# TF - NagR: LJ1739
>LJ1581(glmS) Score=5.1 Pos=-130 [Lactobacillus johnsonii NCC 533]
CTTTTGATATAGACCAATTA
>LJ1581(glmS) Score=4.4 Pos=-29 [Lactobacillus johnsonii NCC 533]
TAAATGAACTATACCAAAGG
>LJ0531 Score=5.8 Pos=-64 [Lactobacillus johnsonii NCC 533]
AAATAGGTATATACCAATTA
>LJ1822(PF00248) Score=5.4 Pos=-109 [Lactobacillus johnsonii NCC 533]
TCATTGGTCTAGTCCATTAT
>LJ1822(PF00248) Score=5.4 Pos=-81 [Lactobacillus johnsonii NCC 533]
AAATTGGTCTAGTCAAATTA
>LJ1823(nagB) Score=5.4 Pos=-65 [Lactobacillus johnsonii NCC 533]
TAATTTGACTAGACCAATTT
>LJ1823(nagB) Score=5.4 Pos=-37 [Lactobacillus johnsonii NCC 533]
ATAATGGACTAGACCAATGA
# TF - PurR: LJ0207
>LJ1829(pbuO) Score=5.2 Pos=-32 [Lactobacillus johnsonii NCC 533]
AAATCCGAACATT
>LJ1827(pbuO) Score=5.6 Pos=-29 [Lactobacillus johnsonii NCC 533]
AAAAACGAACATT
>LJ0207(purR) Score=4.1 Pos=-105 [Lactobacillus johnsonii NCC 533]
TATTACGAACAAT
>LJ0442(purA) Score=4.3 Pos=-120 [Lactobacillus johnsonii NCC 533]
AAAAATGAATATT
>LJ0441(guaC) Score=4.1 Pos=-160 [Lactobacillus johnsonii NCC 533]
AAAACCGAAGACT
# TF - CcpA: LJ0491
>LJ0211(agl) Score=5 Pos=-53 [Lactobacillus johnsonii NCC 533]
TTGTAAGCGCTTATAA
>LJ0194(bglB) Score=4.7 Pos=-28 [Lactobacillus johnsonii NCC 533]
ATGTAAGCGATTGCAA
>LJ0171(lacX) Score=4.2 Pos=-84 [Lactobacillus johnsonii NCC 533]
ATGTTATCGCTTACAG
>LJ0859(galK) Score=5.1 Pos=-36 [Lactobacillus johnsonii NCC 533]
ATGAAAACGATTACAA
>LJ0569(agl3) Score=4.8 Pos=-35 [Lactobacillus johnsonii NCC 533]
TTGAAAGCGAATACAA
>LJ0503(manL) Score=4.4 Pos=-106 [Lactobacillus johnsonii NCC 533]
ATGCAAGCATTTTCAA
>LJ0503(manL) Score=4.1 Pos=-68 [Lactobacillus johnsonii NCC 533]
AAGCAAACGTATACAT
>LJ0570(fruR) Score=4.1 Pos=-40 [Lactobacillus johnsonii NCC 533]
CTGAAAGCGTTTATCA
>LJ0623(licT) Score=4.7 Pos=-141 [Lactobacillus johnsonii NCC 533]
ATGTAAGCGCTATTAT
>LJ0643(pnuC) Score=4.6 Pos=-173 [Lactobacillus johnsonii NCC 533]
AAGAAAGCGCTATCTA
>LJ0916(pmi) Score=4.6 Pos=-60 [Lactobacillus johnsonii NCC 533]
TTGAAAGTGGTTTCAA
>LJ0182(bglA) Score=4.3 Pos=-35 [Lactobacillus johnsonii NCC 533]
TCGAAAACGCTTACTT
>LJ0182(bglA) Score=4.8 Pos=-132 [Lactobacillus johnsonii NCC 533]
ATGAAACCGTTTGCAA
>LJ0259(rafR) Score=4.2 Pos=-166 [Lactobacillus johnsonii NCC 533]
ATGTATACGCTTTATA
>LJ0259(rafR) Score=4.6 Pos=-200 [Lactobacillus johnsonii NCC 533]
TTGTATTCGCTTTCAA
>LJ1656(fmpA) Score=4.2 Pos=-82 [Lactobacillus johnsonii NCC 533]
CAGTAAACGATTACAT
>LJ0149(pck) Score=5 Pos=-38 [Lactobacillus johnsonii NCC 533]
