# TF - NsrR: BPSL2376, BPSL1483
>BPSL2355(nnrS) Score=4.6 Pos=-39 [Burkholderia pseudomallei K96243]
CATGCATCAAGAAAGCAAC
>BPSS1139(PF10006) Score=4.5 Pos=-144 [Burkholderia pseudomallei K96243]
GTTGCTCACAATATGCATC
>BPSL2351(norB) Score=4.6 Pos=-93 [Burkholderia pseudomallei K96243]
CATACATTCTTTGTACATG
>BPSL2840(hmp) Score=4.4 Pos=-39 [Burkholderia pseudomallei K96243]
GATGTATCGTTTGCGAATG
>BPSL2368(nnrS) Score=5 Pos=-36 [Burkholderia pseudomallei K96243]
GATACATAATAAATGCATC
# TF - HexR: BPSL2933
>BPSL2933(hexR) Score=6 Pos=-69 [Burkholderia pseudomallei K96243]
TTGTAGATTTTCTACAA
>BPSL2933(hexR) Score=5.5 Pos=-212 [Burkholderia pseudomallei K96243]
TAGTAGAAAAACTACAT
>BPSL2932(edd) Score=6 Pos=-245 [Burkholderia pseudomallei K96243]
TTGTAGAAAATCTACAA
>BPSL2932(edd) Score=5.5 Pos=-102 [Burkholderia pseudomallei K96243]
ATGTAGTTTTTCTACTA
>BPSL2612(zwf) Score=5.7 Pos=-85 [Burkholderia pseudomallei K96243]
TTGTAGTTAAACTACAA
# TF - NrdR: BPSL2757
>BPSL2356 Score=5.2 Pos=-37 [Burkholderia pseudomallei K96243]
TCACCAGATTTTGTGC
>BPSL2992(nrdA) Score=5.3 Pos=-340 [Burkholderia pseudomallei K96243]
CCACTATACTTTGGGC
>BPSL2992(nrdA) Score=5.5 Pos=-309 [Burkholderia pseudomallei K96243]
GCACTACATATAGTGT
>BPSL2356 Score=3.5 Pos=-68 [Burkholderia pseudomallei K96243]
ATACAACATCTGGTAT
# TF - Zur: BPSL0825
>BPSS1850(omr) Score=6.1 Pos=-87 [Burkholderia pseudomallei K96243]
ATATTGATACGTTATATCGTTTC
>BPSS1850(omr) Score=4.8 Pos=-199 [Burkholderia pseudomallei K96243]
GAAATGATATAACATATCGATAC
>BPSL0825(zur) Score=6 Pos=-51 [Burkholderia pseudomallei K96243]
GCGCGGATACGTTATATCATCAC
>BPSL2724(omr1) Score=5.8 Pos=-303 [Burkholderia pseudomallei K96243]
CGGATGATATGTTATATCATCGT
# TF - LldR: BPSS0320
>BPSS0320(lldR) Score=4.3 Pos=-323 [Burkholderia pseudomallei K96243]
AGTTGGTCTGACCACGC
>BPSS0321(lldE) Score=4 Pos=-142 [Burkholderia pseudomallei K96243]
GCGTGGTCAGACCAACT
# TF - HutC: BPSL2343
>BPSL2344(hutH) Score=5.8 Pos=-70 [Burkholderia pseudomallei K96243]
CAAGTTGTCTATACAACATC
>BPSS1752(COG1457 (CodB)) Score=5.1 Pos=-71 [Burkholderia pseudomallei K96243]
ACAGTTGTCTATACAATTTT
>BPSS0981(hisQ) Score=5.1 Pos=-140 [Burkholderia pseudomallei K96243]
