# TF - NagR: PEPE_1527
>PEPE_1528(nagA) Score=5.6 Pos=-57 [Pediococcus pentosaceus ATCC 25745]
TTTTTGGTCTATACCGATAT
>PEPE_0478(glmS) Score=5 Pos=-124 [Pediococcus pentosaceus ATCC 25745]
CATTTGATATATACCGATTT
>PEPE_0478(glmS) Score=4 Pos=-58 [Pediococcus pentosaceus ATCC 25745]
ATCGTTCTATATACCAATTT
>PEPE_0335(nagB) Score=5.4 Pos=-60 [Pediococcus pentosaceus ATCC 25745]
ATTTTGGTTTAGACCATTTT
>PEPE_0335(nagB) Score=5.6 Pos=-39 [Pediococcus pentosaceus ATCC 25745]
TAATTGGACTATACCAAAAA
>PEPE_1816(nagE) Score=5.8 Pos=-144 [Pediococcus pentosaceus ATCC 25745]
TAATAGGTATATACCAATTT
>PEPE_1816(nagE) Score=4.8 Pos=-100 [Pediococcus pentosaceus ATCC 25745]
AAAGCGGATTATACCAATAA
>PEPE_0023(celB2) Score=5.6 Pos=-165 [Pediococcus pentosaceus ATCC 25745]
TAATTGGTATATTCCATTAT
# TF - CcpA: PEPE_1250
>PEPE_0189(ptcA) Score=4.5 Pos=-83 [Pediococcus pentosaceus ATCC 25745]
TTGGAAACGCTTTATT
>PEPE_1699(rbsK) Score=4.9 Pos=-65 [Pediococcus pentosaceus ATCC 25745]
ATTAAAACGTTTTCAT
>PEPE_1623(glpK) Score=5 Pos=-51 [Pediococcus pentosaceus ATCC 25745]
TAGAAAGCGCTTTCTT
>PEPE_1623(glpK) Score=4.2 Pos=-84 [Pediococcus pentosaceus ATCC 25745]
TTAAAAACGATTTATA
>PEPE_0281(pts20B) Score=4.5 Pos=-58 [Pediococcus pentosaceus ATCC 25745]
TCGTAAGCGGTTTCAT
>PEPE_1763(lacX) Score=4.3 Pos=-76 [Pediococcus pentosaceus ATCC 25745]
AAGAAAGCCTTTACAT
>PEPE_1776(bglB) Score=4.8 Pos=-34 [Pediococcus pentosaceus ATCC 25745]
ATGAAAGCGAATTCAA
>PEPE_1700(rbsR) Score=4.2 Pos=-140 [Pediococcus pentosaceus ATCC 25745]
ATATAAGCGTTTAATT
>PEPE_1250(ccpA) Score=4.6 Pos=-69 [Pediococcus pentosaceus ATCC 25745]
TTGATAACGTATTCAT
>PEPE_1662(dhaK) Score=4.8 Pos=-63 [Pediococcus pentosaceus ATCC 25745]
TTGTAATCGCTTTCTA
>PEPE_0144(fbp) Score=4.9 Pos=-75 [Pediococcus pentosaceus ATCC 25745]
TTGTAAGCGGTTTTAT
>PEPE_1631(arcB) Score=5 Pos=-119 [Pediococcus pentosaceus ATCC 25745]
ATGAAAACGTTTTAAA
>PEPE_0162(araE) Score=4.9 Pos=-48 [Pediococcus pentosaceus ATCC 25745]
ATGAATACGCTTTCAA
>PEPE_1518(manL) Score=4.5 Pos=-146 [Pediococcus pentosaceus ATCC 25745]
TTGAAAGCGTTTTTTG
>PEPE_1166(fruR) Score=4.3 Pos=-6 [Pediococcus pentosaceus ATCC 25745]
ATGAAAGTGCTTACAG
>PEPE_1619(hcaD) Score=4.7 Pos=-81 [Pediococcus pentosaceus ATCC 25745]
TTATAAGCGTTTTAAT
>PEPE_1619(hcaD) Score=4.1 Pos=-66 [Pediococcus pentosaceus ATCC 25745]
TTGTAAGCGGTTCACA
>PEPE_1631(arcB) Score=4.5 Pos=-55 [Pediococcus pentosaceus ATCC 25745]
GTGAAAGCGCTTGCTA
>PEPE_0697(lrgA) Score=4.8 Pos=-88 [Pediococcus pentosaceus ATCC 25745]
GTGAAAGCGCTAACAT
>PEPE_1252(spxB) Score=4.6 Pos=-38 [Pediococcus pentosaceus ATCC 25745]
ACGAAAACGTTTTCAA
>PEPE_1334(pmi) Score=4.3 Pos=-21 [Pediococcus pentosaceus ATCC 25745]
ATGAAAGGGGTTTTAT
>PEPE_1632(ycbB) Score=4.9 Pos=-167 [Pediococcus pentosaceus ATCC 25745]
TTTAAAACGTTTTCAT
>PEPE_1632(ycbB) Score=4.3 Pos=-231 [Pediococcus pentosaceus ATCC 25745]
TAGCAAGCGCTTTCAC
>PEPE_0106(bglA) Score=4.5 Pos=-51 [Pediococcus pentosaceus ATCC 25745]
ATGAAAAGGCTTTCTA
>PEPE_0511(rafR) Score=4.7 Pos=-204 [Pediococcus pentosaceus ATCC 25745]
TTGTATCCGTTTTCAT