TTGAAACCGCTTTCTA
>LJ0542(licT) Score=4.6 Pos=-126 [Lactobacillus johnsonii NCC 533]
AAGAAAGCGATATCAT
>LJ0635(simA) Score=5.2 Pos=-127 [Lactobacillus johnsonii NCC 533]
TTGAAAACGCTTTCTT
>LJ1079(pfk) Score=4.5 Pos=-132 [Lactobacillus johnsonii NCC 533]
TTGAAAGCGAAAACAT
>LJ1262(glcT) Score=4.6 Pos=-143 [Lactobacillus johnsonii NCC 533]
TTGCAATCGTTTACAT
>LJ1766(adhE) Score=4.5 Pos=-162 [Lactobacillus johnsonii NCC 533]
ATGTAACCGATAACAT
>LJ0671(gabD) Score=4.6 Pos=-44 [Lactobacillus johnsonii NCC 533]
AAGAAAGCGCTTTATA
>LJ0816(ptsH) Score=4.6 Pos=-109 [Lactobacillus johnsonii NCC 533]
ATGTAAACATTTACAT
>LJ0518(scrB) Score=4.6 Pos=-37 [Lactobacillus johnsonii NCC 533]
AAGAATGCGTTTACAT
>LJ0518(scrB) Score=4.3 Pos=-184 [Lactobacillus johnsonii NCC 533]
ATGATAGCGTATTCTA
>LJ0518(scrB) Score=4.7 Pos=-214 [Lactobacillus johnsonii NCC 533]
GTGTAAGCGTTTTAAA
>LJ0490(pepQ) Score=4.2 Pos=-85 [Lactobacillus johnsonii NCC 533]
TTGCAACCGTTTACGA
>LJ0491(ccpA) Score=4 Pos=-74 [Lactobacillus johnsonii NCC 533]
TCGTAAACGGTTGCAA
>LJ0759(treR) Score=4.4 Pos=4 [Lactobacillus johnsonii NCC 533]
AAGTATCCGCTTTCAT
>LJ0760(treP) Score=4.5 Pos=-36 [Lactobacillus johnsonii NCC 533]
ATGAAAGCGGATACTT
>LJ0760(treP) Score=4.4 Pos=-104 [Lactobacillus johnsonii NCC 533]
AAGTAAGCTTTTTCAT
>LJ0855(lacL) Score=4.4 Pos=-45 [Lactobacillus johnsonii NCC 533]
ATAAAAGCGTCTTCAA
>LJ0519(scrA) Score=4.4 Pos=-37 [Lactobacillus johnsonii NCC 533]
TTTAAAACGCTTACAC
>LJ0519(scrA) Score=4.6 Pos=-214 [Lactobacillus johnsonii NCC 533]
ATGTAAACGCATTCTT
>LJ0485(ackB) Score=4.4 Pos=-68 [Lactobacillus johnsonii NCC 533]
ATGAAAGCGCTATACT
>LJ1256(ydgI) Score=4.6 Pos=-35 [Lactobacillus johnsonii NCC 533]
ATGTAAGCGCTAATAA
>LJ0862 Score=4.3 Pos=-121 [Lactobacillus johnsonii NCC 533]
ATAAAAGCGTTTAATA
>LJ1853(spxB) Score=4.1 Pos=-79 [Lactobacillus johnsonii NCC 533]
CAGCAACCGCTTTCAA
>LJ0260(lacS) Score=4.2 Pos=-70 [Lactobacillus johnsonii NCC 533]
TATAAAGCGTATACAT
>LJ0260(lacS) Score=4.8 Pos=-36 [Lactobacillus johnsonii NCC 533]
TTGAAAGCGAATACAA
>LJ0229(guaA) Score=4 Pos=-120 [Lactobacillus johnsonii NCC 533]
ATTAAAGCGCTATTTT
>LJ0213(mapA) Score=4.5 Pos=-70 [Lactobacillus johnsonii NCC 533]
TGTTAAGCGCTTTCAA
# RNA - L10_leader
>LJ0415(rplJ) Score=78.9 Pos=-160 [Lactobacillus johnsonii NCC 533]
TTGTACAGTAAATTCTACCTAAGACTCGGGTGGCTAACGTGCCTTAATATCCCGCCGAGGCCAGAAAAACAAAGAGTTTTACAACTCCATGTCTTTTTGGCATGGAGTTTTTATTTCGGCTGATA