AAAGTTGTACATACAACTTC
>BPSL2344(hutH) Score=5.5 Pos=-25 [Burkholderia pseudomallei K96243]
AAACTTGTATAGACAGGACC
>BPSL1280(hisT) Score=5.9 Pos=-79 [Burkholderia pseudomallei K96243]
CAAGTTGTCTATACAACTTC
# TF - IscR: BPSL2290
>BPSL2290(iscR) Score=7.5 Pos=-69 [Burkholderia pseudomallei K96243]
ATACTTGACTAAATTGGTCAAATAT
>BPSL2290(iscR) Score=7.8 Pos=-42 [Burkholderia pseudomallei K96243]
ATACTTGACCAAAATCGTCAAGATT
# TF - NagQ: BPSL0495
>BPSL0495(nagQ) Score=5.6 Pos=-52 [Burkholderia pseudomallei K96243]
TGGTATTATTTTGGTTAT
# TF - NtrC: BPSL2316
>BPSS1244(narK) Score=4 Pos=-294 [Burkholderia pseudomallei K96243]
CGCACGCACACAGTGCT
>BPSS1244(narK) Score=5.2 Pos=-273 [Burkholderia pseudomallei K96243]
CGCACCAGATCAGTGCT
>BPSL2318(glnA) Score=4.7 Pos=-312 [Burkholderia pseudomallei K96243]
CGCACTAAAGCGGTGCA
>BPSL2318(glnA) Score=5 Pos=-283 [Burkholderia pseudomallei K96243]
AGCACCAAATTGGTGTT
# TF - RbsR: BPSL1831
>BPSL1834(rbsB) Score=6.3 Pos=-75 [Burkholderia pseudomallei K96243]
CTGCGCAAACGTTTGCTCGT
# TF - ModE: BPSS1789
>BPSS1786(modA) Score=5.7 Pos=-58 [Burkholderia pseudomallei K96243]
CGTTATAACCTCGCGTATATTACG
# TF - LexA: BPSL1840
>BPSL2495(PF04055) Score=6.3 Pos=-67 [Burkholderia pseudomallei K96243]
TACTGTATGTTTATACAGTA
>BPSS0003(PF10616) Score=6.2 Pos=10 [Burkholderia pseudomallei K96243]
TACTGTATATTCGTACAGTA
>BPSS0058(uvrA) Score=5.6 Pos=-143 [Burkholderia pseudomallei K96243]
AGCTGTATAAATATCCAGTA
>BPSL0776(recA) Score=6 Pos=-108 [Burkholderia pseudomallei K96243]
CACTGTTTTTTTATACAGTG
>BPSL1840(lexA) Score=5.9 Pos=-45 [Burkholderia pseudomallei K96243]
TACTGTATAAAAATACAGCT
>BPSL1840(lexA) Score=5.6 Pos=-25 [Burkholderia pseudomallei K96243]
CACTGTCTATCCATACAGTC
>BPSS1334(BPSS1334) Score=5.7 Pos=-29 [Burkholderia pseudomallei K96243]
TACTGTATTTATGTCCAGTG
>BPSL2306(dinB) Score=5.9 Pos=-28 [Burkholderia pseudomallei K96243]
CACTGTGTTTTTGTACAGTA
# TF - PsrA: BPSL1882
>BPSL1882(psrA) Score=5.2 Pos=-74 [Burkholderia pseudomallei K96243]
ATGAAAACGGCTGTTTCAAT
>BPSL2442(fabH) Score=5.9 Pos=-177 [Burkholderia pseudomallei K96243]
GATCAAACGCGGGTATGATG
# TF - RutR: BPSS0273
>BPSS0273(rutR) Score=6.7 Pos=-160 [Burkholderia pseudomallei K96243]
