# TF - LiuR: Reut_A0133
>Reut_A0589(paaH) Score=6.6 Pos=-56 [Ralstonia eutropha JMP134]
GTTGACGTTTACGTAAAC
>Reut_A0589(paaH) Score=4.5 Pos=-50 [Ralstonia eutropha JMP134]
GTTTACGTAAACGGCAGT
>Reut_A0132 Score=5.5 Pos=-149 [Ralstonia eutropha JMP134]
GTTTACGTTAGCGTCAAC
>Reut_A0132 Score=6.2 Pos=-155 [Ralstonia eutropha JMP134]
GTTGACGTTTACGTTAGC
>Reut_A0133(liuR) Score=6.4 Pos=-99 [Ralstonia eutropha JMP134]
GTTGACGCTAACGTAAAC
>Reut_A0133(liuR) Score=5.1 Pos=-93 [Ralstonia eutropha JMP134]
GCTAACGTAAACGTCAAC
>Reut_A0134(paaI) Score=5.3 Pos=-52 [Ralstonia eutropha JMP134]
GTTTACGTAAACGTCAAT
>Reut_A0134(paaI) Score=6.6 Pos=-58 [Ralstonia eutropha JMP134]
ATTGACGTTTACGTAAAC
# TF - NrdR: Reut_A0789
>Reut_A2941(nrdA) Score=4.9 Pos=-239 [Ralstonia eutropha JMP134]
CCACTATATCTAGTAG
# TF - NorR: Reut_B5057
>Reut_B5057(norR) Score=4.8 Pos=-29 [Ralstonia eutropha JMP134]
CGCGGTGTAATTTACCCGT
>Reut_B5057(norR) Score=4.6 Pos=-55 [Ralstonia eutropha JMP134]
AACGGTATAATTCACCCAC
>Reut_B5056(norA) Score=4.6 Pos=-106 [Ralstonia eutropha JMP134]
GTGGGTGAATTATACCGTT
>Reut_B5056(norA) Score=4.8 Pos=-132 [Ralstonia eutropha JMP134]
ACGGGTAAATTACACCGCG
>Reut_B5056(norA) Score=5.1 Pos=-151 [Ralstonia eutropha JMP134]
TAGGGTCATAAATACCTTA
# TF - PsrA: Reut_A3446
>Reut_A2265(fabH) Score=2.5 Pos=-198 [Ralstonia eutropha JMP134]
GATCAAACGCGGGTATGATG
>Reut_A3446(psrA) Score=3.6 Pos=-120 [Ralstonia eutropha JMP134]
ATTAGAGCAGGCATTCGAAT
# TF - FadP: Reut_A0445
>Reut_A0445(fadP) Score=4.9 Pos=-140 [Ralstonia eutropha JMP134]
CTGAACGACCGTTCTT
>Reut_A2550(etfB) Score=5.5 Pos=-97 [Ralstonia eutropha JMP134]
TAGTACGATCGTTCGA
>Reut_A1262(etfD) Score=5.1 Pos=-211 [Ralstonia eutropha JMP134]
AAGAACGACCGTTCCA
>Reut_A0823(fadD2) Score=5.4 Pos=-73 [Ralstonia eutropha JMP134]
TAGAACGATCGTTCGG
>Reut_A1419(RSc1772) Score=5.2 Pos=12 [Ralstonia eutropha JMP134]
TCGAACGACCGTTCAC
>Reut_A1405(fadB) Score=5.5 Pos=-203 [Ralstonia eutropha JMP134]
TTGAACGACCGTGCTA
>Reut_A1097(acsA) Score=5.4 Pos=-49 [Ralstonia eutropha JMP134]
TAGAACGACCGTTCGC
>Reut_A0268(nppD) Score=5.2 Pos=-58 [Ralstonia eutropha JMP134]
TCGAACGACCGTTCAT
>Reut_A0133(liuR) Score=4.9 Pos=-32 [Ralstonia eutropha JMP134]
ACGAACGACCGTTCAC
