# TF - NrdR: Daro_0604
>Daro_0964(nrdJa) Score=4.8 Pos=-75 [Dechloromonas aromatica RCB]
GCACTATATCTAGTAG
# TF - NikR: Daro_3947
>Daro_3945(hoxN) Score=7.4 Pos=-35 [Dechloromonas aromatica RCB]
GTATGAA-------------TTCATAC
# TF - LldR: Daro_1767
>Daro_1766(lldE) Score=6 Pos=-47 [Dechloromonas aromatica RCB]
TATTGGTCTTACCAATT
>Daro_1766(lldE) Score=4 Pos=-160 [Dechloromonas aromatica RCB]
GATTGGTAAGACCAGCA
>Daro_1766(lldE) Score=4.2 Pos=-178 [Dechloromonas aromatica RCB]
CATTGGTAAGACCACAT
>Daro_1767(lldR) Score=4.8 Pos=-32 [Dechloromonas aromatica RCB]
TGCTGGTCTTACCAATC
>Daro_1767(lldR) Score=5.5 Pos=-145 [Dechloromonas aromatica RCB]
AATTGGTAAGACCAATA
>Daro_1767(lldR) Score=4.5 Pos=-14 [Dechloromonas aromatica RCB]
ATGTGGTCTTACCAATG
# TF - IscR: Daro_1948
>Daro_1948(iscR) Score=6.3 Pos=-69 [Dechloromonas aromatica RCB]
ATAGTTGACTAATTTTCTCTGGTTT
>Daro_1948(iscR) Score=5.5 Pos=-40 [Dechloromonas aromatica RCB]
ATAGTTGACCTTAATACTAGGTTAT
>Daro_1948(iscR) Score=5.2 Pos=-82 [Dechloromonas aromatica RCB]
ATACCTGAGCAAAATAGTTGACTAA
>Daro_1947(cysE) Score=6.1 Pos=-64 [Dechloromonas aromatica RCB]
ATAGCTGACAAATTCAGTCGAGTAT
# TF - NtrC: Daro_3758
>Daro_3763(glnA) Score=5.7 Pos=-214 [Dechloromonas aromatica RCB]
TGCACCAAAATAGTGCG
>Daro_0052(CHP02001) Score=5 Pos=-148 [Dechloromonas aromatica RCB]
CGCACAGTTTTGGTGCG
>Daro_3763(glnA) Score=5 Pos=-183 [Dechloromonas aromatica RCB]
TGCACGATCGTGGTGCA
>Daro_3703(amtB2) Score=4.9 Pos=-119 [Dechloromonas aromatica RCB]
TGCACCAAACAGGTGCT
>Daro_3703(amtB2) Score=4.8 Pos=-53 [Dechloromonas aromatica RCB]
TGCACTGGAATGGTGCT
>Daro_0816(nasD) Score=5.3 Pos=-199 [Dechloromonas aromatica RCB]
TGCACGAATTTGGTGCG
>Daro_3759(ntrB) Score=5.6 Pos=-204 [Dechloromonas aromatica RCB]
TGCACCAATACGGTGCG
# TF - ModE: Daro_1477
>Daro_1477(modE) Score=5.9 Pos=-149 [Dechloromonas aromatica RCB]
CGCTATATACAACCATATGTAGCG
>Daro_1477(modE) Score=5.7 Pos=-38 [Dechloromonas aromatica RCB]
CGTTATAGTGATTTGTATATAGAT
# TF - LexA: Daro_1939
>Daro_1939(lexA) Score=6.1 Pos=-44 [Dechloromonas aromatica RCB]
TACTGTACAAAAATACAGTC
>Daro_4152(recA) Score=5.8 Pos=-146 [Dechloromonas aromatica RCB]
TACTGTATTTATACACAGTA
>Daro_4062(ruvA) Score=5.7 Pos=-47 [Dechloromonas aromatica RCB]
AACTGTGTGAAAATACAGTA
>Daro_0473(uvrA) Score=6.2 Pos=-85 [Dechloromonas aromatica RCB]
TGCTGTATAAAAAAACAGCC
>Daro_2123(dinB) Score=6 Pos=-262 [Dechloromonas aromatica RCB]
GGCTGTATATTTATACAGCC
# TF - LiuR: Daro_0102
>Daro_0101(paaI) Score=5.4 Pos=-45 [Dechloromonas aromatica RCB]
GTTAACGTAAACGTAAAT
>Daro_0101(paaI) Score=6.5 Pos=-51 [Dechloromonas aromatica RCB]
GTTGACGTTAACGTAAAC
# TF - PsrA: Daro_1543
>Daro_1543(psrA) Score=6 Pos=-34 [Dechloromonas aromatica RCB]
ATTCAAACGAACGTATGAAT
>Daro_1548(fadL) Score=4.7 Pos=-122 [Dechloromonas aromatica RCB]
TTTCCAACAGTCATTTGAAT
>Daro_1548(fadL) Score=5.8 Pos=-83 [Dechloromonas aromatica RCB]
TTTCAAACGTTTGTTTGAGA
>Daro_1549(acdB) Score=6 Pos=-58 [Dechloromonas aromatica RCB]
ATTCAAACGTTCGTTTTATT
# RNA - TPP
>Daro_3921(thiC) Score=64.5 Pos=-151 [Dechloromonas aromatica RCB]
