# TF - NagR: CPF_2745
>CPF_2745(nagR) Score=5.5 Pos=-57 [Clostridium perfringens ATCC 13124]
ATAGTGGTCTAGACAAGTTA
# TF - ArgR: CPF_2070
>CPF_0683(argG) Score=4.9 Pos=-72 [Clostridium perfringens ATCC 13124]
TTGCATAAATATACTT
>CPF_0683(argG) Score=5 Pos=-52 [Clostridium perfringens ATCC 13124]
ATGTATAATTATTAAC
>CPF_2910(argT) Score=5.4 Pos=-117 [Clostridium perfringens ATCC 13124]
TTGAATATTTATACAT
>CPF_0581(artP) Score=4.6 Pos=-261 [Clostridium perfringens ATCC 13124]
ATGTATAAAAACACAA
>CPF_0581(artP) Score=4.9 Pos=-77 [Clostridium perfringens ATCC 13124]
TTGCATTTTTATTCAT
>CPF_0581(artP) Score=5.6 Pos=-56 [Clostridium perfringens ATCC 13124]
ATGTATAATTATTCAA
# TF - LexA: CPF_1364
>CPF_1927(recA) Score=5 Pos=-35 [Clostridium perfringens ATCC 13124]
TAGAACTTATGTTCGG
>CPF_2895(Cbei_0030) Score=5.1 Pos=-131 [Clostridium perfringens ATCC 13124]
GCGAACATATGTTTTA
>CPF_1364(lexA) Score=4.6 Pos=-71 [Clostridium perfringens ATCC 13124]
GAGAACATAAGTTTGC
>CPF_1607(PF06114) Score=5.5 Pos=-76 [Clostridium perfringens ATCC 13124]
AAGAACATATGTTCGA
# TF - HrcA: CPF_2292
>CPF_2292(hrcA) Score=7.5 Pos=-43 [Clostridium perfringens ATCC 13124]
TTAGCACTCGTTCAGAGTGAGTGCTAA
>CPF_2574(groES) Score=7.9 Pos=-64 [Clostridium perfringens ATCC 13124]
TTAGCACTCTATATTAATGAGTGCTAA
>CPF_0417(htpG) Score=7.1 Pos=-63 [Clostridium perfringens ATCC 13124]
TTAGCACTCAAGTTGTTAGAGTGCTAA
# RNA - Cobalamin
>CPF_1515(cblT) Score=89.4 Pos=-544 [Clostridium perfringens ATCC 13124]
AAATAAAATAAGAGCATTAGGTGTTTAGTAACTTAATAGGGAAAGTTAAAAACTGCAGCCCCCGCTACTGTTGATAAGGACGAGAACAAAAAGCCACTGTGATAAATAGTCATGGAAAGGATTGTTTTAGGATGATTTATTAGCCAGGAGACCTGCCTAGTATGCTATTCTTATT
>CPF_1436(cbiK) Score=115.4 Pos=-302 [Clostridium perfringens ATCC 13124]
ATAATATTTTATATTTTTAGGTTTGATTTTAATTAAAAGGGAAAGTGGTTAAAGTCCACTACAGCCCCCGCTACTGTGATAGGATACAAGTTTCTATTTGACCACTGATTATATAAATTGGGAAGGGAGAAATGAGGATAAGCCTTAAGTCAGGATACCTGCCTAAAGATCATGAACTAAG
>CPF_0185(cbiM) Score=93.5 Pos=-486 [Clostridium perfringens ATCC 13124]
TTAAATATTTAGAAATAGGTTAAATAGTTACATTTGTAACTATATATTAAAAGGGAAGTTGGGTTTAAATCCCACGCGGTCCCGCCGCTGTAATAGAGGAGCTTTTTGTACTTTAAGCCACTGGAATATAATATTTTGGGAAGGCCACAAAAAGTGATGATACTTAAGCCAGAAGACCTGCCTATTTTTAAAACATCAAGAT
>CPF_1296(btuF) Score=84.2 Pos=-488 [Clostridium perfringens ATCC 13124]
TTGATTAACTAATAATTGGTGTGATTTTCGCTTAATAGGGAATGAAGTTAAAGTCTTCAACTACCTCAGTAACCGTGAAGCAGACAAAATCTCAATATGTCACTGCATTTTTTGTGTGGGAAGACGAGATGGAGGAAGAAGCAAAGTCGGGATACCTGCCTTTTATTTAAGTACTATTAT
# RNA - FMN
>CPF_0546(ribD) Score=122.3 Pos=-465 [Clostridium perfringens ATCC 13124]