TCCTGTCCGAATGGTCAGGT
# TF - FadP: BPSL0647
>BPSL0328(nppD) Score=5.2 Pos=-154 [Burkholderia pseudomallei K96243]
TGGCACGACCGTTCGT
>BPSL1424(fadB) Score=5.4 Pos=-148 [Burkholderia pseudomallei K96243]
TTGAACGACCGTTCTT
>BPSL2500(etfB) Score=5.6 Pos=-147 [Burkholderia pseudomallei K96243]
TAGAACGACCGTTCGC
>BPSL1961(etfD) Score=5.7 Pos=-104 [Burkholderia pseudomallei K96243]
TAGAACGATCGTGCTA
>BPSL1227 Score=5.4 Pos=-60 [Burkholderia pseudomallei K96243]
TAGCACGGTCGTTCAA
>BPSL3037(fadD1) Score=5.3 Pos=-39 [Burkholderia pseudomallei K96243]
TAGCACGACCATTCGA
>BPSL0647(fadP) Score=5.3 Pos=-52 [Burkholderia pseudomallei K96243]
TAGTACGGCCGTTCGA
# TF - LiuQ: BPSS1449
>BPSS1448(liuA) Score=5.3 Pos=-155 [Burkholderia pseudomallei K96243]
CTGAGTGTCGCTCAA
>BPSS1448(liuA) Score=5.2 Pos=-55 [Burkholderia pseudomallei K96243]
TTGAGCAAGACTCAA
>BPSS1449(liuQ) Score=5.2 Pos=-167 [Burkholderia pseudomallei K96243]
TTGAGTCTTGCTCAA
>BPSS1449(liuQ) Score=5.3 Pos=-67 [Burkholderia pseudomallei K96243]
TTGAGCGACACTCAG
# TF - PhnF: BPSL2858
>BPSL2850(phnC) Score=5.3 Pos=-61 [Burkholderia pseudomallei K96243]
GAAAAACATCTAGACGTATATA
>BPSL2850(phnC) Score=5.3 Pos=-53 [Burkholderia pseudomallei K96243]
TCTAGACGTATATACGGATTCA
>BPSL2857(phnG) Score=6.9 Pos=-66 [Burkholderia pseudomallei K96243]
TATAGACGTCTAGACGTTTAGA
>BPSL2858(phnF) Score=6.9 Pos=-88 [Burkholderia pseudomallei K96243]
TCTAAACGTCTAGACGTCTATA
# TF - PaaR: BPSL3236
>BPSL3041(paaZ) Score=6.4 Pos=-64 [Burkholderia pseudomallei K96243]
TCCGACCAACCGGTCGGTTAAT
>BPSL3230(paaA) Score=7.1 Pos=-62 [Burkholderia pseudomallei K96243]
ATTAACCGACCGGTCGGTTGGT
>BPSL3040(paaG) Score=6.6 Pos=-70 [Burkholderia pseudomallei K96243]
ATTAACCGACCGGTTGGTCGGA
# RNA - FMN
>BPSL0678(ribB) Score=95.6 Pos=-290 [Burkholderia pseudomallei K96243]
TGCGTCTTCAGGGCGGGGCGAAATTCCCCACCGGCGGTAGGCCGGCATGTTGCCGGCGAGCCCGCGAGCGCCCGCGCGATTGCGCGCGGGGTCAGCAGATCTGGTCCGATGCCAGAGCCGACGGTCATAGTCCGGATGAAAGAAGATGTGCAG
# RNA - TPP
>BPSL3154(thiO) Score=50.2 Pos=-364 [Burkholderia pseudomallei K96243]
GCCGACGAAACAGGGGTGCTTCGCGCGTCCCCGGCCTGCCGAGTCGGCACGGCCGGATGCGCGACGAGGCTGAGAGAGACCCTTCGCACCCGATCCGGGTAATACCGGCGCGGGAAGTTTCCGATCCCGCCGG