>Reut_A0190(Rmet_0145) Score=5.6 Pos=-10 [Ralstonia eutropha JMP134]
TCGAACGACCGTGCTA
>Reut_A1010(paaH1) Score=4.9 Pos=-43 [Ralstonia eutropha JMP134]
ACGTACGATCGTGCTA
>Reut_A2994(fadD1) Score=4.7 Pos=-34 [Ralstonia eutropha JMP134]
TCGAACGACCATTCAG
>Reut_A0977(RSc2046) Score=5.2 Pos=-64 [Ralstonia eutropha JMP134]
TAGCACGACCGTTCAC
>Reut_A1353(bktB) Score=5.1 Pos=-71 [Ralstonia eutropha JMP134]
AAGTACGATCGTTCGA
>Reut_A1398(alkK) Score=4.7 Pos=-54 [Ralstonia eutropha JMP134]
TAGAACGGTTGTTCGT
# TF - LexA: Reut_A2008
>Reut_B4525(imuA) Score=6.3 Pos=91 [Ralstonia eutropha JMP134]
TACTGTATAAATATACAGTT
>Reut_A0527(recA) Score=6.1 Pos=-194 [Ralstonia eutropha JMP134]
TACTGTTTTTTTATACAGTA
>Reut_A2008(lexA) Score=6 Pos=-74 [Ralstonia eutropha JMP134]
TACTGTTTAAACATACAGTG
>Reut_A2008(lexA) Score=5 Pos=-95 [Ralstonia eutropha JMP134]
TACTGTATAAAATCACAGGC
>Reut_A0283(uvrD) Score=5.7 Pos=-6 [Ralstonia eutropha JMP134]
GCCTGTATGGATATACAGTT
>Reut_A1285(H16_A1352) Score=5.9 Pos=125 [Ralstonia eutropha JMP134]
TACTGTACATCCATACAGTA
>Reut_B5827(PF06733) Score=6.1 Pos=-44 [Ralstonia eutropha JMP134]
GACTGTATATTCATACAGTT
>Reut_B3817(BPSS1334) Score=5.3 Pos=-31 [Ralstonia eutropha JMP134]
ACCTGTATGGATAAACAGTG
>Reut_B3817(BPSS1334) Score=6.4 Pos=-50 [Ralstonia eutropha JMP134]
TACTGTATATATTTACAGTA
>Reut_B4240(uvrA) Score=5.6 Pos=-160 [Ralstonia eutropha JMP134]
CACTGTACGGATATACAGTC
>Reut_B5317(H16_B2553) Score=6 Pos=-51 [Ralstonia eutropha JMP134]
GACTGTATATTCGTACAGTA
# TF - Fur: Reut_B5530, Reut_A2837
>Reut_B5430 Score=5.2 Pos=-80 [Ralstonia eutropha JMP134]
AATGAAAACGATTTTCATT
>Reut_A2235 Score=5.3 Pos=-187 [Ralstonia eutropha JMP134]
AATAAGAATCATTATCGTT
>Reut_B4660 Score=4.3 Pos=-81 [Ralstonia eutropha JMP134]
ACTGATAATGATTCCTGTT
>Reut_B4659 Score=4.7 Pos=-180 [Ralstonia eutropha JMP134]
ATTACGAATGATTCGTATT
>Reut_A0298 Score=5.2 Pos=-1 [Ralstonia eutropha JMP134]
AAtGggAATTgTTATCaTT
>Reut_A2878 Score=5 Pos=-51 [Ralstonia eutropha JMP134]
AATGATAATGCTTCGCATT
>Reut_A2571 Score=5.2 Pos=-90 [Ralstonia eutropha JMP134]
ATTGCGAATCATTATCATT
>Reut_A2238 Score=5.1 Pos=-107 [Ralstonia eutropha JMP134]
AATGGTAATGGTTCTCATT
>Reut_B3686 Score=4.6 Pos=-108 [Ralstonia eutropha JMP134]
CTTGATAATGATTCGCATT