GCCCACTCGTTAGGGGTGCCAACCGCAAAACTTGGCTGAGAATTACCCTTCGAACCTGACCGGGTCATGCCGTCGTAGGGAAACGAACTCTGTCGTTG
# TF - HrcA: Daro_0930
>Daro_0425(groS) Score=7.4 Pos=-115 [Dechloromonas aromatica RCB]
TTAGCACTCACCGGCGACGAGTGCTAA
>Daro_3837(rpoH) Score=7.1 Pos=-61 [Dechloromonas aromatica RCB]
TTAGCACTCTTATGCAGCGAGTGCTAA
# TF - CadR-PbrR: Daro_2256, Daro_2633
>Daro_2631(cadA) Score=5.6 Pos=-49 [Dechloromonas aromatica RCB]
ACTCTGTAGCCACTCAAGGGT
>Daro_2257(cadA) Score=6.5 Pos=-58 [Dechloromonas aromatica RCB]
ACCCTATAGTAGCTACAGGGT
# RNA - SAH_riboswitch
>Daro_0046(metH) Score=60.1 Pos=-152 [Dechloromonas aromatica RCB]
TTCTGCCGAGGAGCGCTGCGACCCTTTAATTCGGGGGCCAGGCTCGGCAATGATCAACGGCGCTCGCAAACC
>Daro_0186(ahcY) Score=45.7 Pos=-144 [Dechloromonas aromatica RCB]
ACCTACCGAGGGGCGCTGCAGGAGATTCCTCCCAGGCTCGGTTTAAAACGGCGCTCACTGATC
# TF - YdcR: Daro_1063
>Daro_1066(COG0348) Score=9.4 Pos=-96 [Dechloromonas aromatica RCB]
ATCTGTTCCTATAAG---------ATCTGAAACTGTTTC
>Daro_1065(COG1845) Score=7.7 Pos=-94 [Dechloromonas aromatica RCB]
ATCTGTGCCTATCGA---------TTCTGTTTCTGTGCA
>Daro_1065(COG1845) Score=7.3 Pos=-69 [Dechloromonas aromatica RCB]
TTCTGTTTCTGTGCA---------AACTGAAACAATACG
>Daro_0445(COG1845) Score=6.2 Pos=-103 [Dechloromonas aromatica RCB]
ATCTTTTTGTTTCGT---------ACCTGATCCGTTGAT
# TF - Daro_1932: Daro_1932
>Daro_1931 Score=18.9 Pos=-118 [Dechloromonas aromatica RCB]
ACCAGTACAGATGA-(11)-ACCGGCACAGTTTT-(8)-AATACTGTACCGAT-(11)-TTCATTGTGACTGT
# TF - MlnR: Daro_4007
>Daro_4011(Daro_4011) Score=4.7 Pos=-26 [Dechloromonas aromatica RCB]
TAATTATTAATTAGGGAGGA
>Daro_4006(mutB) Score=5.6 Pos=-121 [Dechloromonas aromatica RCB]
GCTTCCATAATTATGGATAC
>Daro_4007(mlnR) Score=5.6 Pos=-29 [Dechloromonas aromatica RCB]
GTATCCATAATTATGGAAGC
>Daro_4012(ebA3691) Score=4.3 Pos=-113 [Dechloromonas aromatica RCB]
TAATTAATAATTACCGTAAA
>Daro_1202(ebA7223) Score=6 Pos=-49 [Dechloromonas aromatica RCB]
TCATTCGTAATTATGAATAC
>Daro_4012(ebA3691) Score=4.7 Pos=-120 [Dechloromonas aromatica RCB]
TCCTCCCTAATTAATAATTA
>Daro_0300(epi) Score=4.8 Pos=-50 [Dechloromonas aromatica RCB]
ATCCCTATAATTATGGATTA
>Daro_4011(Daro_4011) Score=4.3 Pos=-33 [Dechloromonas aromatica RCB]
TTTACGGTAATTATTAATTA
# TF - MdcY: Daro_4024
>Daro_4024(mdcY) Score=5 Pos=-49 [Dechloromonas aromatica RCB]
GTGTATACAA
>Daro_4024(mdcY) Score=4.1 Pos=-70 [Dechloromonas aromatica RCB]
TTGTATTCAT
>Daro_4023(matP) Score=4.1 Pos=-104 [Dechloromonas aromatica RCB]
ATGAATACAA
>Daro_4023(matP) Score=5 Pos=-125 [Dechloromonas aromatica RCB]
TTGTATACAC
# TF - SdhR: Daro_2866
>Daro_4011(PF04341) Score=6.3 Pos=-71 [Dechloromonas aromatica RCB]
TGCCATGTCTTCTATAAGATATAATA
>Daro_3098(aceA) Score=6.4 Pos=-127 [Dechloromonas aromatica RCB]
TCTTATGTCTTATATAAGACTATTGC
>Daro_2866(sdhR) Score=7 Pos=-66 [Dechloromonas aromatica RCB]
TCATATGTCTTATATAAGACAACTTT
>Daro_2867(mdh) Score=7 Pos=-160 [Dechloromonas aromatica RCB]
AAAGTTGTCTTATATAAGACATATGA
>Daro_4012(COG1024) Score=6.3 Pos=-81 [Dechloromonas aromatica RCB]
TATTATATCTTATAGAAGACATGGCA