>BPSL1290(thiC) Score=59 Pos=-241 [Burkholderia pseudomallei K96243]
CTTGCTAACGCGGGGGTCCTGCAATGCGCTCGGTCAAACGATCGTGCGCAGCGGGTGAGAAATACCCTTTGAACCTGATCTGGATAATGCCAGCGCAGGGAAGCGTCAGGGTTTCGCCG
>BPSS1111(emrE) Score=61 Pos=-175 [Burkholderia pseudomallei K96243]
CCCGGCCATCAGGGGGAGCCGACGATCGGCTGAGAGGTTCCGCGCGCGGAACGACCCCTAAACCTGATCCGGGTAATGCCGGCGTAGGAATGAGGTCCGCGATGAGT
# RNA - Cobalamin
>BPSL1759(cobG) Score=68.1 Pos=-309 [Burkholderia pseudomallei K96243]
TACAGCGTCCGTCGACCGGCGCCCCACGGGGCCCAAGAGGGAACGCAGGGCGCGCCGCGCCGCTGCGGCTGCCCCCGCAACTGTGAGCAGCGAGTCCGCATCCGATTCACGCCACTGGCCACGCCGCCCTTTCGCGGCCGCCGGGAAGGCCCGCTGCGGACGACGACCTGCCAGCCAGGAGACCTGCCGGGACGTTTCGTTCGTGCAA
>BPSL1770(hoxN) Score=37.8 Pos=-586 [Burkholderia pseudomallei K96243]
CGTTTCGGTGCTCGCGCGCGGTTTCTGTCGCGCGCAGTCAAACGGGAAACAGGGAGCGTCGCCGCGTCGCGGCCCGCCAACCTGTGCTGCCCCCGCAACGGTAAGCGAAGGCATCGCGCGAGCGGTGCGACGCCGGCTTCTCCGCGCGCCTGACGGCTTGCGCGGCCAACCACTGGACGCATCGCGTCCGGGAAGGTGAAGCGGCGTTTTCGTCAGCCCGGATACCGGCCGAGACACGGGGCCCGTTC
>BPSL0976(btuB) Score=17.7 Pos=-335 [Burkholderia pseudomallei K96243]
TAAACTGGCGCCGCCTCGGTGCTCGCGCGCTTCGCGCGCGGTTAAACGGGAAGCAGGGCGCGACGTCCGCCAGGGCCGAGCCAACCTGCGCTGCCCCCGCAACGGTAAGCGATCGCATCGGAGCCGATCCGATGCCAGCCGCACTCTCGA
# RNA - SAH_riboswitch
>BPSL3290(ahcY) Score=46.5 Pos=-175 [Burkholderia pseudomallei K96243]
CGTTTCCGAGGAGCGTTGCGACGGGCCCCGCCCGCCAGGCTCGGAAATGGTCAACCGAGCGGTGTGTCG
# RNA - Glycine
>BPSL3360(gcvT) Score=29.8 Pos=-233 [Burkholderia pseudomallei K96243]
TTTCGCACTCTGGAGAGCGGCAGTAGCCGCGTGCGCGCAACGCGACGCACGGGCAGGCTGCCCACCGAAGGGGCGCGCGCGAGCCGGATCGAAACCGTCGCGCAATCTCTCAGGTATCGAGGACAGAGGGGCATGCAC
>BPSL3360(gcvT) Score=37.5 Pos=-375 [Burkholderia pseudomallei K96243]
CGCACGCGTCGGGAGAGCGCGCGGCCGCCGTTCGTTGATCGAAAGGCAAGCCGCGCCGCCGAAGGGGCACACCCGCAAACTCTCAGGCAAAAGGACCGACCGCGTCGAAG
# RNA - yybP-ykoY
>BPSL2542(COG2119) Score=35.6 Pos=-212 [Burkholderia pseudomallei K96243]
CGCTCCTCATTGGGGAGTAGCCGCTCCGCTCGAGCCGACGCCGCCCGGCGCGCTCGTGACGGAGGCGTCCGTCAACAGACTTGGCCGTCGCGGCCATGGCGGACGCAGCCCGCAGGGCCTGGCGAGACCGATGGTTCTCCGCA
# RNA - mini-ykkC
>BPSL1177(ykkC) Score=45 Pos=-69 [Burkholderia pseudomallei K96243]
CCCGGGGACGACCCCGGGCCGTCGATGTTCAACGGGGACGACCCCAAT