>Reut_A2876 Score=4.4 Pos=-136 [Ralstonia eutropha JMP134]
AACGCAAATCATTCGCATT
>Reut_B4646 Score=4.8 Pos=-72 [Ralstonia eutropha JMP134]
AACAATAACCGTTATCATT
# TF - LiuQ: Reut_A1468
>Reut_A1467 Score=5 Pos=-167 [Ralstonia eutropha JMP134]
TTGACCAACACTCAA
>Reut_A1468 Score=5.3 Pos=-154 [Ralstonia eutropha JMP134]
TTGAGCGTAGCTCAA
>Reut_A1467 Score=5.3 Pos=-59 [Ralstonia eutropha JMP134]
TTGAGCTACGCTCAA
>Reut_A1468 Score=5 Pos=-46 [Ralstonia eutropha JMP134]
TTGAGTGTTGGTCAA
# TF - Zur: Reut_A0164
>Reut_A0161(yciC) Score=6.3 Pos=-66 [Ralstonia eutropha JMP134]
CAGTCGCAACTTTGTTGCAATAA
>Reut_A0876(zip) Score=6.3 Pos=-3 [Ralstonia eutropha JMP134]
TTGTTGCAACATTGTTGCGTTTG
# TF - ModE: Reut_A0630
>Reut_A0634(modA) Score=4.8 Pos=-82 [Ralstonia eutropha JMP134]
CTCGCTATATACAGCCTTATATTGCGCC
# TF - Dnr: Reut_B5062
>Reut_B5010 Score=5.2 Pos=-91 [Ralstonia eutropha JMP134]
CGTTGACAACAGTCAACC
# TF - HexR: Reut_A1080
>Reut_A1081(edd) Score=5.8 Pos=-203 [Ralstonia eutropha JMP134]
ATGTAGATATTCTACAA
>Reut_A1081(edd) Score=5.7 Pos=-62 [Ralstonia eutropha JMP134]
ATGTAGAAAATCTACAT
>Reut_A1080(hexR) Score=5.7 Pos=-166 [Ralstonia eutropha JMP134]
ATGTAGATTTTCTACAT
>Reut_A1080(hexR) Score=5.8 Pos=-25 [Ralstonia eutropha JMP134]
TTGTAGAATATCTACAT
# TF - IscR: Reut_A1057
>Reut_A1057(iscR) Score=6.8 Pos=-37 [Ralstonia eutropha JMP134]
ATACTTGACGGAAACGATCAAGTAT
>Reut_A1057(iscR) Score=6.9 Pos=-66 [Ralstonia eutropha JMP134]
GTAGTTGACTGAAATAGTCGGGTAC
# TF - SdhR: Reut_A2326
>Reut_A2756(icd) Score=5.8 Pos=-158 [Ralstonia eutropha JMP134]
TCTTGTGTCTTATATAAGACTGAAAG
>Reut_A2326(sdhR) Score=7.9 Pos=-77 [Ralstonia eutropha JMP134]
TCATATGTCTTATATAAGACATAAGA
>Reut_A1961(aceA) Score=5.4 Pos=-124 [Ralstonia eutropha JMP134]
CCTACACTCTTATATAAGACAAATGA
>Reut_A0384(aceA2) Score=6.5 Pos=-134 [Ralstonia eutropha JMP134]
TCTTATGTCTTATATAAGACTGACGC
>Reut_A2327(mdh) Score=7.9 Pos=-327 [Ralstonia eutropha JMP134]
TCTTATGTCTTATATAAGACATATGA
# RNA - FMN
>Reut_B4029(ribB) Score=100.1 Pos=-336 [Ralstonia eutropha JMP134]
TACGTCTTCAGGGCGGGGTGAAACTCCCCACCGGCGGTATGCCGCAGCGTGCGTTTCCGTACGATGCAGCGAGCCCGCGAGCGCCTGCACATGCCGTGCAGGGTCAGCAGACCTGGTGCGATGCCAGGGCCGACGGTCATAGTCCGGATGAAAGAAGATGGGCGG
# RNA - TPP
>Reut_A0205(thiC) Score=59.5 Pos=-202 [Ralstonia eutropha JMP134]
