - PrpR: PA0797
>PA0797(prpR) Score=4.7 Pos=-33 [Pseudomonas aeruginosa PAO1]
ATTGTCGACACA
>PA0797(prpR) Score=5.8 Pos=-96 [Pseudomonas aeruginosa PAO1]
ATTGTCGACAAT
# TF - HutC: PA5105
>PA5106(hutF) Score=5.4 Pos=-43 [Pseudomonas aeruginosa PAO1]
GTATATGTATATACAAATAA
>PA5100(hutU) Score=5.9 Pos=-121 [Pseudomonas aeruginosa PAO1]
ATACTTGTATGTACAAGCAT
>PA5105(hutC) Score=5.4 Pos=-77 [Pseudomonas aeruginosa PAO1]
TTATTTGTATATACATATAC
# TF - HypR: PA1269
>PA1254(hypD) Score=3.7 Pos=-32 [Pseudomonas aeruginosa PAO1]
TTCGTATACGAA
>PA1260(hypM) Score=3.8 Pos=-67 [Pseudomonas aeruginosa PAO1]
ATCGTATACGAA
>PA1269(hypR) Score=4.5 Pos=-61 [Pseudomonas aeruginosa PAO1]
TTCGTATACAAT
# TF - IscR: PA3815
>PA0665(erpA) Score=6.4 Pos=-81 [Pseudomonas aeruginosa PAO1]
TTAGTTGACCATTTTTCTGGGACAA
>PA3815(iscR) Score=7.1 Pos=-71 [Pseudomonas aeruginosa PAO1]
ATAGTTGACCTAATTACTCGGATAA
# TF - NagQ: PA3757
>PA3757(nagQ) Score=5.3 Pos=-82 [Pseudomonas aeruginosa PAO1]
TGGCATTGACGTGGTATT
>PA3757(nagQ) Score=5.5 Pos=-71 [Pseudomonas aeruginosa PAO1]
TGGTATTCAAGTGGTATT
# TF - GlcC: PA5356
>PA5356(glcC) Score=6.2 Pos=-31 [Pseudomonas aeruginosa PAO1]
AACTGGTCCTACCAGCG
>PA5355(glcD) Score=5.2 Pos=-103 [Pseudomonas aeruginosa PAO1]
TACTGGTAGGACCAGTT
>PA5355(glcD) Score=4.6 Pos=-190 [Pseudomonas aeruginosa PAO1]
CGCTGGTAGGACCAGTT
>PA5356(glcC) Score=6.4 Pos=-118 [Pseudomonas aeruginosa PAO1]
AACTGGTCCTACCAGTA
# TF - NtrC: PA5125
>PA1730(ybdK) Score=4.5 Pos=-118 [Pseudomonas aeruginosa PAO1]
TGCACCAGACTGGGGCG
>PA5124(ntrB) Score=5.4 Pos=-182 [Pseudomonas aeruginosa PAO1]
CGCACCAGATTGGTGCG
>PA5288(glnK) Score=5.2 Pos=-338 [Pseudomonas aeruginosa PAO1]
TGCGCCTATTTGGTGCG
>PA5119(glnA) Score=5.3 Pos=-207 [Pseudomonas aeruginosa PAO1]
AGCACCATAACGGTGCA
>PA5119(glnA) Score=5.1 Pos=-220 [Pseudomonas aeruginosa PAO1]
TGCACCAACATGGAGCA
# TF - FruR: PA3563
>PA3563(fruR) Score=5.3 Pos=-92 [Pseudomonas aeruginosa PAO1]
GCTGAATCGATTCACT
>PA3562(fruB) Score=4.9 Pos=-251 [Pseudomonas aeruginosa PAO1]
AGTGAATCGATTCAGC