>PEPE_0968(malT) Score=4.4 Pos=-39 [Pediococcus pentosaceus ATCC 25745]
ATGAAAGCGCTTCATA
>PEPE_1777(lhv_0924) Score=4.7 Pos=-141 [Pediococcus pentosaceus ATCC 25745]
TTGAATTCGCTTTCAT
>PEPE_1093(pfk) Score=4 Pos=-116 [Pediococcus pentosaceus ATCC 25745]
AATAAAGCACTTACAT
>PEPE_0276(dhaT) Score=4 Pos=-15 [Pediococcus pentosaceus ATCC 25745]
AAGAAGGCGTTTAAAA
>PEPE_0276(dhaT) Score=4.7 Pos=-71 [Pediococcus pentosaceus ATCC 25745]
TTGTAAACGGATACAT
>PEPE_0276(dhaT) Score=4.1 Pos=-104 [Pediococcus pentosaceus ATCC 25745]
ATAAAAACGTTTAACT
>PEPE_0182(adhX) Score=4.8 Pos=-75 [Pediococcus pentosaceus ATCC 25745]
TTGCAAACGCTTTCTT
>PEPE_1821(gabD) Score=4.8 Pos=-55 [Pediococcus pentosaceus ATCC 25745]
ATGAAAGCGTATTCTT
>PEPE_1360(gntP) Score=4.7 Pos=-35 [Pediococcus pentosaceus ATCC 25745]
AAGAAAGCGGTTACTT
>PEPE_0112(yghZ) Score=4.7 Pos=-45 [Pediococcus pentosaceus ATCC 25745]
ATGAAAGCGGTATCTT
>PEPE_0609(ptsH) Score=4 Pos=-127 [Pediococcus pentosaceus ATCC 25745]
ATGTAAGGGCTTGCTT
>PEPE_0519(scrB) Score=4.6 Pos=-59 [Pediococcus pentosaceus ATCC 25745]
GTGTAAGCGGTTTTAT
>PEPE_0519(scrB) Score=4.3 Pos=-213 [Pediococcus pentosaceus ATCC 25745]
ATGCAAGCGCTTTACA
>PEPE_1251(pepQ) Score=4.6 Pos=-109 [Pediococcus pentosaceus ATCC 25745]
ATGAATACGTTATCAA
>PEPE_0479(lp_0827) Score=5.1 Pos=-181 [Pediococcus pentosaceus ATCC 25745]
TTGTAAGCGTTATCAT
>PEPE_1774(lplA1) Score=4 Pos=-107 [Pediococcus pentosaceus ATCC 25745]
TTTAAAACATTTTAAA
>PEPE_1774(lplA1) Score=4.8 Pos=-40 [Pediococcus pentosaceus ATCC 25745]
TAGAAAGCGCTTCCAT
>PEPE_1805(treR) Score=4.6 Pos=-34 [Pediococcus pentosaceus ATCC 25745]
ATGTAAGCGTTTCTAA
>PEPE_1805(treR) Score=4.7 Pos=-177 [Pediococcus pentosaceus ATCC 25745]
TTGTAAGCGCTTGCTA
>PEPE_1804(treP) Score=4.7 Pos=-56 [Pediococcus pentosaceus ATCC 25745]
TAGCAAGCGCTTACAA
>PEPE_1804(treP) Score=4.6 Pos=-199 [Pediococcus pentosaceus ATCC 25745]
TTAGAAACGCTTACAT
>PEPE_0205(lacL) Score=4.8 Pos=-41 [Pediococcus pentosaceus ATCC 25745]
TTGTAAGCGTTTTATA
>PEPE_0518(scrA) Score=4.1 Pos=-58 [Pediococcus pentosaceus ATCC 25745]
TGTAAAGCGCTTGCAT
>PEPE_0518(scrA) Score=4 Pos=-157 [Pediococcus pentosaceus ATCC 25745]
ATGTCAGCGTTTCAAA
>PEPE_0518(scrA) Score=4.3 Pos=-212 [Pediococcus pentosaceus ATCC 25745]
ATAAAACCGCTTACAC
>PEPE_0185(xynT) Score=4.2 Pos=-150 [Pediococcus pentosaceus ATCC 25745]
TTGTAAGCGAATACAC
>PEPE_0185(xynT) Score=4.4 Pos=-129 [Pediococcus pentosaceus ATCC 25745]
ATGTCAACGCTTTTAT
>PEPE_0185(xynT) Score=4.7 Pos=-107 [Pediococcus pentosaceus ATCC 25745]
TTGAAAACGCTTTACA
>PEPE_0446 Score=4.1 Pos=-77 [Pediococcus pentosaceus ATCC 25745]
AAAAAAACGCTTTCTG
>PEPE_0512(lacS) Score=4.7 Pos=-46 [Pediococcus pentosaceus ATCC 25745]
ATGAAAACGGATACAA
>PEPE_0412(guaA) Score=4.3 Pos=-103 [Pediococcus pentosaceus ATCC 25745]
TTGATAGCCTTTTCAT
# TF - PurR: PEPE_0292
>PEPE_0303(pbuG) Score=5.2 Pos=-122 [Pediococcus pentosaceus ATCC 25745]
AAATACGAACTAT
>PEPE_0381(pbuO) Score=5.1 Pos=-88 [Pediococcus pentosaceus ATCC 25745]
ATAAACGAACATT
>PEPE_0292(purR) Score=5.2 Pos=-103 [Pediococcus pentosaceus ATCC 25745]
AAATCCGAACATT