GGATGAAACAGGGGTGCCGTACGGATGGGCCGTGCGAGCTGAGAGAGTCCCTTCGAACCCGATCCGGTTAGTACCGGCGTGGGAAGTTTCTAGCAAGACCAAGT
# RNA - Cobalamin
>Reut_A0654(btuB) Score=47.7 Pos=-322 [Ralstonia eutropha JMP134]
CACTCGCGCACGTTCCAGGTGCTCGCCATCCGCCCAAGGCAGATTGGCAGTTCAACGGGAAACAGGGAGCCGCGGCCGACGAACAGCTCGGCCAGGCCAACCTGTGCTGCCCCCGCAACGGTAAGCGGCCGCGATGCCTGCCCACACGGCGTCGCAGGGCTGGCCAATCGCCACTGAACCTCACGCGTTCGGGAAGGCGGCCAGTCCCGAGCCGCCAGCCCGGATACCGGCCTGAACGCGGGCTGCCGCCCC
# TF - NsrR: Reut_A3220
>Reut_A3220(nsrR) Score=4.6 Pos=-39 [Ralstonia eutropha JMP134]
CTTGCATTTGAAATGCCGC
>Reut_A3219(hmp) Score=5.5 Pos=-41 [Ralstonia eutropha JMP134]
CATGCATTTTGTTTGCATG
# TF - LldR: Reut_B5449
>Reut_B5449(lldR) Score=5.9 Pos=-64 [Ralstonia eutropha JMP134]
AATTGGTTGGACCAATT
>Reut_B5448(lldE) Score=6.3 Pos=-85 [Ralstonia eutropha JMP134]
AATTGGTCCAACCAATT
# TF - NtrC: Reut_A2054
>Reut_B4859(narK) Score=4.2 Pos=-271 [Ralstonia eutropha JMP134]
CGCACCATGACTGTGCC
>Reut_A3006(dppA) Score=4.9 Pos=-93 [Ralstonia eutropha JMP134]
CGCACCAAAATGCAGCG
>Reut_B4038(amtB) Score=4.6 Pos=-91 [Ralstonia eutropha JMP134]
TCCACCATGAAGGTGCA
>Reut_A2057(glnA) Score=4.9 Pos=-319 [Ralstonia eutropha JMP134]
CGCACCGTTATGGTGTT
>Reut_A2056(ntrZ) Score=4.6 Pos=-80 [Ralstonia eutropha JMP134]
AGCACCATCAAGGGGCG
>Reut_B4038(amtB) Score=4.7 Pos=-232 [Ralstonia eutropha JMP134]
TGCACCACTAAGGTTCA
# RNA - Glycine
>Reut_A3329(gcvT) Score=47 Pos=-329 [Ralstonia eutropha JMP134]
GCATCCGACCGGGAGAGCGCGCACAGTCTTGCGCCGCCGAAGGGGTATCACCCGAAAACTCTCAGGCACCACGGACCGTTCGGATCGGCA
>Reut_A3329(gcvT) Score=39.2 Pos=-219 [Ralstonia eutropha JMP134]
TGCCGCACTCTGGAGAGCGGCACCCGCCATCAATGGCGAGCGTGCCCACCGAAGGGGCGCGCGAGGATCGGATCCAACGGATCGGCCTCGTAATCTCTCAGGTATCGAGGACAGAGGGGTCATCCG
>Reut_B3726(dadA) Score=40.3 Pos=-241 [Ralstonia eutropha JMP134]
GCGACCTCGCAGGAGAGACCGGAACGCCGCCAGGCGCGTCCGGCGCCGACGGAGCAACCGCCCCGGAAACTCTCAGGCACACAGGACTGTGGCGTCG
>Reut_B3726(dadA) Score=46.8 Pos=-142 [Ralstonia eutropha JMP134]
AGTACAGATCTGGAGAGAGGCGCTTTGCGCCCACCGAAGGGGACGGCATGGCCTGGCCATGTCCAAGCTCTCAGGTACCGCGGACAGATGGGGCAGGGG
# RNA - SAH_riboswitch
>Reut_A0213(ahcY) Score=61.1 Pos=-202 [Ralstonia eutropha JMP134]
ACTCCGAGGAGCGTTGCAACGGATCGTGGCGTAACATGCCCTCCGCCAGGCTCGGACTGTCTTCAACGGCGCTCGCTGATCCG