# TF - RbsR: PA1949
>PA1946(rbsB) Score=6.5 Pos=-76 [Pseudomonas aeruginosa PAO1]
TAACGCAAACGTTTGCGTCT
# TF - ModE: PA0487
>PA1863(modA) Score=5.8 Pos=-84 [Pseudomonas aeruginosa PAO1]
CGCTATATTCCAAAAGCCATAGCG
# TF - LexA: PA3007
>PA1865(PF08774) Score=5.2 Pos=-5 [Pseudomonas aeruginosa PAO1]
TCTGTATGCATGAACAGT
>PA4763(recN) Score=5.9 Pos=-41 [Pseudomonas aeruginosa PAO1]
ACTGTATAAATAACCAGA
>PA3007(lexA) Score=5.5 Pos=-45 [Pseudomonas aeruginosa PAO1]
ACTGTATATAATCCCAGT
>PA3007(lexA) Score=5.4 Pos=-26 [Pseudomonas aeruginosa PAO1]
ACTGGATAAAAACACAGA
>PA0671(imuA) Score=5.6 Pos=-153 [Pseudomonas aeruginosa PAO1]
ACTGTATTTACATACAGT
>PA3413(PF07130) Score=5.5 Pos=-57 [Pseudomonas aeruginosa PAO1]
ACTGTATGGATAACCAGT
>PA2288(PA2288) Score=5.7 Pos=-58 [Pseudomonas aeruginosa PAO1]
ACTGTATGAATGTACAGT
>PA3413(yebG) Score=5.5 Pos=-57 [Pseudomonas aeruginosa PAO1]
ACTGTATGGATAACCAGT
>PA0922(PA0922) Score=5.4 Pos=-69 [Pseudomonas aeruginosa PAO1]
ACTGTATATTCGTACAGC
>PA3617(recA) Score=5.6 Pos=-60 [Pseudomonas aeruginosa PAO1]
ACTGTCTACTTATACAGT
>PA0069(PF04055) Score=5.6 Pos=-37 [Pseudomonas aeruginosa PAO1]
ACTGTATCCATATACAGT
>PA1045(dinG) Score=5.2 Pos=-70 [Pseudomonas aeruginosa PAO1]
ACTGAAAATTTATCCAGC
# TF - LiuR: PA2016
>PA2557(aacS) Score=6.5 Pos=-127 [Pseudomonas aeruginosa PAO1]
CTTTACGTTAACGTAAAC
>PA2557(aacS) Score=5.5 Pos=-133 [Pseudomonas aeruginosa PAO1]
GTTTACCTTTACGTTAAC
>PA2016(liuR) Score=5.5 Pos=-34 [Pseudomonas aeruginosa PAO1]
GTTAACGTAAAGGTAAAC
>PA2016(liuR) Score=6.5 Pos=-40 [Pseudomonas aeruginosa PAO1]
CTTTACGTTAACGTAAAG
# TF - PsrA: PA3006
>PA3006(psrA) Score=5 Pos=-45 [Pseudomonas aeruginosa PAO1]
GCTGAAACGTATGTTTCAAA
>PA3006(psrA) Score=5.8 Pos=-32 [Pseudomonas aeruginosa PAO1]
TTTCAAACAAGTGTTTGTCA
>PA0506(acdH1) Score=5.5 Pos=-139 [Pseudomonas aeruginosa PAO1]
TTTCAAACGCCTGTTTGAGA
>PA1831 Score=5.7 Pos=-84 [Pseudomonas aeruginosa PAO1]
ATTCAAACAAGCGTATGTTT
>PA3014(fadB) Score=5.5 Pos=-180 [Pseudomonas aeruginosa PAO1]
AGTCAAACGGGCGTATGAAT
>PA2953(etfD) Score=5.9 Pos=-122 [Pseudomonas aeruginosa PAO1]