>PEPE_1247(purA) Score=5.1 Pos=-117 [Pediococcus pentosaceus ATCC 25745]
AAACACGAACCAT
>PEPE_0595(guaC) Score=4.6 Pos=-99 [Pediococcus pentosaceus ATCC 25745]
GAAAACGAACTTT
>PEPE_1467(purE) Score=5.4 Pos=-123 [Pediococcus pentosaceus ATCC 25745]
AAAAACGAACTTT
# TF - YhcF: PEPE_0054
>PEPE_0054(yhcF) Score=6.5 Pos=-37 [Pediococcus pentosaceus ATCC 25745]
AGTGTATTAGAAAACTAGTACACA
# TF - AraR: PEPE_0157
>PEPE_0162(araE) Score=4.5 Pos=-121 [Pediococcus pentosaceus ATCC 25745]
AAATTCATCCTAACAAATTT
>PEPE_0162(araE) Score=6.1 Pos=-89 [Pediococcus pentosaceus ATCC 25745]
TGACTTGTCCGTATAAATAT
# RNA - L10_leader
>PEPE_1491(rplJ) Score=60.9 Pos=-153 [Pediococcus pentosaceus ATCC 25745]
ATTATAACTGAATAATTTACCTAAGACTCAGGTGGCCATGTTTGGCCTTAATATATTGCCTGCCGAGGAACGTATGAAACTATTCGTGTCTCAGAGTCTTTCTGGGGTACGAATTTTTTTATGGTTCA
# RNA - TPP
>PEPE_0333(thiX) Score=55 Pos=-465 [Pediococcus pentosaceus ATCC 25745]
GATTTTGTAACAGGGGTGCTGGGCTTTACCTGGCTGAGATTAAAACTAAATGGTTTTTGACCCTCGAACCTGATATGGATAATGCCAGCGCAGGAAGACTCAATTGTAATATT
>PEPE_0558(thiM) Score=66.6 Pos=-185 [Pediococcus pentosaceus ATCC 25745]
ATCTGCACTAGGGGTGTTCTTAGAAGAACTGAGATACGCTTGTTCAGCGTGATCCCTTTGAACCTGTAAGTTAGTACTTGCGAAGGAAAGTGTTTAATTGTTGAAAC
>PEPE_0334 Score=55 Pos=-206 [Pediococcus pentosaceus ATCC 25745]
GATTTTGTAACAGGGGTGCTGGGCTTTACCTGGCTGAGATTAAAACTAAATGGTTTTTGACCCTCGAACCTGATATGGATAATGCCAGCGCAGGAAGACTCAATTGTAATATT
# RNA - FMN
>PEPE_1593(ribU) Score=94.3 Pos=-244 [Pediococcus pentosaceus ATCC 25745]
GGTTCATCTTCAAGGGGCAGGGTGCGATTCCCGACCGGTGGTAAAGTCCATGAGCTGTCATTCGTGATGGCTGATTCGGTGAAATTCCGAAACCGATAGTTAAAGTCTAGATAAAGGAAGATTGAA
>PEPE_1820(ribD) Score=115.4 Pos=-249 [Pediococcus pentosaceus ATCC 25745]
TAGATTTCTTCGGGGCAGGGTGTAATTCCCGACCGACGGTAACAACCAAGGGTTGAAGTCCGTGACCCGCGAGTAGCGGTGGACCTAGTGAGAGTCTAGGACCGACAGTATAGTCTGGATGGGAGAAGAAACGT
# RNA - PyrR
>PEPE_1571(pyrG) Score=26.3 Pos=-158 [Pediococcus pentosaceus ATCC 25745]
GAGATCCTTTTGAGGATTTTTCAGACAATGAACGGTAATACCCCCTATTCTCAGAATAGGGGGTATTTTTAT
>PEPE_1124(pyrP) Score=45.8 Pos=-145 [Pediococcus pentosaceus ATCC 25745]
AGAAACCTTAATTTGGTCCTGTGAGGCCAAAAGGCTCAATTTGTTCGGTAGAACCTCGCACTTAACGGGGAATCATAGAATTTACTGAAGCCTCTTGGATCACATCGATCTAAGAGGCTTTTTCT
>PEPE_1675(pyrF) Score=27.5 Pos=-96 [Pediococcus pentosaceus ATCC 25745]
GAGTCGCTTTAAATCGATCCAGAGAGATTGATAAGCTAACGAATACACCGCAAACTAGGTGCTGGTTAGCATACCTAGACCTTGCGGTGTTTTTTGA
# RNA - L13_leader
>PEPE_1386(rplM) Score=47.7 Pos=-82 [Pediococcus pentosaceus ATCC 25745]
TGGTATTGTTTACCTCCACAAAATAAGCCCCGGAAACTTATTAAAGTTGAGTTAAACAAAAC
# RNA - L19_leader
>PEPE_0850(rplS) Score=20.5 Pos=-57 [Pediococcus pentosaceus ATCC 25745]
CAATGTTCCGCTGGCTCCGGGTGAGTTAATGAAGATTGGCG
# RNA - L20_leader
>PEPE_0699(infC) Score=70.7 Pos=-168 [Pediococcus pentosaceus ATCC 25745]
AGAAAAAGCAGAAGCCACCGCTTCTCGCCTTGTAACTTAAGTTGCTGGGCTAAAGAACGTTGAATGGATACTAATTAATTATCCAAACAAAGCGGGTGGCGTATGCCATCCGCTTTTCTGCATTCTCGC
# RNA - L21_leader
>PEPE_0811(rplU) Score=57.9 Pos=-79 [Pediococcus pentosaceus ATCC 25745]
CCACGCTACAACCGCACAAAGTGAGTTTTAAAGCATAGCACTTACTTTGGCGAGTCTTAGAATTAAGGA