# RNA - yybP-ykoY
>Reut_A0916(ykoY) Score=68.8 Pos=-231 [Ralstonia eutropha JMP134]
GCGTCCCTTCAAAGGGGAGTAGCTCCGGGGCCATGCCCTTAGCACAATCGTCATTCCGAGACTGACGTCTCCGGTTGTGCTGACACTGGTGCGCAGACCGCGCCAGACGTCGAGCAAGACCTTTGCAACCTGG
# RNA - ykkC-yxkD
>Reut_B3481 Score=74 Pos=-170 [Ralstonia eutropha JMP134]
ACCGAAGGGTAGCTAGGGTTCCGGTCGTGCCATGCGCGCGATGGCTGGTCCGAGAGCGACCGGCCACCGGCACCTGATCCGCCGGCGGCTCCACGGCGGGACAAAAGCCCGGGAGGT
>Reut_B4888(uctB) Score=76.2 Pos=-175 [Ralstonia eutropha JMP134]
ACCGAAGGGTCGCTAGGGTTCCGGTCGCGCTGCGCGCGATGTCTGGTCCAAGAGCAACCGGCCTCAGGCGCGCTCGACCGCGTCCAGGCTCCACGGCGGGACAAAAGCCCGGGAGGT
# RNA - mini-ykkC
>Reut_B4883(ucaA) Score=37.8 Pos=-72 [Ralstonia eutropha JMP134]
CGCCGCGGGACGACCCGTGGCCGATACGCAACCGGCAGGACGACCTGC
# RNA - sucA
>Reut_A2047(sucA) Score=80 Pos=-88 [Ralstonia eutropha JMP134]
TTTGCGATCCGCTAACCGGTCAAGCCGTGTCGCGGAAGGTTGAATAACCCGCTGAACTCCGGCATACCCGGAGAAAAGTGAGCG
# TF - RutR: Reut_B3988
>Reut_B3985(ribA2) Score=7.1 Pos=-45 [Ralstonia eutropha JMP134]
ACTTGACCATTTGGTCAGGA
# TF - PhnF: Reut_B4185
>Reut_B4185(phnF) Score=6.7 Pos=-243 [Ralstonia eutropha JMP134]
CCTATACGTCTATACGTGTAGA
>Reut_B4186(phnG) Score=6.7 Pos=-29 [Ralstonia eutropha JMP134]
TCTACACGTATAGACGTATAGG
# TF - PaaR: Reut_A3212
>Reut_A3015(paaF) Score=6.2 Pos=-61 [Ralstonia eutropha JMP134]
ACCGACCGATCGGTCGGTTAAT
>Reut_A3206(paaA) Score=6.2 Pos=-95 [Ralstonia eutropha JMP134]
ATTGACCGACCGGTCGGCTTAT
>Reut_A0110(paaG) Score=6.4 Pos=-73 [Ralstonia eutropha JMP134]
ATTTACCGACCGGCCGGTTGGT
# TF - HrcA: Reut_A1036
>Reut_A2657(groS) Score=7.8 Pos=-130 [Ralstonia eutropha JMP134]
TTAGCACTCGCTGGGGGTGAGTGCTAA
>Reut_A0325(rpoH) Score=7.9 Pos=-104 [Ralstonia eutropha JMP134]
TTAGCACTCACCCGGCTTGAGTGCTAA
# TF - CueR: Reut_A3375
>Reut_A3377(copZ) Score=5.5 Pos=-82 [Ralstonia eutropha JMP134]
CGCTTCCCACCATGGGAAGGT
>Reut_A3376(copA) Score=5.6 Pos=-59 [Ralstonia eutropha JMP134]
ACCTTCCTATGATGGTAAGGT
# TF - MerR: pJP4_53, Reut_D6498
>Reut_D6497(merT) Score=6.3 Pos=-63 [Ralstonia eutropha JMP134]
ACTCCGTACATGAGTACGGAAG
>pJP4_52(merT) Score=6.3 Pos=-63 [Ralstonia eutropha JMP134]
ACTCCGTACATGAGTACGGAAG
# TF - CadR-PbrR: Reut_A3299
>Reut_A3299(cadR) Score=5.7 Pos=-31 [Ralstonia eutropha JMP134]
ACCCCGTAGTCACTACAGAGA