# RNA - TPP
>LJ0074(ykoE) Score=59.4 Pos=-142 [Lactobacillus johnsonii NCC 533]
GTAAATACATCTGGGGTGCCTATCGGGCTGAGAATATACCCATTGAACCTGTTTGATTAATATCAGCGTAGGGAAAATGACTATTTTTAGAC
# RNA - FMN
>LJ1088(ribU) Score=91.8 Pos=-193 [Lactobacillus johnsonii NCC 533]
GTTGTCTTCAGGGCAGGGCGAAATTCCCGACCGGCGGTTAGAGTCCGCGAGCTACACATGTAGTTGAACCTCAGGTACCGATAGTTATAGTCTAGATGGAAGAAGACAGACTA
# RNA - PyrR
>LJ1280(pyrR) Score=61.1 Pos=-98 [Lactobacillus johnsonii NCC 533]
AATGTCCTTTAAAATTAGTCCCGTGAGGCTAGCAAGGCAGGCTTAAATAAGTATGACTTAACTATAAGCTCCTAGTCTCAAGAACTAGGAGCTTTTTTATG
>LJ1279(pyrB) Score=46.5 Pos=-126 [Lactobacillus johnsonii NCC 533]
GTCAACCATTTAATTGACTCCAGAGAGGGCCAGAAGGGTTGCTATATTTTTCGTATGCAAGAATATGAAAAATAGGCCTGGAGCAATTAAATGCTTCAGGCCTTTTTGCT
>LJ0709(pyrP) Score=55.6 Pos=-158 [Lactobacillus johnsonii NCC 533]
GATGACCTTTAATATAGTCCCGTGAGGCTATCAAGGAAATCTGCGCGTAAACTATTTTTTGACATAGTTTTAAACAGAAACGACTATCTTAAAGGAAACTTCTTTAGATAGTCGTTTTTT
>LJ1282(pyrF) Score=25.8 Pos=-115 [Lactobacillus johnsonii NCC 533]
TAAACTTTAAACGGTACAGAGAGACCGCAAGTTAGAATTATTGGCTTAAATTATCTGGGAAAGTCTATACCTAGTGTCTCTCTGCGCTTGGTATAGATTTTTTTA
# RNA - L13_leader
>LJ0367(rplM) Score=45.8 Pos=-70 [Lactobacillus johnsonii NCC 533]
GTATGTTTGTCCACGATAGGCCCCGGAAACTTATTGTTTGTCAAACAGAAGAAAAA
# RNA - L19_leader
>LJ1512(rplS) Score=24.4 Pos=-55 [Lactobacillus johnsonii NCC 533]
ATGGGTATTCCGCTGGCACAAGGTGTTGATGAATGCCGT
# RNA - L20_leader
>LJ1641(infC) Score=66.9 Pos=-152 [Lactobacillus johnsonii NCC 533]
TGAGAACAAGAAGAAGCTCCCGCTTCTCGCCTAAGTTAATATTACCTCTGGGCTGATCGATAATATCTGTTGATTAAAAGCGGGCGTTAACTTTGCCCGCTTTTTTCTTGTCCT
# RNA - L21_leader
>LJ1556(rplU) Score=60.2 Pos=-96 [Lactobacillus johnsonii NCC 533]
CTCACATCTGCAACCGCACGTTTATGAGGTTAGAAGAGAATTAACGTTAATTCCACCTCATGCGGCGAGTCTAAGTATTTTT
# RNA - Lysine
>LJ0087(lysX) Score=82.9 Pos=-289 [Lactobacillus johnsonii NCC 533]
CCAATGCAATAGAGGTTGCGATAATCACAGAATCTACTTGAGTACGCGAATACAGTGAGAGTATATTTTAGGATTACCGCCGAAATAAATTTTCTTTCGTGAAGTTAATTTGTTGGTATGTAAGAGAATATCTTACATACTGTCCTGGTCGTCCCCAGGGAGCGCTATATGATTT
# RNA - Purine
>LJ1830(pbuO) Score=57.5 Pos=-178 [Lactobacillus johnsonii NCC 533]
TACTTAACAATCAAGTTATCTATATATCGTCGAAATAAGGTCGACAGTATCTACCCTGAGCCATAAATTCAGGACTATAGGTATCAGACGTCATAAATT
>LJ0227(xpt) Score=50.2 Pos=-170 [Lactobacillus johnsonii NCC 533]
TACACTCTAGATATCAAATATCTATATATCGTCGTAATAAGGTCGACAGTTTCTACCCGGAACCAATTAATTCTGGACTATAGGTAATCGATGTCATAAG
# RNA - S15
>LJ1006(rpsO) Score=23.2 Pos=-73 [Lactobacillus johnsonii NCC 533]