ATTCAAACAAACGTTTGTAT
>PA3622(rpoS) Score=4.8 Pos=-427 [Pseudomonas aeruginosa PAO1]
CCTCAAACGGAAGTTTGAAT
>PA5255(algQ) Score=5.5 Pos=-196 [Pseudomonas aeruginosa PAO1]
GATCAAACATCCGTATGAAT
>PA2952(etfB) Score=5.6 Pos=-218 [Pseudomonas aeruginosa PAO1]
ATACAAACGTTTGTTTGAAT
# TF - RutR: PA0167
>PA1517(COG0726) Score=6 Pos=-157 [Pseudomonas aeruginosa PAO1]
AACTGACCAGTCGGGCAGGT
>PA0166(pbuT) Score=5.3 Pos=-77 [Pseudomonas aeruginosa PAO1]
AGCTGATCACCTGGACAGCT
>PA0165(tsx) Score=5.8 Pos=-62 [Pseudomonas aeruginosa PAO1]
GCCTGACCGCTCGGACAGGT
>PA0136(ppuA) Score=5.4 Pos=-65 [Pseudomonas aeruginosa PAO1]
TCCTGACCTCCTGGCCAGGT
# TF - VanR: PA4906
>PA4904(vanA) Score=3.5 Pos=-13 [Pseudomonas aeruginosa PAO1]
AGAGGATCCGAC
>PA4904(vanA) Score=5.4 Pos=-222 [Pseudomonas aeruginosa PAO1]
ATTGGATCCATT
>PA4904(vanA) Score=5.5 Pos=-38 [Pseudomonas aeruginosa PAO1]
ATTGGATCCAAT
>PA4903(vanK) Score=5.4 Pos=-168 [Pseudomonas aeruginosa PAO1]
AATGGATCCAAT
# TF - PhnF: PA3381
>PA3381(phnF) Score=5.2 Pos=24 [Pseudomonas aeruginosa PAO1]
TTGTCTAGACAA
# TF - PhnR: PA2802, PA3249, PA1142
>PA2802(phnR3) Score=4.8 Pos=-114 [Pseudomonas aeruginosa PAO1]
TGGTCTAGGCCA
>PA3250(phnS) Score=5.3 Pos=-348 [Pseudomonas aeruginosa PAO1]
TGGTCTAGTCCA
>PA3249(phnR) Score=5.4 Pos=-27 [Pseudomonas aeruginosa PAO1]
TGGACTAGACCA
>PA3250(phnS) Score=5.4 Pos=-93 [Pseudomonas aeruginosa PAO1]
TGATCTAGACCA
>PA3249(phnR) Score=4.7 Pos=-282 [Pseudomonas aeruginosa PAO1]
TGGTCTAGATCA
>PA1144 Score=5.4 Pos=-263 [Pseudomonas aeruginosa PAO1]
TGGTCTAGACCA
>PA1144 Score=5.3 Pos=-84 [Pseudomonas aeruginosa PAO1]
TGGCCTAGACCA
>PA3255(COG0560) Score=4.7 Pos=-50 [Pseudomonas aeruginosa PAO1]
TGGACGAGACCA
>PA2803(phnX) Score=5.3 Pos=-31 [Pseudomonas aeruginosa PAO1]
TGGCCTAGACCA
# TF - FabR2: PA1539
>PA1538(COG2072) Score=5.5 Pos=-33 [Pseudomonas aeruginosa PAO1]
AGTATACAGATGTCTACA
>PA1539(fabR2) Score=5.5 Pos=-98 [Pseudomonas aeruginosa PAO1]
TGTAGACATCTGTATACT
# TF - RutR3: PA1504
>PA1524(xdhA) Score=5.4 Pos=-139 [Pseudomonas aeruginosa PAO1]
ATTTGACTCAAAAGTCAGTT