>Reut_B3972(cadA) Score=6.3 Pos=-61 [Ralstonia eutropha JMP134]
ACTCTGTAGCGGCTACAGGGT
# TF - HutC: Reut_A0895, Reut_A2717
>Reut_A0896(hutU) Score=5.6 Pos=-94 [Ralstonia eutropha JMP134]
ATGCTTGTATATACAACACT
>Reut_A2720(hisX) Score=5.7 Pos=-94 [Ralstonia eutropha JMP134]
TGACTTGTATATACAGGATT
>Reut_A2716(hutH) Score=5.6 Pos=-40 [Ralstonia eutropha JMP134]
TAAGCTGTATAGACAGGAAC
>Reut_A2720(hisX) Score=5.4 Pos=-249 [Ralstonia eutropha JMP134]
ACTCCTGTCTATACAGCAAC
>Reut_B5636(hutU) Score=5.6 Pos=-94 [Ralstonia eutropha JMP134]
ATGCTTGTATATACAACACT
# TF - HpxR: Reut_B4528
>Reut_B4531(uraA) Score=6.9 Pos=-119 [Ralstonia eutropha JMP134]
TAACCAAAACGTTTTGGCTA
# TF - Rmet_4647: Reut_A1198
>Reut_A1198(Rmet_4647) Score=6.4 Pos=-108 [Ralstonia eutropha JMP134]
TTCGGAAAACGTTTTCAGAT
>Reut_A1197(Rmet_4645) Score=6.4 Pos=-66 [Ralstonia eutropha JMP134]
ATCTGAAAACGTTTTCCGAA
# TF - H16_B1761
>Reut_A2448(COG2814) Score=5.2 Pos=-198 [Ralstonia eutropha JMP134]
GATTGTTCAACAATA
>Reut_A2447(SCO1410) Score=5.2 Pos=-189 [Ralstonia eutropha JMP134]
TATTGTTGAACAATC
# TF - PhnR2: Reut_B3719
>Reut_B5874(phnS) Score=5 Pos=-139 [Ralstonia eutropha JMP134]
ATTGTCAACAGT
>Reut_B3719(phnR2) Score=5.2 Pos=-81 [Ralstonia eutropha JMP134]
ATTGTTGACAAT
>Reut_B3718(phnW) Score=5.2 Pos=-273 [Ralstonia eutropha JMP134]
ATTGTCAACAAT
>Reut_B5875 Score=5 Pos=-45 [Ralstonia eutropha JMP134]
ACTGTTGACAAT
# TF - SdaR: Reut_A1260
>Reut_A1260(sdaR) Score=5.7 Pos=-34 [Ralstonia eutropha JMP134]
AATCTGTCTGACAGCCT
# TF - UraR: Reut_A2435
>Reut_A1294(atzB) Score=3.4 Pos=-1 [Ralstonia eutropha JMP134]
TTTGTGGACATC
>Reut_A2435(uraR) Score=5.2 Pos=-114 [Ralstonia eutropha JMP134]
ATTGTCAACAAT
>Reut_A2435(uraR) Score=5.2 Pos=-146 [Ralstonia eutropha JMP134]
TTTGTTGACAAT
>Reut_A2434(pucM) Score=5.2 Pos=-204 [Ralstonia eutropha JMP134]
ATTGTCAACAAA
>Reut_A2434(pucM) Score=5.2 Pos=-236 [Ralstonia eutropha JMP134]
ATTGTTGACAAT
# TF - Reut_C5892: Reut_C5892
>Reut_C5893(Reut_C5893) Score=5.6 Pos=-81 [Ralstonia eutropha JMP134]
TAATGACTACGTAACCAAAT
# TF - MetR: Reut_B4244
>Reut_B4244(metR) Score=5.9 Pos=-54 [Ralstonia eutropha JMP134]
TATGAATGAATTTCATA
>Reut_B4245(metE) Score=5.9 Pos=-66 [Ralstonia eutropha JMP134]
TATGAAATTCATTCATA