# RNA - Lysine
>PEPE_0137(lysC) Score=109.4 Pos=-295 [Pediococcus pentosaceus ATCC 25745]
ATTAAAAAAGAGGTTGCGGAGATTAAAAGTACCTGAGGATAGAATGAAGGATTCGATATGCCCCAGCGAAAGGATGATCCGCCGAAATGAACATTGACCTTTCTCAATGTTTGTTGGGTCTTGAGATAACATCTCAAGGACTGTCGCTATCATGACTGATAGCGGGGTGCTTTTCAAATCAG
>PEPE_1438(lysP) Score=102.8 Pos=-292 [Pediococcus pentosaceus ATCC 25745]
CATCGAAAGAAGAGGTTGCCTCAATTATTAGTAGATCCGGCTAGATGACTAAGCATCAATGACCCGAATTGAAAGGAAAAGAGGCCGAAATGACTACATGCTTATTCATGTACGATTTGGGCTCTGGTTGAATAAGCCAGAGACTGTCGCAATGAAAATTGCGGAGCGCTATCTACGAT
# RNA - PreQ1
>PEPE_0901(queT) Score=17.4 Pos=-54 [Pediococcus pentosaceus ATCC 25745]
ACACGGTGGTTCGAAATATCCTCCCGCCTCAAACTAAAACTAGGAGAGTTA
# RNA - Purine
>PEPE_1835(pbuX) Score=57.9 Pos=-195 [Pediococcus pentosaceus ATCC 25745]
CAATCAAATAAAACTTAGCCTATATAATGTCTTAATCTGGTTGACAGTTTCTACCCAACGCCGTAAATGTTGGACTATAGGAAAACTAACTCTTATGTA
# RNA - S15
>PEPE_1146(rpsO) Score=25.6 Pos=-54 [Pediococcus pentosaceus ATCC 25745]
ATCTGCCGACGATTTACTCAGTCTTGGGGAATTTAAAGAATGAGGTGTTTTAACATGGCAATTTCACAAGAAAAGAAAAACGAAATTATTGCAAAGTATGCTCGTCACGAA
# TF - Rex: PEPE_1470
>PEPE_0555 Score=5.4 Pos=-109 [Pediococcus pentosaceus ATCC 25745]
TTATGAAAATATTCACAA
>PEPE_1525(pncB) Score=4.4 Pos=-68 [Pediococcus pentosaceus ATCC 25745]
ATGATAAAATTAAAACAA
>PEPE_1047 Score=5.3 Pos=-2 [Pediococcus pentosaceus ATCC 25745]
TTATGAAAAAAATAACAA
# RNA - preQ1-II
>PEPE_1764(queT) Score=15 Pos=-112 [Pediococcus pentosaceus ATCC 25745]
ATGATAGAATTCTGTTAGAAATTTTGTTCCACCTATGACACTTCTCCCATTCTTTGGGTTCCTTTGGTCATAGTAAAATTAGTGACGTTTACGTTATAAAGGAGAATTTAATATG
# RNA - yybP-ykoY
>PEPE_1523(atcL) Score=54.6 Pos=-173 [Pediococcus pentosaceus ATCC 25745]
AATTGTAGACATGAGGGAGTAACTTGCAGACTATCTGCGATAATATCACCAACAAGAATAAATCTGGTATTATCTTAATTTAGTGAGACTCATGTGTGTGGG
# RNA - T-box(Ala)
>PEPE_1263(alaS) Score=62.8 Pos=-228 [Pediococcus pentosaceus ATCC 25745]
AAAATCATTTGAGATATGTAGGAGCTAACCCCTTAGTGCAAGAGACATTCTGGCTGGTGTGAAGGGTGAAGGGAAGTTTCTATGCTACTCAAGTTAATGAATCGTTTTCTCAGCGTTAATGAGACTTAAGAGGTATACGATTAAACATCGTTGCAAGTAAAGTGGTACCGCGCAGTCGCGTCTTTATT
# RNA - T-box(Asn)
>PEPE_1469(asnA) Score=88.1 Pos=-309 [Pediococcus pentosaceus ATCC 25745]
TGAAGACAAAAAGAGAGACGAGTAGAATTTATCATTCTGTCAGTGAGTTGGGATAAGTGGGAACCCAATCAGACCCTGATACTTTTGAATAACACTTTCTTAGTTTCTAACTGAAATAGCATAGGCTAAAGTAGGCTTAGACGTGACCGGTACGTTACCAATCGGAGGAGTATGTTTGTACTCTTATTGAGGTGGCTTATTAAATATAGGCAACTTGGGTGGTACCGCGGAAAGTCTTTCGTCCCTTGTCA
>PEPE_0547(asnS2) Score=103.3 Pos=-302 [Pediococcus pentosaceus ATCC 25745]
TATCAACCGTAAGAAGAACGAGTATTTAAAGCCCATAACTTAAAGCGAATTGAGGATAGTGCGAGCTCAAAAAGTTATTCTTTTAAGAAAAACATCTTCTTTGTTTCTAAGCTGAAATCACAGTAGGCTTAGACGGGGCCGGCCCGTTACAGCTTGGAAAGCATTTCGATGCTTATTTTAAGATGTTTAATTTAATTAAACGAATTTTGGGTGGTACCGCGAAAGTCCTTCGTCCCTTCTGG
# RNA - T-box(Asp)
>PEPE_1116(hisS) Score=84.8 Pos=-223 [Pediococcus pentosaceus ATCC 25745]
ATATAAATCGATGAAAAGGACTATTAAATATTGACGACATGGCTAAGAGAGCTCGGTTGCTGGAAAAGAGTGCATGCGTCATATTGAAGACACCTTGGAGATTTGGTCGGCACCCATTATATATGCCGTAGAGTACAAATCTAAGGTGGTACCGCGTCAAGACGCCCTTGTT
# RNA - T-box(Arg)
>PEPE_0669(argS) Score=71.3 Pos=-214 [Pediococcus pentosaceus ATCC 25745]