>PA1524(xdhA) Score=4.1 Pos=-163 [Pseudomonas aeruginosa PAO1]
GACTGACCTACAGGTCAAAA
>PA1519(pbuT) Score=5.8 Pos=-115 [Pseudomonas aeruginosa PAO1]
TCTTGACCCAGAGGTCAGAA
# RNA - yybP-ykoY
>PA2910(COG1971) Score=58.8 Pos=-176 [Pseudomonas aeruginosa PAO1]
GCCGGCCTTCCTTGGGGAGTAGCCTGCCGTCACCCGTTGACGGCGCGCTGGTCAACATTCTTGGCAACCTGCCATGGCCAGCGCATCCAACCGGATTGGTGAGACCAACGACATTCCT
>PA4629(COG2119) Score=24 Pos=-213 [Pseudomonas aeruginosa PAO1]
GCCCCGTCCTAGGGGAGTAGTCTCCCGCGAGCGCCGCACCGGCCTCGCCCGGCACGCGTCAACACACTTGGTCCGCAGACCATGGCGCGCGCGACCCAAGCCTGCCCAGACAGGCCAAGGGTTTGACAAGACCTATGACACGCACGA
# RNA - TPP
>PA4973(thiC) Score=62.5 Pos=-227 [Pseudomonas aeruginosa PAO1]
GGGGTTCTTGTCGGGGTGCCCTATACGAGGGGCTGAGATCGGATAGTTCCGGATCCCGTTGAACCTGATCGGGCTAGCGTCCGGTTCCGCCTCGCGCGGACCGCAGCAACCCGCGTAGGGAACAAGATGTCCGCGCCA
# RNA - SAH_riboswitch
>PA0432(ahcY) Score=38 Pos=-128 [Pseudomonas aeruginosa PAO1]
CCGTTCGAGGGGCGCTGCAGCAGGCCTAGGCCTGTCAGGCTCGAACGGA
# RNA - mini-ykkC
>PA3265(ykkC1) Score=31.3 Pos=-80 [Pseudomonas aeruginosa PAO1]
AGTGAGGACGACCTCACCACCCGCCTCCGGCCGGTGATCGAATGGGGACGGCCCCGCC
>PA1882(ykkC2) Score=42.5 Pos=-62 [Pseudomonas aeruginosa PAO1]
AAGCGGGACGACCCGTTTTCCCTCTTTCATTGCGCGGGGACGACCCTGCA
# RNA - S15
>PA4741(rpsO) Score=50.4 Pos=-65 [Pseudomonas aeruginosa PAO1]
CGGTCATTCCTCCTTTTAAAACACGGGAAGCGATTCCCGGCCTGTTCACTCAGAGGAAGCCCATCATGGCACTGAGCGTTGAAGAAAAAGCGCAGATCGTTAACGAATACAAGCAAGCTGAA
# RNA - Cobalamin
>PA2946(cbtA) Score=77.8 Pos=-58 [Pseudomonas aeruginosa PAO1]
CTAGGCGGGTTGTCCCAGGTGTCTCGTGCCGGCGCGCACGAGGTGAAACGGGAAGCCGGTGACGCTCTCCGAGCCAGTCCGGCGCTGCCCCCGCAACGGTAAGCGCATCGCGCGCGAGCCCGGAGACCGGCCTGGAACCTTTCGTTTGATTC
>PA2906(cobG) Score=87.8 Pos=-252 [Pseudomonas aeruginosa PAO1]
GCATAATAGCGCGTTCGTCGGTGCCCGGCCCTTTCGCGTTAGCGCGGGGCCAACGAGGGCCGAAGAGGGAACACGGAGCCGCGGTCTTTTCGAAGCCCGGGCCTAGCCGTGGCTGCCCCCGCAACTGTATGCAGCCTGTATTCGCGCCATTCGCCACTGGATTACCGGGAAGGCGGCGCGAAGCGGAGGTTCCTCCCCCGGGTGGAACGCCGGGCTGCGAGCCAGGAGACCTGCCGCCGAAACCAGTCGCGAG
>PA2911(btuB) Score=112.9 Pos=-303 [Pseudomonas aeruginosa PAO1]