ATTGACGCTGTTTTCCCGCCGCCGACGGTTAACGTTGTTAATGGCAATTATTTAAAAGAGAGGTATTTTTCTAATGGCTATTTCAAAAGAAAAGAAAGATGAATTAATCAAAGAATACGCACGTCACGATGG
# TF - Rex: LJ0455
>LJ1766(adhE) Score=4.8 Pos=-289 [Lactobacillus johnsonii NCC 533]
TTATTAAAATTTTAACAT
>LJ1766(adhE) Score=5.3 Pos=-191 [Lactobacillus johnsonii NCC 533]
TTGTGAAATATTTTTCAA
>LJ1766(adhE) Score=5 Pos=-104 [Lactobacillus johnsonii NCC 533]
TTGTAAAAAGATGCACAA
>LJ0274(ldh) Score=5.4 Pos=-40 [Lactobacillus johnsonii NCC 533]
TTGTTAAATAAATCACTA
# RNA - ykoK
>LJ1155(mgtB) Score=134.1 Pos=-183 [Lactobacillus johnsonii NCC 533]
AAATAAACTGTTAGGTGAGACTCCTACGTAAATATATGCTGATGCCCAGGAACATCCAGAGATGCCAACGGGTCAAACAGGAACTGTCGAGTTAAGTCTTTTCCCAGTCAGCTAGTTGAAAAAACTTTACGTTACGTAGTGTTAAAACTGAACGACGAGTATTAAATCG
>LJ0201(mgtB) Score=127.3 Pos=-241 [Lactobacillus johnsonii NCC 533]
AAATAAACTGTTAGGTGAGACTCCTACGTGAACACATGCTGTCGCCCAGCAACATCCAGAGATGCCAACGGGTCAAACAGGGATCGTCGATATAAGGCCCTCCCCAGCCAGCTAGTTATATTTTTATAACCTTACGTCACGTAGTGTTAAAACTGAACGACGAGTATAAAAATC
# RNA - yybP-ykoY
>LJ1731(atcL) Score=51.5 Pos=-126 [Lactobacillus johnsonii NCC 533]
CTATAGATGCATAAGAGAGTAACGGCAAGTTATTGCGATAAGTTCAACAACCGAGATGGATATCTCTGGACTTATCTTAATTAGTGAGACTTATGACTGATAA
>LJ0957(atcL) Score=55.9 Pos=-172 [Lactobacillus johnsonii NCC 533]
AACCAACATATAGGGAGTAACCGGCATAAGGGTGTACTTACGGCGTCAAAACGAAATTAATTTTTCCGCTGTAAGTTTAAATGGTGAGACTATTGGCTAAACTTT
# RNA - T-box(Ala)
>LJ0474(alaS) Score=62.1 Pos=-211 [Lactobacillus johnsonii NCC 533]
GCACGTTTAGGACATATTATTAAAGTATTTTTTTCAAAGAGAGGACTGCTTGGTGAGAAGGTCTAGAAAATATTTAGTAATGCTACCTAAGTTAATTAGAGAAATAAATATTTAAAGAGGTAACAAACACTGTTGCAATCAAGGTGGTACCGCGCTGGGAGCGTCCTTGTTTT
# RNA - T-box(Asn)
>LJ0511(asnA) Score=98.2 Pos=-302 [Lactobacillus johnsonii NCC 533]
AAAAAGCAATGAAGAGACGAGTAGATAATTTTATTCTTTCAGTGAATTAGCGTTAGTGAGAAGCTAGTAGACCCTGAATTATCGAATAACACTTTTCCGCTGTGCTGCTAGCCTAAATTAAAGTAAGCTACGCCGTCATCGGTACGTTATCAAGCCGAAGAGCATGATTGTGTTCTATTAAGCTGGTCTATTTTTAGACAATTTAGGTGGTACCGCGGAAAAAAGCCTTTCGTCCTGAGAAA
# RNA - T-box(Asp)
>LJ1392(hisS) Score=40.3 Pos=-222 [Lactobacillus johnsonii NCC 533]
GGAATTATCGATGACGAAGAATGTAGATTAGCATGATCTATCTCAGAGACCGCTTGTTTGGTGAGAATAGCGGATAGGTTGCGATCTGTGACACCTTTAGCAGATAATGGATCGTTTCGCGAGCGTTAATCGCAGCAAGCAAAAGGTGGTACCGTGCTAATTTATTGCGCCCTTGAC
>LJ0753(glnQ) Score=84.7 Pos=-386 [Lactobacillus johnsonii NCC 533]
AAAAAGCGATAAAAAGAAAAGTAGGTAATCTATTTCTTTTAGTGAGTTAACGGTAGTGGAAAAGTTAGCAGACCCTGGATTATTGAAAGACACTTTTATAATGCTGCTGGCCGAAATCTTTTAAGAGAGTAAGTTTAGCCGTAAGCGGTACGTTATCTAGCCGCTGGAGCATGGTTGTGCTCTAGTCAAGTTGGTCTTTAATTAGACAATTTAGGTGGTACCGCGGAAAAAAGCCTTTCGTCCTGAGTAA