# RNA - sucA
>BPSL1909(sucA) Score=80.2 Pos=-88 [Burkholderia pseudomallei K96243]
CGCGCAATCCGCTAAACGGTCAGGCCGTGTCGCGGAAGGTTGAGTAACCCGCTATTTCTCGAGAAGCTCGAAGAAAGGTGAGCG
# TF - HrcA: BPSL2832
>BPSL0504(rpoH) Score=7.2 Pos=-88 [Burkholderia pseudomallei K96243]
TTAGCACTCCAGTAGACGGAGTGCTAA
>BPSL2698(groS) Score=7.9 Pos=-103 [Burkholderia pseudomallei K96243]
TTAGCACTCGCTGCACGAGAGTGCTAA
# TF - NmlR: BPSL1487
>BPSL1487(nmlR) Score=6.2 Pos=-37 [Burkholderia pseudomallei K96243]
CTTAGAGTGCACTCTAAG
# TF - CueR: BPSS0351
>BPSL0301(copZ) Score=5.6 Pos=-11 [Burkholderia pseudomallei K96243]
ACCTTCCCACAGTGGGAAGAT
# TF - CadR-PbrR: BPSL3379
>BPSL3378(cadA) Score=6.4 Pos=-57 [Burkholderia pseudomallei K96243]
ACCTTGTAGTGACTACAAGGT
# TF - PtxS: BPSL1578
>BPSL1574(kguE) Score=6.9 Pos=-61 [Burkholderia pseudomallei K96243]
GAATGGAACCGGTTCCATTT
# TF - ScrR: BPSS0544
>BPSS0543(sacB) Score=6.1 Pos=-92 [Burkholderia pseudomallei K96243]
CGCCCAAACCGGTTTGAATT
>BPSS0543(sacB) Score=6.8 Pos=-70 [Burkholderia pseudomallei K96243]
CATCCAAACCGGTTTGGATA
>BPSS0544(scrR) Score=6.8 Pos=-138 [Burkholderia pseudomallei K96243]
TATCCAAACCGGTTTGGATG
>BPSS0544(scrR) Score=6.1 Pos=-116 [Burkholderia pseudomallei K96243]
AATTCAAACCGGTTTGGGCG
# TF - GabR: BPSS1739, BPSS0282
>BPSS1738(gbtA) Score=11.9 Pos=-107 [Burkholderia pseudomallei K96243]
GTGGTTC-(16)-ATGGTTC-(9)-GAACCGT
>BPSS0281(gabT) Score=11.9 Pos=-139 [Burkholderia pseudomallei K96243]
TTGGCTC-(16)-ATGGCTC-(9)-GAGCCAA
# TF - BPSL1304: BPSL1304
>BPSL1301(RSc1793) Score=6.5 Pos=-34 [Burkholderia pseudomallei K96243]
CGACGAAAACGTTTACATCG
>BPSL1304(BPSL1304) Score=6 Pos=-36 [Burkholderia pseudomallei K96243]
CGACGAAAACGTTTACACGC
# TF - FdsR: BPSL2527
>BPSL2527(fdsR) Score=5.7 Pos=-21 [Burkholderia pseudomallei K96243]
ATAGGAAACGGAATTGCATAA
>BPSL2528(fdsG) Score=5.7 Pos=-88 [Burkholderia pseudomallei K96243]
TTATGCAATTCCGTTTCCTAT
>BPSL2527(fdsR) Score=4.7 Pos=-107 [Burkholderia pseudomallei K96243]
ATATGCGCTTATGATTCATAT
# TF - UraR: BPSL2121
>BPSL2121(uraR) Score=5.2 Pos=-47 [Burkholderia pseudomallei K96243]
ATTGTTGACAAT
>BPSL2121(uraR) Score=5.3 Pos=-190 [Burkholderia pseudomallei K96243]
ATTGTCGACAAA