CCATCCGGCCCGTTCCAGGTGCCTCCTGCCGCCGCGCAGGAGGTGAAACGGGAAGCCGGTGCGTCACTTCGGTGATCAGTCCGGCGCTGCCCCCGCAACGGTAAGCGAGCGAAATCCTCTTCAGGCCACTGTGCTCCGGCATGGGAAGGCGAGGATTTCACGACCCTCGCAAGCCCGGAGACCGGCCTGCAACGCCCTGTTGGCACA
>PA2945 Score=104.6 Pos=-238 [Pseudomonas aeruginosa PAO1]
CGTAGCCTTGCCGGTTCGAGGTTCCTCGCCGGCGACGGCGGGGCTAAGAGGGAACGCGGTCGATGCCGCGGCTGCCCCCGCAACTGTGAACGGCGATCGTTCCCCAATGCCACTGCGTGACGCGGGAAGGCGGGGAACCGGCGGAGACGCCAGACCGTGAGCCAGGAGACCTGCCTCGTCGATCCCGTGGCGC
>PA1271(btuB2) Score=82.3 Pos=-303 [Pseudomonas aeruginosa PAO1]
CTGCGCGCCTTGCGACAGGTGCCCCGCAAGGGGTGAAACAGGGAAGCTGGTGCGTTCCGTCGGAACCAGGCCAGCGCTGCCCCCGCAACGGTAGGCGAATCAGACAGCCGCTCGATGACCACTGTGCTCCGGCATGGGAAGGCGCGGCTGGAAGCGTCCAGCGCTTCGCTCGCGAGCCCGGAGACCGGCCTGACGCACCCACGGCATCGC
# RNA - FMN
>PA4055(ribE2) Score=95.3 Pos=-347 [Pseudomonas aeruginosa PAO1]
GTAACGTTCTCAGGGCGGGGTGAAAGTCCCCACCGGCGGTAATGGCGCGCAAGGCGCCTAGCCCGCGAGCGCTTGCCGGACCGGCCACCGCCGGACGACAAGGTCAGCAGACCCGGTGCGATTCCGGGGCCGACGGTCATAGTCCGGATAAAGAGAGAACGGGA
# TF - PA2100: PA2100
>PA2101(COG697 (RhaT)) Score=13.1 Pos=-167 [Pseudomonas aeruginosa PAO1]
ATTGAATC-(1)-GTGTCAAT-(6)-TTTGACCG
# TF - GntR: PA2320
>PA2321(gntK) Score=6 Pos=-34 [Pseudomonas aeruginosa PAO1]
CAAAGATAGCGCTGTCTCAC
>PA2321(gntK) Score=5.9 Pos=-162 [Pseudomonas aeruginosa PAO1]
CTAAGGTAGCGCTGTCTCGC
>PA2320(gntR) Score=5.9 Pos=-52 [Pseudomonas aeruginosa PAO1]
GCGAGACAGCGCTACCTTAG
>PA2322(gntT) Score=5.5 Pos=-78 [Pseudomonas aeruginosa PAO1]
CAAAGATAGCGCTACCCCGA
>PA2320(gntR) Score=6 Pos=-180 [Pseudomonas aeruginosa PAO1]
GTGAGACAGCGCTATCTTTG
# TF - SoxR: PA2273
>PA2274(PF03992) Score=6.4 Pos=-67 [Pseudomonas aeruginosa PAO1]
ACCTCAAGTTTGCTTGAGGT
>PA4205(mexG) Score=6.9 Pos=-125 [Pseudomonas aeruginosa PAO1]
ACCTCAACTTAACTTGAGGT
>PA3718(PF07690) Score=6.7 Pos=-83 [Pseudomonas aeruginosa PAO1]
ACCTCAAGTTAACTTGAGCT
>PA2273(soxR) Score=6.4 Pos=-30 [Pseudomonas aeruginosa PAO1]
ACCTCAAGCAAACTTGAGGT
# TF - CueR: PA4778
>PA3523 Score=5.1 Pos=-89 [Pseudomonas aeruginosa PAO1]
ACCTTGCCAAGGTGTCAAGGT
>PA3920(copA) Score=4.9 Pos=-97 [Pseudomonas aeruginosa PAO1]