# RNA - T-box(Arg)
>LJ0686(argS) Score=76.1 Pos=-214 [Lactobacillus johnsonii NCC 533]
AAAAGGTTAAAAGTAGTAGTATTGCATATGTTTTCAGCGAGTCTATGTTTGGTGGAAGTTAGACAATGGGGCAATATGAAGGCGTGTTTAACTTTAACTTTAAAATCAATTAATAAGCGGATACTTTGTATCAAGTAGAGTGGTACCGCGGGAACTTTCTCGTCTCTTTCTA
# RNA - T-box(Gly)
>LJ1320(glyQ) Score=64.5 Pos=-209 [Lactobacillus johnsonii NCC 533]
TTTGACAACTATAAAGGAATAGAAAAGTACCAATACAGCGAGTGCAGAATGGTGGAAGTGCATTTGGGAAAAGGCACCTTTTAGTCAAAGTTGTTAATTAAGGGCAGGAAGAATATTTTCCTGAATTAGGGTGGAACCGCGAAGTAAATCGTCCCTATG
# RNA - T-box(Ile)
>LJ1574(oppA) Score=115.1 Pos=-318 [Lactobacillus johnsonii NCC 533]
AAACAGCTTTGATAAGGAAAAGTAATTAGGAAATCGTCTTTCAGAGAATTTCTGGTTGGTGTGAAGAAATAGATAGATTCTTAATGAAAATCACCTTTGAGCGTAAACTACGATTTAGAGTGGTTTAAGGGACAGCCCTTTATAGCGACGGCGTATCGTTCTCCTGTATTGAACCGTACGTTAATTAAAGACTAGTTTTCTAGTAAAAATAGGTGGTACAGCGACAAGACGCCCTATTGGA
>LJ1137(brnQ) Score=95 Pos=-180 [Lactobacillus johnsonii NCC 533]
TGAAAACAAAGAGAAAGAAGAGTAGTTTAGTCTTAATTTACAGCGAGTCTCGTTAGGTGTGAGGAGATAAATTCTAAGGTTAAATGAAAATCACTTTCGAGTTCTAATTCTTAATCTTGAGTAAGAAGAAGTGGGAGCACCCATTATAGTGCTAACGTATCGCCAAGTAATTGGCCGCACGTGAAAGGTATTGTTAGTGATAACAATATAAATAAAGGGTGGTACCACGCTGAAGCGTCCCTCAATC
>LJ0980(ileS) Score=62.9 Pos=-204 [Lactobacillus johnsonii NCC 533]
TTTAAGTCGACAGTAACAACAAGTAGATACCTTAGCGAGTTAGTGATGGTGAAAGACTAACAACTTTCGAAAGTTAATCAGCTGCCAATTGACTTAAACGTTTTCTGTACGATACACAGAGAATAAGTGGAATAGGGTAAGTGTACCCTATTCAATTTAGGTGGTACCACGAGAAGCTTCGTCCTATTTGG
# RNA - T-box(Leu)
>LJ0680(leuS) Score=85.9 Pos=-240 [Lactobacillus johnsonii NCC 533]
AAAAATAAAGGCTAGGGAGTAGTAACAAGTCAGAGTTGTTATTAGAGATGAGCTGGTTGGTGTAAAGCTTAACAATGATGCTGTGAACTTGCCCTAACGACAGGTCTATCGTTTGCCTTCCGCGTTAAGGGGCACGAGTGTCACACATTGAATGTGTGGAACTTAGGTGGTAACGCGAAATTAACTTCGTCCTATGATT
# RNA - T-box(Met)
>LJ1408(metQ) Score=71.4 Pos=-295 [Lactobacillus johnsonii NCC 533]
AACTTAAACATTTTGCTAGTTGAGTAAATTGGTAATGTTTTTTTAGAGAGTCTACGTGTGGTGGAAGTAGATAAAACAGCTAATTGAAGATGGACTAGAGATTAAAATGGTGGTAACGAATTTTAATAATAAGTTATCAACGGAGTTGCGATCGTTAAAAACGCAAGGTAATTCTTAATGAAAATTAGGAGCTACTTACTAAGGTCATTTATGTGAGTAAATGGCAAATTAAAGGTGGTAACGCGAGCACTCGTCCTTTTA
>LJ0632(metE2) Score=93.3 Pos=-459 [Lactobacillus johnsonii NCC 533]
TTAAAGCTTAGAAAAGATGAGTAATTACTTAAAGCATCCCCCAGAGAGTCGGATTAGGTGCAAGCCGATGTTGCTGACGTAATGAAGATGGTCTTGGAGCTAAATTAAAGTGCAAGCTAATTTAAGTAAGCAGTTTACGATTGACGTTCGTTATCATGTCCGAGTCTTCCAAATTTTGGAGTACTCAGTGAGGAATTAATTGTAAGATTAATTTGAATGCAGGGTGGTAACACGCTATTAAGCGTCCCTAGTGT