# TF - TauR: Reut_B3752
>Reut_B3751(tauX) Score=9.5 Pos=-148 [Ralstonia eutropha JMP134]
CTGGCCCAAG-------------CTGGTCCTAC
>Reut_A1472(tauA) Score=8.9 Pos=-289 [Ralstonia eutropha JMP134]
CTGGACCCAA-------------CTGGCACTAA
# TF - FdsR: Reut_A0616
>Reut_A0616(fdsR) Score=5.5 Pos=-18 [Ralstonia eutropha JMP134]
ATAAGCTATTTTGTTCATAT
>Reut_A0616(fdsR) Score=5.7 Pos=-105 [Ralstonia eutropha JMP134]
ATATGCTATTTTTTTCCTAT
>Reut_A0617(fdsG) Score=5.5 Pos=-149 [Ralstonia eutropha JMP134]
ATATGAACAAAATAGCTTAT
>Reut_A0617(fdsG) Score=5.7 Pos=-62 [Ralstonia eutropha JMP134]
ATAGGAAAAAAATAGCATAT
# TF - ModE3: Reut_A0932
>Reut_A0931(tupB) Score=5.8 Pos=-35 [Ralstonia eutropha JMP134]
TTATGTTTATCGAAACATAA
>Reut_A0932(modE3) Score=5.8 Pos=-128 [Ralstonia eutropha JMP134]
TTATGTTTCGATAAACATAA
# TF - H16_B0275: Reut_C6135
>Reut_C6136(PF01966) Score=6.9 Pos=-176 [Ralstonia eutropha JMP134]
CAATAGTACA--------------TCTTGGGTCT
>Reut_C6134(COG1917) Score=10.3 Pos=-89 [Ralstonia eutropha JMP134]
TCTTGGTACA--------------TCCTGGTGCT
# TF - H16_B1411: Reut_A1580
>Reut_A1579(PF05368) Score=11.1 Pos=-157 [Ralstonia eutropha JMP134]
ACTTGGCCTAGT-(12)-TCTTGGCCCTTA-(2)-CATAGGGCATGA
# TF - H16_A0963: Reut_A1805
>Reut_A1806(PF02627) Score=10.4 Pos=-125 [Ralstonia eutropha JMP134]
ACCGGTTAC-(15)-ATCGGCCAT-(5)-ATAACCAGT
# TF - OapR: Reut_A0247
>Reut_A0248(oapT) Score=14.6 Pos=-171 [Ralstonia eutropha JMP134]
TCCTGTACGGTT-(11)-AACTGTACGGTA-(15)-GACTGTATATTT
# TF - H16_A2655: Reut_A2343
>Reut_A2949(PF01810) Score=12.9 Pos=-97 [Ralstonia eutropha JMP134]
CTGCCGTCACG-(13)-AAACTGTACCG-(0)-GTACTGTACTG
>Reut_A2344(h16_A2656) Score=15.1 Pos=-72 [Ralstonia eutropha JMP134]
CAACTGTACTG-(13)-TAACTGTACCG-(0)-GTACTGTACCG
# TF - YdcR: Reut_B3939
>Reut_A1452(h16_A1590) Score=8.4 Pos=-119 [Ralstonia eutropha JMP134]
ATCTGATATGCAAGA---------ATCTGCTGCTGTCAT
>Reut_B4284(PF01654) Score=8.5 Pos=-290 [Ralstonia eutropha JMP134]
CTCTGATACGGTCTT---------TTTTGCTTCTGTTCT
# TF - Rmet_5631: Reut_B5139
>Reut_B5140(sgaA) Score=5.2 Pos=-188 [Ralstonia eutropha JMP134]
ATCTTGCATGCAAAGT
>Reut_B5140(sgaA) Score=5.9 Pos=-32 [Ralstonia eutropha JMP134]
ATTTTGAATGCAAAAT
>Reut_B5139(Rmet_5631) Score=5.9 Pos=-163 [Ralstonia eutropha JMP134]
ATTTTGCATTCAAAAT