ACCTTGACACGATGTCAAGGC
# TF - CadR-PbrR: PA3689
>PA3690(cadA) Score=6.4 Pos=-60 [Pseudomonas aeruginosa PAO1]
ACTCTGTAGTTGCTACAGGGT
# TF - PtxS: PA2259
>PA2259(ptxS) Score=6.5 Pos=-87 [Pseudomonas aeruginosa PAO1]
TTCTGAAACCGGTTTCAACT
>PA2260(kguE) Score=6.5 Pos=-28 [Pseudomonas aeruginosa PAO1]
AAATGAAACCGGTTTCAGAG
# TF - PA2299: PA2299
>PA2299(PA2299) Score=6.4 Pos=-47 [Pseudomonas aeruginosa PAO1]
ACTTGTTATAACAAGT
# TF - PA1520: PA1520
>PA2938(PA2938) Score=3.9 Pos=-117 [Pseudomonas aeruginosa PAO1]
TTGTCTACAG
>PA2938(PA2938) Score=4 Pos=-151 [Pseudomonas aeruginosa PAO1]
TTGTATACAT
>PA0476(PA0476) Score=4.7 Pos=-68 [Pseudomonas aeruginosa PAO1]
TTGTATACAA
>PA1519(PA1519) Score=4.3 Pos=-283 [Pseudomonas aeruginosa PAO1]
GTGTACACAA
>PA1519(PA1519) Score=4.7 Pos=-147 [Pseudomonas aeruginosa PAO1]
TTGTATACAA
>PA1518(PA1518) Score=4.7 Pos=-307 [Pseudomonas aeruginosa PAO1]
TTGTATACAA
>PA0476(PA0476) Score=4.8 Pos=-295 [Pseudomonas aeruginosa PAO1]
TTGTGCACAA
>PA0165(PA0165) Score=4.8 Pos=-340 [Pseudomonas aeruginosa PAO1]
TTGTGTACAA
>PA1518(PA1518) Score=4.7 Pos=-125 [Pseudomonas aeruginosa PAO1]
TTGTATACAA
>PA1520(PA1520) Score=4.7 Pos=-237 [Pseudomonas aeruginosa PAO1]
TTGTATACAA
>PA1520(PA1520) Score=4.3 Pos=-101 [Pseudomonas aeruginosa PAO1]
TTGTGTACAC
>PA1502(gcl) Score=4 Pos=-259 [Pseudomonas aeruginosa PAO1]
TTGTACCCAA
>PA1502(gcl) Score=4 Pos=-193 [Pseudomonas aeruginosa PAO1]
TTGTATACAT
>PA1502(gcl) Score=4.8 Pos=-36 [Pseudomonas aeruginosa PAO1]
TTGTACACAA
>PA1503(PA1503) Score=4.8 Pos=-302 [Pseudomonas aeruginosa PAO1]
TTGTGTACAA
>PA1503(PA1503) Score=4 Pos=-145 [Pseudomonas aeruginosa PAO1]
ATGTATACAA
>PA1503(PA1503) Score=4 Pos=-79 [Pseudomonas aeruginosa PAO1]
TTGGGTACAA
>PA1517(PA1517) Score=4.7 Pos=-257 [Pseudomonas aeruginosa PAO1]
TTGTATACAA
>PA1507(PA1507) Score=4.7 Pos=-170 [Pseudomonas aeruginosa PAO1]
TTGTATACAA
>PA1517(PA1517) Score=4.7 Pos=-75 [Pseudomonas aeruginosa PAO1]
TTGTATACAA
# TF - UreR: PA0120
>PA0119(dctA) Score=5.7 Pos=-74 [Pseudomonas aeruginosa PAO1]
ACTGGTCAGACCGGT