# RNA - T-box(Phe)
>LJ1625(pheS) Score=101.5 Pos=-245 [Lactobacillus johnsonii NCC 533]
ATTAAATGCGATGATTAAGATTAGTAGTGTGGATAGCTTTTTAGAGAGAGTTTTACTGGTGGAAGAAACTTAAGTTAGAAGCATGAATTTCATCTTAGGAGCAGAATCTAATCAATTCCGGTATTTCACCGTTATTCGAAAAGAGTGTGAACACGCACTTTATTTGTGCTAGTTCAAACTAGGGTGGTACCGCGAAGCTTCGTCCCTTTT
# RNA - T-box(Ser)
>LJ0676(serS) Score=69.4 Pos=-249 [Lactobacillus johnsonii NCC 533]
GCATGATATAATGCAAATAAACATGAAATCCTAAGACTAGTTTCAGAGAGCTCATGGTTGGTGTGAATGAGTAAAAAAGTCGTTTCCAGATTTCGAATGTGGGTAGGTAATTCTACACGGTTAGCACCGTTATCGCTTTTTGAGTGTGGTATTTTTTAACCAAATGTGGGTGGTACCGCGAACCGTGTAAGTCGATTCGTCCCCGTG
# RNA - T-box(Thr)
>LJ1645(thrS) Score=40.3 Pos=-238 [Lactobacillus johnsonii NCC 533]
AAAGTCAATGAAAGACATGATTTTCTTCAATTCAGAGACAGGAGCCTAGTTCTGGAAGCTCCTGATTAGAAGAAAACCCCAATTTCATTCCTGAAATTTTTTATATTTGGTTAGGTACCATTAACGACCTTTAGAGGAATTAATTTTGTAATTAATTCGAATTTCGGGTGGAACCACGTATTTTAACGTCCCAGCA
# RNA - T-box(Tyr)
>LJ0175(tyrS) Score=50.1 Pos=-206 [Lactobacillus johnsonii NCC 533]
CATAGGTAATAATAGTAGCAACTTAATTCAGTGTTCAGAGAACTAGCGGTTGGTGTGAGCTAGGCAGGTTAAGTGAGCGAAGTACATGGTGGGGTAGTTTCCGTATCAACTATATTTAAGGCGCATTAGGCGTAAACGTGGGTGGTACCACGGCTAATAAAGTAATTTAGTCGTCCCTAGATT
>LJ1701(tyrT) Score=59.6 Pos=-223 [Lactobacillus johnsonii NCC 533]
TAATTATCGTCACAGTAGTGCTTATGTTAAGCGTCAGAGAGCTGGTGGTGAAGTGCGAACCAGTCAGGCATAAGTTACGAATTACAACGATTCATCTTTATTCGGCCACAATCAGTGCCGTTACCACCTGATTAGAGTGCTGCAATCTGCAGTAAATAGGTGGTACCACGGTAATGCGTCCTGTTGAT
# RNA - T-box(Val)
>LJ0958(valS) Score=89 Pos=-250 [Lactobacillus johnsonii NCC 533]
ACAAAGCAAGAATCAAGAGGAGTAATTTCGCATTACAGAGAAAAGTCAATATGCTGAGAGACTTAAAGAATATTACTAGTAGCTTGATTAGCTGATTAATTGAATTTTTTAGTAGGTTAATCCGGACACTTCAGCGCCGTTATCGCTTATAAGAGAGGTATAGGTTCTATATCTAATCGTAGGTGGTACCGCGGAAAAATTTCGTCCTAGACAA
# TF - CopR: LJ1835
>LJ1835(copR) Score=5.4 Pos=-61 [Lactobacillus johnsonii NCC 533]
TTGTTGACAAGTGTAAACTA
>LJ1835(copR) Score=6.3 Pos=-33 [Lactobacillus johnsonii NCC 533]
ATGATTACATTTGTAAACGA
# TF - ScrR: LJ0517
>LJ0518(scrB) Score=5.9 Pos=-164 [Lactobacillus johnsonii NCC 533]
TATGTCAAGCGCTTATCATA
>LJ0518(scrB) Score=5.3 Pos=-87 [Lactobacillus johnsonii NCC 533]
ACTGTTATTCGTTTGACATA
>LJ0519(scrA) Score=6.1 Pos=-91 [Lactobacillus johnsonii NCC 533]
TATGATAAGCGCTTGACATA
>LJ0519(scrA) Score=5.7 Pos=-168 [Lactobacillus johnsonii NCC 533]
TATGTCAAACGAATAACAGT
# TF - MurR: LJ1817
>LJ1820(murP) Score=5.7 Pos=-36 [Lactobacillus johnsonii NCC 533]
ATGAAACATTTTTACAT
# TF - CggR: LJ0871
>LJ0871(cggR) Score=6.1 Pos=1 [Lactobacillus johnsonii NCC 533]