>Reut_B5139(Rmet_5631) Score=5.2 Pos=-7 [Ralstonia eutropha JMP134]
ACTTTGCATGCAAGAT
# TF - H16_B1468: Reut_B4094
>Reut_B4101(cydA) Score=6.8 Pos=-123 [Ralstonia eutropha JMP134]
AACTGAGCTTGCGCA----------AACTGTACCCCTCCC
>Reut_B4091(fdhA2) Score=7.8 Pos=-132 [Ralstonia eutropha JMP134]
AACTGTGCTCTTGAA----------GTCTGTACGCACCGC
# TF - H16_A0970: Reut_A2460
>Reut_A2460(H16_A0970) Score=15.6 Pos=-118 [Ralstonia eutropha JMP134]
ACAGCCACAACAGA-(11)-ACCGGAACAGTGCA-(8)-CTGTCTGTTACGAT-(11)-CCGTCTGTATCTGT
>Reut_A2459(h16_A0972) Score=20.5 Pos=-631 [Ralstonia eutropha JMP134]
ACAGATACAGACGG-(11)-ATCGTAACAGACAG-(8)-TGCACTGTTCCGGT-(11)-TCTGTTGTGGCTGT
# TF - RALTA_A0216: Reut_A0251
>Reut_A0252(PF11142) Score=20.5 Pos=-130 [Ralstonia eutropha JMP134]
AACTGTCAGG-(8)-CTGAACAGTT-(7)-AACTGTTCAC-(0)-AACTGTACAT
# TF - MlnR: Reut_A0644
>Reut_A0644(mlnR) Score=6.5 Pos=-77 [Ralstonia eutropha JMP134]
TCATCCATAATTATGAATTA
# TF - YrdX3: Reut_B4580
>Reut_B4579(cyoA2) Score=15 Pos=-101 [Ralstonia eutropha JMP134]
CTTGTAGGTGG-(20)-CTTGTATGGAT-(36)-ATCCATACAAA
>Reut_B4580(yrdX3) Score=9.2 Pos=-100 [Ralstonia eutropha JMP134]
TTTGTATGGAT-(18)-ATGGTAAGGTA-(36)-ATCCACCTACA
# TF - GguR: Reut_B3714
>Reut_B3715(gudD) Score=5.1 Pos=-87 [Ralstonia eutropha JMP134]
AAGTCATACGACGACTG
>Reut_A1006(tctC1) Score=5 Pos=-45 [Ralstonia eutropha JMP134]
ATGTTGTATGACGACTG
>Reut_A1006(tctC1) Score=5 Pos=-180 [Ralstonia eutropha JMP134]
ATGTCATCAGACAACAG
>Reut_B3689(gudP1) Score=5.1 Pos=-67 [Ralstonia eutropha JMP134]
CAGTCATACGACGACAT
>Reut_B3689(gudP1) Score=4.8 Pos=-283 [Ralstonia eutropha JMP134]
ACGTCATCGTACAACTA
>Reut_B3714(gguR) Score=5.1 Pos=-80 [Ralstonia eutropha JMP134]
CAGTCGTCGTATGACTT
>Reut_B3688(kdgD) Score=4.8 Pos=-102 [Ralstonia eutropha JMP134]
TAGTTGTACGATGACGT
>Reut_B3713(kgsD) Score=4.3 Pos=-97 [Ralstonia eutropha JMP134]
ATGTCATATGATGTCCT
# TF - TalR: Reut_B4642
>Reut_B4643(talD) Score=6.3 Pos=-85 [Ralstonia eutropha JMP134]
GAATGACAACGTTAGCATTT
>Reut_B4643(talD) Score=6.7 Pos=35 [Ralstonia eutropha JMP134]
AAATGATAACGTTATCATTA
>Reut_B4642(talR) Score=6.7 Pos=-201 [Ralstonia eutropha JMP134]
TAATGATAACGTTATCATTT
>Reut_B4642(talR) Score=6.3 Pos=-81 [Ralstonia eutropha JMP134]
AAATGCTAACGTTGTCATTC