# TF - UreR: BPSL2947
>BPSL2947(ureR) Score=5.9 Pos=-203 [Burkholderia pseudomallei K96243]
ACTGGTCAGACCAGT
>BPSL2947(ureR) Score=4.4 Pos=-30 [Burkholderia pseudomallei K96243]
GCCGGTCAGACCGCG
>BPSL2946(dctA) Score=4.4 Pos=-230 [Burkholderia pseudomallei K96243]
CGCGGTCTGACCGGC
>BPSL2946(dctA) Score=5.9 Pos=-57 [Burkholderia pseudomallei K96243]
ACTGGTCTGACCAGT
# TF - MetR: BPSL2546
>BPSL2546(metR) Score=4.9 Pos=-41 [Burkholderia pseudomallei K96243]
ATGAATTTTTTTCAA
>BPSL2545(metE) Score=4.9 Pos=-90 [Burkholderia pseudomallei K96243]
TTGAAAAAAATTCAT
# TF - PdxW: BPSS0726
>BPSS0727(pdxO) Score=11.6 Pos=-103 [Burkholderia pseudomallei K96243]
CGTGGCTCCAA-(13)-CATGGATCTAT-(2)-ATGGTGCCACA
>BPSS0727(pdxO) Score=8.3 Pos=-67 [Burkholderia pseudomallei K96243]
CATGGTGCCAC-(13)-TCGAGCTCTTC-(2)-AACGAACATGC
# TF - BPSL1086: BPSL1086
>BPSL1085(BMA1950) Score=19.1 Pos=-138 [Burkholderia pseudomallei K96243]
CAACTGTACCG-(13)-CGATTGTACCG-(0)-TTACTGTGCCG-(8)-GATTACAGTTT
>BPSS0050(PF01810) Score=18.8 Pos=-110 [Burkholderia pseudomallei K96243]
ATCCCGTACCG-(13)-AAACTGTATCG-(0)-GTACTGTACAG-(8)-CACTACACTCA
# TF - PdxQ3: BPSS0449
>BPSS0450(PF01965) Score=13.6 Pos=-85 [Burkholderia pseudomallei K96243]
GATGTATC-(1)-ATGACAAT-(6)-ATTGTATT
# TF - SdhR: BPSS1721
>BPSS1722(mdh) Score=7.5 Pos=-245 [Burkholderia pseudomallei K96243]
ACATCTGTCTTATATAAGACATAAGA
>BPSL0896(icd) Score=6.3 Pos=-175 [Burkholderia pseudomallei K96243]
TCTTTTGTCTTATATAAGACTTGCGC
>BPSS1721(sdhR) Score=7.5 Pos=-79 [Burkholderia pseudomallei K96243]
TCTTATGTCTTATATAAGACAGATGT
# TF - PdxW2: BPSL1310
>BPSL1309(pdxO2) Score=9.9 Pos=-118 [Burkholderia pseudomallei K96243]
TCCGGTTC-(16)-ACTGGTTC-(8)-AAACCGGT
# TF - BPSS1200: BPSS1200
>BPSS1201(PF02627) Score=12.7 Pos=-118 [Burkholderia pseudomallei K96243]
GGCGGTCTC-(15)-ATTGGCTAT-(5)-ATAGCCACC
# TF - BPSS0970: BPSS0970
>BPSS0969(fdhA2) Score=9.1 Pos=-108 [Burkholderia pseudomallei K96243]
AACTGTGCTCTTTTT----------AGGTGTGCTCCCGCC
# TF - YdcR: BPSL1321
>BPSL1319(cysI) Score=9.4 Pos=-145 [Burkholderia pseudomallei K96243]
ATCTGCTGCGCAAAA---------ATCTGCTGCTTGTTG
>BPSL1320(PF11174) Score=8.7 Pos=-112 [Burkholderia pseudomallei K96243]
ATCTGCTGCGCGAAA---------AACTGCTGCTTTCCT