TGGACTCGGATTTAACCTTGTTGCAAAGCTTAGTTCC
# TF - TreR: LJ0759
>LJ0760(treP) Score=6.1 Pos=-75 [Lactobacillus johnsonii NCC 533]
CAACTTGTACAGACAAGTAT
>LJ0759(treR) Score=5.9 Pos=39 [Lactobacillus johnsonii NCC 533]
ATACTTGTCTGTACAAGTTG
>LJ0760(treP) Score=5.2 Pos=-164 [Lactobacillus johnsonii NCC 533]
ACACTTGATTAGACAAGTAA
# TF - YybA: LJ0661
>LJ0661(yybA) Score=7.8 Pos=-67 [Lactobacillus johnsonii NCC 533]
TTATTGTCGCATTTGCAACAATAA
# TF - HrcA: LJ1481
>LJ1481(hrcA) Score=6.4 Pos=-91 [Lactobacillus johnsonii NCC 533]
TTAGCACTCTACTTGAACAATTGCTAA
>LJ0815(clpL) Score=7.6 Pos=-70 [Lactobacillus johnsonii NCC 533]
TTAGCACTCATATATCAAGAGTGCTAA
>LJ0869(clpP) Score=6.9 Pos=-49 [Lactobacillus johnsonii NCC 533]
TTAGCACTGTACTTATTAGAGTGCTAA
>LJ0181(hsp) Score=5.9 Pos=-78 [Lactobacillus johnsonii NCC 533]
TTAGCACCGTTCTAATTAGTGTGCTAA
>LJ1775(clpC) Score=6.7 Pos=-58 [Lactobacillus johnsonii NCC 533]
TTAGCACTTATAACTTATGAGTGCTAA
>LJ0460(groS) Score=7 Pos=-70 [Lactobacillus johnsonii NCC 533]
TTAGCACTTATAATATATGAGTGCTAA
>LJ0460(groS) Score=6.9 Pos=-155 [Lactobacillus johnsonii NCC 533]
TTAGCACTCTGATGATAAAAGTGCTAA
>LJ1481(hrcA) Score=6.3 Pos=-43 [Lactobacillus johnsonii NCC 533]
TTAGCACAGAAGAAAGAAGAGTGCTAA
# TF - NrdR: LJ1648
>LJ0137(nrdD) Score=4.6 Pos=-63 [Lactobacillus johnsonii NCC 533]
CTACAATATCATGTAG
>LJ1824(dgk1) Score=4.5 Pos=-56 [Lactobacillus johnsonii NCC 533]
CTACCAGATATTGAAT
>LJ0643(pnuN) Score=5.7 Pos=-46 [Lactobacillus johnsonii NCC 533]
GCACAATATATTGTGT
>LJ1824(dgk1) Score=5.3 Pos=-26 [Lactobacillus johnsonii NCC 533]
AAACTATATATTGTAG
# TF - LacR: LJ0856
>LJ0856(lacR) Score=4.5 Pos=-152 [Lactobacillus johnsonii NCC 533]
ATAATTTACTCAAAAAT
>LJ0857(lacS) Score=5.5 Pos=-112 [Lactobacillus johnsonii NCC 533]
TATATTTAGTAAATTAT
# TF - NigR: LJ0744
>LJ0739(nigB) Score=5 Pos=-35 [Lactobacillus johnsonii NCC 533]
TATTTAAAACGTTTAGATTT
>LJ0739(nigB) Score=6.9 Pos=-101 [Lactobacillus johnsonii NCC 533]
AACTTAAAACGTTTCAAGTT
>LJ0739(nigB) Score=6.9 Pos=-101 [Lactobacillus johnsonii NCC 533]
AACTTAAAACGTTTCAAGTT
# TF - MdxR: LJ0210
>LJ0213(malK) Score=6.1 Pos=-100 [Lactobacillus johnsonii NCC 533]
TTTTGATACCGGTAACATTA
>LJ0211(malL) Score=5.5 Pos=-81 [Lactobacillus johnsonii NCC 533]
TTTTGATACCGGTAACAGAT
# TF - LJ1265: LJ1265
>LJ1265(LJ1265) Score=6.6 Pos=-108 [Lactobacillus johnsonii NCC 533]
TCTTGTAAATGCTTACAAAA
>LJ1266(LJ1266) Score=6.6 Pos=-45 [Lactobacillus johnsonii NCC 533]
TTTTGTAAGCATTTACAAGA