AAATTCTTCAGGGCAGGGTGAAATTCCCTACCGGCGGTAAAGCCCGCGAGCTAGTTTAGCATGATTCGGTGAAACTCCGAGGCCGACAGTAAAGTCTGGATGAAAGAAGAATATCTA
>CPF_2425(ribU) Score=117.2 Pos=-244 [Clostridium perfringens ATCC 13124]
AAAAAGTCTTCAGGGCGGGGTGTAAGTCCCCACCGGCGGTAAAGCCCGCGAGCTAGTTTTTAGCATGATTCGGTGAAATTCCGAGGCCGACAGTATAGTCTGGATGAAAGAAGATGAGT
# RNA - GEMM_RNA_motif
>CPF_1489(CD2797) Score=68 Pos=-227 [Clostridium perfringens ATCC 13124]
TTAAAAAAATGGGCAAAATTAGAGAAATCTAATGACGCAAAGCTATAGGGACTAAGGTTTATAACTATGTCAGCCAGTTGCCAAA
>CPF_1073(CD2797) Score=70.7 Pos=-282 [Clostridium perfringens ATCC 13124]
TAATATATTGGCAAACCTAGGGAAATCTAGAGACGCAAAGCTAAAGGGGCTAAGGTTATATGATAACTATGCTAGCCAGTTGCCGAAGA
# RNA - Glycine
>CPF_1672(glyP) Score=72.7 Pos=-168 [Clostridium perfringens ATCC 13124]
TGGACGAGCCTCTGGAGAGACTCTTTTAAAAAAGAGCACCGAAGGAGCAAGGTCAAATTTTTTGACTGAAACTCTCAGGTAAAAGGACAGAGGATAAGGT
>CPF_1672(glyP) Score=48.5 Pos=-242 [Clostridium perfringens ATCC 13124]
GATGAAGGTAATGGGAGAGTGATATTTTAAATATCCACCGAAGAGGGAAATCTTTCAGGTATTAGGACCGTTACT
# RNA - L10_leader
>CPF_2724(rplJ) Score=74.5 Pos=-162 [Clostridium perfringens ATCC 13124]
AAAAAGTGAATGAAAGTTTCCGTAGACAGTAGGTGCTGAAAGGCATAACGTAGAACAACCTACCGAGGGCAATTATAGTGTATATAATAGTCTTCCTATGTCTACGGGAAGACTTTTCTTATTATATA
# RNA - L19_leader
>CPF_1962(rplS) Score=31.7 Pos=-71 [Clostridium perfringens ATCC 13124]
ACCGGCGGTCCTCTGTCACAGAGTGTGTTAAGAACGTCAA
# RNA - L20_leader
>CPF_2146(infC) Score=70.1 Pos=-150 [Clostridium perfringens ATCC 13124]
TGATGTCAAGAAGAAACAGCCGTTTCTCACCTTACAGCTATTAATGCTAGTTTGGTCATGAATTTTATTACATTTGATTTTGGTAATAGAGGACGGCTTAAAACCGTCCTTTTTTATTTAT
# RNA - L21_leader
>CPF_2385(rplU) Score=27 Pos=-89 [Clostridium perfringens ATCC 13124]
GGCTTTTGTAAACCGCTCACGAATAGGTTTTAAAAATAACTTTAATTAGTTTACCTTAAGTGGCGAGACCGTTATGAGGA
# RNA - Lysine
>CPF_2850(lysW) Score=110.6 Pos=-335 [Clostridium perfringens ATCC 13124]
AAAAAGAGGTAGAGGCGCGAGAATCAAGATTACTAAAATGGAGTTAAGTAGCGTAGAAGTTTTAGGAAAGGGATTATCGCCGAAGTTTTTGGCTAATACTTTAAGGCTAAATGCTGGGGTTGTATAGAATATATACAACACTGTCACAAAATGTGGAGAGCTATCATCTTA
>CPF_0576(lysA) Score=97.5 Pos=-302 [Clostridium perfringens ATCC 13124]
ACCAAAGTAGAGGTGCCGTAATTAAGAGTAGTCATAAGTAGCTGACAAGTGTTTTATGTATGATGAAAGGGATTATGGCCGAAGAGATATTAATGGTGATTAATATTTCTGGGTATATGTATAATATGCATATAACTGTCACTTTGAAAAAAGTGGAGTGCTACAAGGTACGC
>CPF_1369(lysP) Score=117.8 Pos=-301 [Clostridium perfringens ATCC 13124]
TAACTGAGATAGAGGCGCGATGATTAATAGTATCTTTGCAGAGGTAAGCACGTTGAAGCAAAGTGAAAGGATGAATCGCCGAAACCATTAGAAGAGGCTTTAATTCTATTAGGTTGGGGTTGCATAAAATATATGTAACACTGTCACAAATTATTTTGTGGTGTGCTATCATGAAA
# RNA - MOCO_RNA_motif
>CPF_2048(moeA) Score=59.2 Pos=-344 [Clostridium perfringens ATCC 13124]