>PA0119(dctA) Score=4.6 Pos=-65 [Pseudomonas aeruginosa PAO1]
ACCGGTAATACCACA
# TF - MetR: PA3587
>PA1843(metH) Score=5 Pos=-258 [Pseudomonas aeruginosa PAO1]
AATGAGCCAGACTCATT
>PA1843(metH) Score=5 Pos=-95 [Pseudomonas aeruginosa PAO1]
CTTGAATGAAATTCATG
>PA1927(metE) Score=5.3 Pos=-69 [Pseudomonas aeruginosa PAO1]
ATTGAGTTTGTCTCATG
>PA3587(metR) Score=4.9 Pos=-59 [Pseudomonas aeruginosa PAO1]
TATGAGACAAACTCAAC
# TF - PA0268: PA0268
>PA0269(PF02627) Score=14.4 Pos=-120 [Pseudomonas aeruginosa PAO1]
ATTGGCTAC-(15)-ATTGGCTCT-(5)-GAAGCCAAA
# TF - YdcR: PA4132
>PA4130(cysI) Score=7.9 Pos=-183 [Pseudomonas aeruginosa PAO1]
ATCTGATGTGTTTTT---------ATCTGCCGCTGTTTC
>PA4133(ccoN) Score=7.2 Pos=-137 [Pseudomonas aeruginosa PAO1]
ATCTGATACCCAAAT---------ACCTGAAGCTGTTTT
# TF - GcvR: PA2449
>PA2446(gcvH) Score=4.4 Pos=-264 [Pseudomonas aeruginosa PAO1]
CTGTAACGCTTCGGTTACGA
>PA2446(gcvH) Score=5.4 Pos=-163 [Pseudomonas aeruginosa PAO1]
CTGTAACGAAAGCGTTCCAT
>PA2446(gcvH) Score=5.6 Pos=-244 [Pseudomonas aeruginosa PAO1]
GTGGAACGAATTCGTTCCGA
# TF - HmgR: PA2010
>PA2010(hmgR) Score=6.2 Pos=-86 [Pseudomonas aeruginosa PAO1]
ATCGTAATTCAATTACGCA
>PA2009(hmgA) Score=6.2 Pos=-93 [Pseudomonas aeruginosa PAO1]
TGCGTAATTGAATTACGAT
# TF - PdxR: PA4165
>PA4166(PF00583) Score=13 Pos=-133 [Pseudomonas aeruginosa PAO1]
AAATGGTCTG-(13)-AATTGGTGGG-(6)-CAAGCCATTA
# TF - YjiR: PA2032
>PA2031(yjiS) Score=16.2 Pos=-144 [Pseudomonas aeruginosa PAO1]
TACAGAT-(17)-TTCAGGC-(13)-ATCTGTA-(23)-ACCTGTA
# TF - EutR: PA5506
>PA5506(eutR) Score=5 Pos=-83 [Pseudomonas aeruginosa PAO1]
AATGTAGTGAAAAAAACATT
# TF - SdaR: PA1050
>PA1051(grtP) Score=5.6 Pos=-141 [Pseudomonas aeruginosa PAO1]
CACTGTGCAGTCGCACAAAA
# TF - PhrR: PA4659
>PA4657(COG3380) Score=5.9 Pos=-73 [Pseudomonas aeruginosa PAO1]
TGTACATTAAATCAAGCTTGTACA
>PA4658(COG3272) Score=5.9 Pos=-106 [Pseudomonas aeruginosa PAO1]
TATACAAATACATTGACCTGTACA
# TF - PdxW2: PA5431
>PA5432(COG456 (RimI), PF00583) Score=14 Pos=-94 [Pseudomonas aeruginosa PAO1]
ATTGGACCT-(15)-AATGGATCT-(5)-CGGACCATT