ATTAGTAGGGTAGTAGTAGGCTTTAATCTTATCTAAGCGAGTCTGAGTTGGTGTGAGTCAGATATAAGGTAAAGTTGAAGGCGTGACCTTATGGATGCTAATTTAATAAATAAGTGGATTATTTAATCAATTAGAGTGGTACCGCGGGAAATCTCGTCTCTTACAT
# RNA - T-box(Gly)
>PEPE_1102(glyQ) Score=55.7 Pos=-228 [Pediococcus pentosaceus ATCC 25745]
ATAGAGGACAGTGAAGAACGAAGTAGGCCTTATAAGTTTTCAAAGCGAGATCAGAATGGTGGGAGCTGATTAAAACAAGTCTACAGGGCATTTGGAGTCCGTGTAAAACTAAGTTGCCAGCGATTGCTGGAAGTAGGGTGGAACCGCGACTCTTGTCGTCCCTACG
# RNA - T-box(Ile)
>PEPE_1179(ileS) Score=123.8 Pos=-262 [Pediococcus pentosaceus ATCC 25745]
GAATAAAACGTTAAAAAAGAAGAATCTTCAAAATGTAGCATCTTAGCGAGCTGACGACGGTGGGAGGTCAGTATGTAATTTGAAGGTTGATCACTTTTGAGTGCTAGATTGAAATTCAGTAAATCTAGTCGGTTGGCAACCGTTAAGTGCTACAAAGAGGAAGACCATTTAATGGTCTTTAAATTTGGGTGGTACCGCGAAGACTTCGTCCCTGTT
# RNA - T-box(Leu)
>PEPE_0645(leuS) Score=104.3 Pos=-265 [Pediococcus pentosaceus ATCC 25745]
AAATATTGTCGATAAAAGAAGTAGTAGTTGGGATGGATATTTTAAGAGACCGAATGGCTAGTGGAAATTCGGAATGACTTTCAACGAACTCGTCTTTAAAATTAACAATCTTGAACCTAAGTAGAGATTGTCGTTTTCCGCGTTAAGGTATTCAAGTGTGCATTTTGCAAAACATAGGTGGTACCGCGGAACTTTTCGTCCTAAGGAT
# RNA - T-box(Met)
>PEPE_0496(metE2) Score=80.2 Pos=-337 [Pediococcus pentosaceus ATCC 25745]
AATGAAAGCAATGAGAAGATGAGTAGTCTCAGAACGGTATTGAGAGAGTTCACATTTGATGAGAGTGAATTGCCGGGAATTGATGAATATGGTCTTTGAGCTGGGGGTTATTGAGCCGTTAGCAAAATAACCTGGTGAACGCACCTTATAGCGTAATAGTTCAATGAATCCTCATTGTTTATAAAACAATGGGATTGTCAGTTTTTTTGGACTTGATAAGTCACTTAGCGCAAGTTATGTGAAAATTAAGGTGGTAACACGGCAATATCGTCCTTATA
>PEPE_1311(metN) Score=96.2 Pos=-300 [Pediococcus pentosaceus ATCC 25745]
AACAAAGTATTAGAGAAAGATGAGTAAACAGATTTATCTACGCTTAGAGAGTTTCCGGTTGGTGGAAGGAAATCGAGGTAATCGTTGAAGATGGTCTTTCAATTTATTCAGCGGATTTGTGAGCATTTAGTTAGCAAATCATGGGAGCGCCCATTACAGCGCACGGGTTGATTGACCCGCAGAGTTCGTTGACCGTAAGGCAACGAAAAAACAAGGTGGTAACACGACAGACTTTCGTCCTTGAA
# RNA - T-box(Phe)
>PEPE_0721(pheS) Score=87.8 Pos=-207 [Pediococcus pentosaceus ATCC 25745]
AAAGCTCGAAGAGTAGTAGCTGATTTAAATTATCAGACAGAGAAGGAATCGTTAGGTTGAGAGATTCCGATGATGGTTTCAGTGAATTCGCTTCGATTTAAAAATGGGCAGGCCACCCGTATCTGGCTGACCAAGTGTGCATTGAGTTGCAAACAAGGGTGGTACCGCGTTAAAAAACGTCCCTTTCTA
# RNA - T-box(Ser)
>PEPE_1436(serS) Score=55.2 Pos=-236 [Pediococcus pentosaceus ATCC 25745]
AATAGAGAAATTAAAGGCGTTTAAAGTAGGTTTTTAGAGAGATCCGCATGGTGGAAAGGATTAGCCGAAACTCCGGCGCTAGTTAAAAGGTGGGTAATGCCACACGGTGATTCCGTTATCGTCGGATTGAGTGCACCGCTTATATAAGCAGGTGAACTTGGGTGGTACCGCGAAAAGAGTCTCTTCGTCCCAATG
# RNA - T-box(Thr)
>PEPE_0694(thrS) Score=55.7 Pos=-196 [Pediococcus pentosaceus ATCC 25745]
TAAAACTTCCCACTTGACTAGAGGCTGGGCGCAATCCCAGTTCGGTTGCCACCGTTATGGCTTTTAATCGAGTGGTAGATAGTTTTTTAACTGTCTACAATTAGGGTGGAACCGCGTGAATAATAAATGACAATCACGTCCCTGGTAT
# RNA - T-box(Trp)
>PEPE_0256(trpS) Score=63.8 Pos=-215 [Pediococcus pentosaceus ATCC 25745]
TTTAAAATGAAAGTAGTAGTTAACCACTAACAGAGAGAGACAGTTGTTGAGAAGTCTCATGGAAGGCGAAATGGATTGATGTTTAACAGGGCGAAATCCCTTATCTTTCACTAGAGCGGTGGCTTTATAATGGAGTCACAAGTTAGGTGGTACCGCGATTTTTCGTCCTATTATT
# RNA - T-box(Tyr)
>PEPE_1838(tyrT) Score=64.2 Pos=-262 [Pediococcus pentosaceus ATCC 25745]
CATTTTAACTTTCACATTAAGTAGTGCATAATCTGGGTGTCAGAAAGTCGGTGGTTGCTGCGAACCGATCAGGGTTATGTTGTCGAAATACCGTGGAATAGTTTAATTTAACGGAAAATAACTAGAACCGTTATCAATCTAGTGAGTGAAGAGGTCTTTTTGGGTTCTCTTAAGCTGGGTGGTACCACGGTCTCCATATCGTCCCTGTT