# TF - LBA1472: LJ1260
>LJ1260(LBA1472) Score=6.9 Pos=-118 [Lactobacillus johnsonii NCC 533]
ATGTAACCGGTTACAT
>LJ1259(LBA1471) Score=6.9 Pos=-66 [Lactobacillus johnsonii NCC 533]
ATGTAACCGGTTACAT
# TF - TagR: LJ0144
>LJ0144(tagR) Score=4.7 Pos=-28 [Lactobacillus johnsonii NCC 533]
GGTAAAGTTTTACA
>LJ0145(tagK) Score=4.7 Pos=-107 [Lactobacillus johnsonii NCC 533]
TGTAAAACTTTACC
# TF - FruR: LJ0570
>LJ0570(fruR) Score=5.3 Pos=-95 [Lactobacillus johnsonii NCC 533]
TGACTAATATTGAATGAATA
>LJ0570(fruR) Score=6.2 Pos=-85 [Lactobacillus johnsonii NCC 533]
TGAATGAATATGAATGATTT
# TF - AgaR2: LJ0116
>LJ0116(agaR2) Score=5.8 Pos=-40 [Lactobacillus johnsonii NCC 533]
AGGTGGTACTAACCAGTT
>LJ0119(gadV) Score=5.8 Pos=-97 [Lactobacillus johnsonii NCC 533]
AAGTGGTTGCAACCAGTT
# TF - LexA: LJ1508
>LJ0863(uvrB) Score=5 Pos=-86 [Lactobacillus johnsonii NCC 533]
GCGAAAATACGTTCGC
>LJ1544(LJ1544) Score=4.9 Pos=-64 [Lactobacillus johnsonii NCC 533]
AAAAACATTTGTTCGT
>LJ1544(LJ1544) Score=4.4 Pos=-36 [Lactobacillus johnsonii NCC 533]
GCAAACACAAGTTCGG
>LJ1177(xerC) Score=4.7 Pos=-28 [Lactobacillus johnsonii NCC 533]
ACAAACCTACGTTCGA
>LJ1508(lexA) Score=4.1 Pos=-71 [Lactobacillus johnsonii NCC 533]
AAGAACGCCTGTTTGC
# TF - CzcR1: LJ0376
>LJ0377(czcD) Score=6.3 Pos=-35 [Lactobacillus johnsonii NCC 533]
GTATACCAAATTCGATATAT
>LJ0377(czcD) Score=6.1 Pos=-72 [Lactobacillus johnsonii NCC 533]
ATATATCAAAAATGGAATAT
>LJ0376(czcR1) Score=6.1 Pos=-40 [Lactobacillus johnsonii NCC 533]
ATATTCCATTTTTGATATAT
>LJ0376(czcR1) Score=6.3 Pos=-77 [Lactobacillus johnsonii NCC 533]
ATATATCGAATTTGGTATAC
# TF - FlpA: LJ1693
>LJ1696(cadA) Score=5.2 Pos=-75 [Lactobacillus johnsonii NCC 533]
ATCTTGATAATAGTCAAGTC
>LJ1695(copZ) Score=6 Pos=-82 [Lactobacillus johnsonii NCC 533]
AAATTGACGATCATCAAGTT
# TF - YxeR: LJ0539
>LJ0539(yxeR) Score=5 Pos=-31 [Lactobacillus johnsonii NCC 533]
AAAGTGACACAGTGTCACAAG
>LJ0539(yxeR) Score=4.2 Pos=-75 [Lactobacillus johnsonii NCC 533]
ATGTTGACACGGTGTCACTTT
# TF - LBA1638: LJ0666
>LJ0666(LBA1638) Score=5.9 Pos=-65 [Lactobacillus johnsonii NCC 533]
TGTAGATTGTTTTCTACA
# RNA - SMK_box_riboswitch
>LJ0677(metK) Score=63.1 Pos=-67 [Lactobacillus johnsonii NCC 533]
TCGGTTAAGGTCCCGAAAGGATTCGTTTTTAACGAAGATGCCTTGTAACCGAAAGATGGGGGACTCTATGAAAAA
# TF - YhcF: LJ1302
>LJ1302(yhcF) Score=6.4 Pos=-42 [Lactobacillus johnsonii NCC 533]
AGTGTAATAGATAAACCGTACACT
>LJ0604(ytsC) Score=5.3 Pos=-45 [Lactobacillus johnsonii NCC 533]
AGTGTAACAGGTACGTAATACACT