>PEPE_0235(tyrS) Score=100.8 Pos=-263 [Pediococcus pentosaceus ATCC 25745]
ACGAAGCTTTGAAGTAGCATAGTAGGTTATTAAGCAAGCAAACAGAAATCTGGTGGGGATGCGAATCAGACTTGTTAATGACGCGAATTACACTATGGAGCTTTCATTTAATGAACGGATCATCTCGTTATCGATGTTGAGCGGAGTATTGATACTCAATCAAGGTGGTAACGCGGAAAAATTCGTCCCTGATCT
# RNA - T-box(Val)
>PEPE_1291(valS) Score=90.4 Pos=-258 [Pediococcus pentosaceus ATCC 25745]
TCTGAAGGTTATGACTAAGAGGAGAGCTGCAAAACTTTTTTCAGAGAATAGACATTTTTGCTGAGAGTCTTAAAAAGTTGGAGTTCGGGTTGCTTATGAGCCAATTTTCTAGATTTAATTCTAGAAAATCGAACAAATTGTTCGTTATCAATGTTAAAGAGGGGCATAATACGCCCAATTTAGGTGGTACCGCGAAGCATCTTCGTCCTATGA
# TF - NiaR: PEPE_0214
>PEPE_0213(niaP) Score=5.6 Pos=-112 [Pediococcus pentosaceus ATCC 25745]
TACAAGTGTCAAGACATTAATT
>PEPE_0214(niaR) Score=5.6 Pos=-64 [Pediococcus pentosaceus ATCC 25745]
AATTAATGTCTTGACACTTGTA
# TF - XylR: PEPE_0186
>PEPE_0184(xylS) Score=5.1 Pos=-182 [Pediococcus pentosaceus ATCC 25745]
GTTTGTTAGTTCTATTTACAAAC
>PEPE_0185(xynT) Score=5.1 Pos=-66 [Pediococcus pentosaceus ATCC 25745]
GTTTGTAAATAGAACTAACAAAC
# TF - GlnR: PEPE_0738
>PEPE_1068(glnP) Score=5.8 Pos=-34 [Pediococcus pentosaceus ATCC 25745]
ATGTTAGGTTATCTAACAT
>PEPE_0738(glnR) Score=6.2 Pos=-81 [Pediococcus pentosaceus ATCC 25745]
ATGTTAGAAAATGTAACAT
# TF - CopR: PEPE_1646
>PEPE_1646(copR) Score=5.9 Pos=-35 [Pediococcus pentosaceus ATCC 25745]
AAGATTACATTTGTAAACAG
>PEPE_1646(copR) Score=6.1 Pos=-61 [Pediococcus pentosaceus ATCC 25745]
AAGTTTACAAATGTAGTCTA
# TF - ScrR: PEPE_0520
>PEPE_0519(scrB) Score=6 Pos=-171 [Pediococcus pentosaceus ATCC 25745]
TATGTCAAGCGTTTGATACA
>PEPE_0519(scrB) Score=6.4 Pos=-82 [Pediococcus pentosaceus ATCC 25745]
AATGTCAAACGATTGACATA
>PEPE_0518(scrA) Score=6.1 Pos=-104 [Pediococcus pentosaceus ATCC 25745]
TGTATCAAACGCTTGACATA
>PEPE_0518(scrA) Score=6.5 Pos=-193 [Pediococcus pentosaceus ATCC 25745]
TATGTCAATCGTTTGACATT
# TF - MalR: PEPE_0969
>PEPE_0968(malT) Score=6.1 Pos=-86 [Pediococcus pentosaceus ATCC 25745]
AAGTGCAAACGCTTGCACAA
# TF - MurR: PEPE_1041
>PEPE_1043(murQ) Score=5.7 Pos=-66 [Pediococcus pentosaceus ATCC 25745]
TTGAAATGTTATTTCTT
# TF - CggR: PEPE_0458
>PEPE_0458(cggR) Score=6 Pos=4 [Pediococcus pentosaceus ATCC 25745]
ATGATAATGAGATGGATTTATTAGAATCTGTTGTTCC
# TF - PadR: PEPE_0492
>PEPE_0491(padC) Score=6.4 Pos=7 [Pediococcus pentosaceus ATCC 25745]
AAACTTTTAAAACTTTAGATGACT
# TF - PerR: PEPE_0338
>PEPE_0043(pcl2) Score=5.7 Pos=-37 [Pediococcus pentosaceus ATCC 25745]
TTAAAATGATTCTAA
>PEPE_0502(cueO) Score=5.3 Pos=-73 [Pediococcus pentosaceus ATCC 25745]
TTAGATTAATTCTAA
# TF - RbsR: PEPE_1700
>PEPE_1699(rbsK) Score=5.6 Pos=-67 [Pediococcus pentosaceus ATCC 25745]
CTATTAAAACGTTTTCATAA
>PEPE_1699(rbsK) Score=5.3 Pos=-54 [Pediococcus pentosaceus ATCC 25745]
TTCATAAAACGTTTTAAACA
# TF - TreR: PEPE_1805
>PEPE_1805(treR) Score=5.7 Pos=-66 [Pediococcus pentosaceus ATCC 25745]
TACCTTGTATATACTAGTTA
>PEPE_1804(treP) Score=6.1 Pos=-95 [Pediococcus pentosaceus ATCC 25745]
CATCTTGTATATACAAGTTT
>PEPE_1805(treR) Score=6.2 Pos=-142 [Pediococcus pentosaceus ATCC 25745]
AAACTTGTATATACAAGATG
>PEPE_1804(treP) Score=5.8 Pos=-171 [Pediococcus pentosaceus ATCC 25745]
TAACTAGTATATACAAGGTA
# TF - ArgR: PEPE_0671, PEPE_0822
>PEPE_1137(artPQ) Score=5.2 Pos=-94 [Pediococcus pentosaceus ATCC 25745]
AATGTATAAAAATTCATA
# TF - GalR: PEPE_0201
>PEPE_0203(lacS2) Score=5.1 Pos=-108 [Pediococcus pentosaceus ATCC 25745]
ACTAATTTACTAAAATAAT
>PEPE_0203(lacS2) Score=5.6 Pos=-85 [Pediococcus pentosaceus ATCC 25745]
CAAATTTTACTAAAAAACA
>PEPE_0206(galK) Score=6.3 Pos=-33 [Pediococcus pentosaceus ATCC 25745]
AAAATTTTAGTAAAATTAT
>PEPE_0202(galM) Score=5.4 Pos=-89 [Pediococcus pentosaceus ATCC 25745]
TTATTTTAACTAAAATATT
>PEPE_0206(galK) Score=5.2 Pos=-193 [Pediococcus pentosaceus ATCC 25745]
AAAATTTAACCAAAATTAA
>PEPE_0201(galR) Score=5.2 Pos=-177 [Pediococcus pentosaceus ATCC 25745]
CAAAATTTTGTAAAAATAT
>PEPE_0205(lacL) Score=6.2 Pos=-266 [Pediococcus pentosaceus ATCC 25745]
ATAATTTTACTAAAATTTT
>PEPE_0205(lacL) Score=5.1 Pos=-94 [Pediococcus pentosaceus ATCC 25745]
AAATTTTAACTAAAACAAC
# TF - HrcA: PEPE_0894
>PEPE_0894(hrcA) Score=6.4 Pos=-41 [Pediococcus pentosaceus ATCC 25745]
TTAGCACTCCAACTTTCTAAGTGCTAA
>PEPE_0976(clpC) Score=6.9 Pos=-122 [Pediococcus pentosaceus ATCC 25745]
TTAGCACTTTACTTAACAGAGTGCTAA
>PEPE_0420(groS) Score=6.3 Pos=-65 [Pediococcus pentosaceus ATCC 25745]
TTAGCACTTAGAGATGACGAGTGCTAA
# TF - Zur: PEPE_0386
>PEPE_0289(znuA) Score=6.9 Pos=-33 [Pediococcus pentosaceus ATCC 25745]
TAAATAGTAATTATTACTCTTTA
>PEPE_0386(zur) Score=7.3 Pos=-36 [Pediococcus pentosaceus ATCC 25745]
TAAAACGTAATGATTACTATTTA
# TF - NrdR: PEPE_0691
>PEPE_1487(nrdH) Score=5.3 Pos=-122 [Pediococcus pentosaceus ATCC 25745]
GCACAATATATAGTGG
>PEPE_0650(dgk2) Score=5.2 Pos=-83 [Pediococcus pentosaceus ATCC 25745]
ATACAATATGTTGTGG
>PEPE_1437(dgk1) Score=4.1 Pos=-77 [Pediococcus pentosaceus ATCC 25745]
TTTCAAGATATTGTTT
>PEPE_1437(dgk1) Score=4.4 Pos=-46 [Pediococcus pentosaceus ATCC 25745]
GTACAATATGTAGTGC
>PEPE_0483(mntH2) Score=5.7 Pos=-133 [Pediococcus pentosaceus ATCC 25745]
ATACTATATATTGTAT
# RNA - THF
>PEPE_1451(folT) Score=87.5 Pos=-163 [Pediococcus pentosaceus ATCC 25745]
ATGGAGTAGGAATCGATGCGTTAAGTGCCAACAAGACGGAGAGTTGCTTGTTGGACGAATGCTTGTCAGCGATATCGATTCCGCATCTCGCCGTTGA
# TF - TagR: PEPE_0140
>PEPE_0140(tagR) Score=4.6 Pos=-70 [Pediococcus pentosaceus ATCC 25745]
TGTAAATGTTTTCA
>PEPE_0141(tagK) Score=4.6 Pos=-60 [Pediococcus pentosaceus ATCC 25745]
TGAAAACATTTACA
# TF - FruR: PEPE_1166
>PEPE_1166(fruR) Score=5.9 Pos=-73 [Pediococcus pentosaceus ATCC 25745]
TGAATTTTTTTGAATTAATT
>PEPE_1166(fruR) Score=6.1 Pos=-63 [Pediococcus pentosaceus ATCC 25745]
TGAATTAATTTGATTGATTT
# TF - CtsR: PEPE_1428
>PEPE_0455(clpP) Score=6.9 Pos=-95 [Pediococcus pentosaceus ATCC 25745]
AAATATTTGACCTTTTTTGACCAA
>PEPE_0894(hrcA) Score=6 Pos=-107 [Pediococcus pentosaceus ATCC 25745]
AGATGTCTGACCAAATTTGACTAT
>PEPE_0607(clpE) Score=-1.5 Pos=-223 [Pediococcus pentosaceus ATCC 25745]
ATGGTCAATATTGGTCAAACATCA
>PEPE_0420(groS) Score=-0.9 Pos=-128 [Pediococcus pentosaceus ATCC 25745]
TTGGTTAATAAAGGTCAAAAATAC
>PEPE_1428(ctsR) Score=-0.6 Pos=-38 [Pediococcus pentosaceus ATCC 25745]
ATAGTCAACATTAGTCAGAGTATA
# TF - AgaR2: PEPE_1756
>PEPE_1761(gadF) Score=5.6 Pos=-117 [Pediococcus pentosaceus ATCC 25745]
AACTGGTACCAACCAGTT
# TF - LexA: PEPE_0870
>PEPE_1135(uvrC) Score=3.9 Pos=16 [Pediococcus pentosaceus ATCC 25745]
TTGAACATAAGTTGGC
>PEPE_0448(uvrB) Score=4.9 Pos=-127 [Pediococcus pentosaceus ATCC 25745]
GCGAAAGTATGTTCGG
>PEPE_0824(LJ1544) Score=4.7 Pos=-54 [Pediococcus pentosaceus ATCC 25745]
AAGAACGCATGTTCGT
>PEPE_0824(LJ1544) Score=5.1 Pos=-27 [Pediococcus pentosaceus ATCC 25745]
ACAAACAAATGTTCGT
>PEPE_1276(recA) Score=4.8 Pos=-84 [Pediococcus pentosaceus ATCC 25745]
TCGAACTTTTGTTCGC
>PEPE_1243(umuC) Score=5.2 Pos=-41 [Pediococcus pentosaceus ATCC 25745]
AAGAACATATGTTCGT
>PEPE_0870(lexA) Score=5.1 Pos=-68 [Pediococcus pentosaceus ATCC 25745]
GCGAACATTTGTTTGA
# TF - BirA: PEPE_1636
>PEPE_1637(bioY) Score=8.6 Pos=-81 [Pediococcus pentosaceus ATCC 25745]
ATAGTAACC----------------GGTTACTAT
# TF - Lp_2742: PEPE_1308
>PEPE_1743(lp_2739) Score=6.7 Pos=-42 [Pediococcus pentosaceus ATCC 25745]
TTAGTTACACAAGTAATTAA
>PEPE_1308(lp_2742) Score=6.3 Pos=-61 [Pediococcus pentosaceus ATCC 25745]
TTAGTTACATGACTAATTAA
# TF - YwzG: PEPE_1823
>PEPE_1823(ywzG) Score=6.8 Pos=-36 [Pediococcus pentosaceus ATCC 25745]
ATACTATATGAGATATAGTAT
# TF - GntR1: PEPE_1363
>PEPE_1363(gntR1) Score=5.8 Pos=-101 [Pediococcus pentosaceus ATCC 25745]
TATGAAAATATGTTACATA
>PEPE_1363(gntR1) Score=5.3 Pos=-69 [Pediococcus pentosaceus ATCC 25745]
CAAGAAAATTATTTTCTTA
>PEPE_1362(gntZ) Score=5.3 Pos=-98 [Pediococcus pentosaceus ATCC 25745]
TAAGAAAATAATTTTCTTG
>PEPE_1362(gntZ) Score=5.8 Pos=-66 [Pediococcus pentosaceus ATCC 25745]
TATGTAACATATTTTCATA
# TF - MleR: PEPE_1618
>PEPE_1617(mleS) Score=6 Pos=-91 [Pediococcus pentosaceus ATCC 25745]
TATAAAAAATATTTATA
>PEPE_1618(mleR) Score=6 Pos=-61 [Pediococcus pentosaceus ATCC 25745]
TATAAATATTTTTTATA
# TF - CzcR2: PEPE_0028
>PEPE_0029(cadD2) Score=6.1 Pos=-51 [Pediococcus pentosaceus ATCC 25745]
ATATGAATATGTTATCATAT
>PEPE_0028(czcR2) Score=6.1 Pos=-34 [Pediococcus pentosaceus ATCC 25745]
ATATGATAACATATTCATAT
# TF - FlpA: PEPE_0408
>PEPE_0409(copZ) Score=5.7 Pos=-75 [Pediococcus pentosaceus ATCC 25745]
AAATTGACCTACGTCAATTT
>PEPE_0408(flpA) Score=5.7 Pos=-74 [Pediococcus pentosaceus ATCC 25745]
AAATTGACGTAGGTCAATTT
# TF - NihR: PEPE_1695
>PEPE_1695(nihR) Score=4.9 Pos=-91 [Pediococcus pentosaceus ATCC 25745]
TATAACATTTGTTACA
>PEPE_1694(PF09861) Score=4.9 Pos=-95 [Pediococcus pentosaceus ATCC 25745]
TGTAACAAATGTTATA
# TF - AguR
>PEPE_0189(ptcA) Score=6.2 Pos=-145 [Pediococcus pentosaceus ATCC 25745]
AAATGAAACATGTTTCATGA
# TF - YxeR: PEPE_0017
>PEPE_0017(yxeR) Score=5.2 Pos=-41 [Pediococcus pentosaceus ATCC 25745]
TTGTTGACACGGTGTCATTTT
>PEPE_0017(yxeR) Score=4.6 Pos=-76 [Pediococcus pentosaceus ATCC 25745]
ATTTTGACACGGTGTCACTTT
# RNA - SMK_box_riboswitch
>PEPE_0641(metK) Score=51.1 Pos=-77 [Pediococcus pentosaceus ATCC 25745]
TAAGTTACTAGTGTTCCCGATAGGATTAGTTATCCAAAAGATCCTTGTAACCGAAATTAAATTTAGGGGGAATTTACATGTC