AATTAGTATAAATCTCCAAGCTTAAAGATCTAAGGAGAAGGTTCTATGATTTTTAAGCCTGGATTACTAAATTATTTAACATTAAGTTTAATAAGAACTTAAATTGTTAATTGGTTTAATTGGGGTAATCCACAGGGTAAGGTTTGAAAGAATTTTGCCTCCACGTATTTTGGGAAGGAGAATAAGCAAAAGTAAA
# RNA - PreQ1
>CPF_1749(queT) Score=17.8 Pos=-254 [Clostridium perfringens ATCC 13124]
TATATAGACAGTTCGAAAGCCTCCTGTCTTTAAATAAAACTACGGTGTT
>CPF_2260(iunH) Score=54.8 Pos=-375 [Clostridium perfringens ATCC 13124]
TTTGGTAGAGGTTCGTAACCATCCCTCTATAAAAAACTAAGGGCTG
# RNA - Purine
>CPF_2558(guaB) Score=69 Pos=-286 [Clostridium perfringens ATCC 13124]
CAAAACGGAATATAAACAAACTCGTATAAGCTTTGAATAAGGCAAGGCGTTTCTACCGGAAACCTTAAATTTCCGTCTATGAGTGAATTTGATATACTA
>CPF_2829(add) Score=77.2 Pos=-213 [Clostridium perfringens ATCC 13124]
AAATAAAAAATAAATTTTGCTTCGTATAACTCTAATGATATGGATTAGAGGTTTCTACCAAGAACCGAGAATTCTTGATTACGAAGAAAGCCTATTTGCTT
>CPF_0319(xpt) Score=70.7 Pos=-339 [Clostridium perfringens ATCC 13124]
TATGTACTTATATAAGTATATCGTATATGCTCGACGATATGGGTTGAGTGTTTCTACTAGGAGGCCGTAAACATCCTAACTACGAATATATAGGTGATTTCTAT
>CPF_0385(pbuX) Score=75.7 Pos=-361 [Clostridium perfringens ATCC 13124]
ATAAGTGTATTAAATTTTAACTCGTATATAATCGGTAATATGGTCCGAAAGTTTCTACCTGCTAACCGTAAAATAGCAGACTACGAGGAGTTGTACTATAAAT
# RNA - PyrR
>CPF_1756(pyrP) Score=26.1 Pos=-47 [Clostridium perfringens ATCC 13124]
AAACTTTTAATTTAGACCTGAGAGTCTAGAAAAGGG
>CPF_2898(carA) Score=29.2 Pos=-283 [Clostridium perfringens ATCC 13124]
AATACACTTTAAATTGGTCCCGTGAGGCCAGAAAGAGGTATAATTATGTTAAATAGAATTTTTTGT
>CPF_1422(pyrP) Score=30.6 Pos=-207 [Clostridium perfringens ATCC 13124]
ACTATTCTTTAAAGATAGTCCAGAGAGGCTACAAGAATTAATTATT
>CPF_1422(pyrP) Score=38.1 Pos=-84 [Clostridium perfringens ATCC 13124]
TTTACCTTTTTAAATCAGTCCCGTGAGGCTGAAAAAAGGAGAAGCAGAGCTTTCTCCTTAAGAAAAAATAAGGAGGCTTAAATTAT
>CPF_1387(pyrB) Score=46.9 Pos=-180 [Clostridium perfringens ATCC 13124]
AATAACCTTTAAATTTGATCCAGAGAGGTCAATAAGGAAGTTATATAGTTGAATTATAATCGTAAAAGATTTATTTATACGTGAAAAGTCTTCCTTATCTTAGGAAGACTTTTTTTAAT
# RNA - SAM
>CPF_2435(metK) Score=92.5 Pos=-355 [Clostridium perfringens ATCC 13124]
ACTCTTATCCAGAGAGGTGGAGGGAAAAAGGCCCTATGAAACCCGGCAACCAGTGAGAAATCACTACGGTGCCAATTCCGGTAAAGAAATTCTTTACAAGATGAGAG
>CPF_2617(metT) Score=67.5 Pos=-264 [Clostridium perfringens ATCC 13124]
ATCTTATCAAGAGAGGTGGAGGGACTGGCCCTGTGAAACCCAGCAACCGGTAATTCTTTGCGGTTAAAACAATGCTAATTTTAAAATGAGAAAAATCAGTAGTAATTTCCCATGCAAAGATTTATAGCGGTGCTAAATCCTGCGGTAGAAACTGAGAGATAAGA
# RNA - T-box(Ala)
>CPF_2033(alaS) Score=102.5 Pos=-330 [Clostridium perfringens ATCC 13124]
ATGAAAAGCGTTGACGAGAATGAGTAGGCATTTATCTTTTAGTCAGAGAGGAAGTGGTTGGTGAGAACTTCTTAAAAGAGATGTTGAAGCTATCTTTGAGCTATAATTTTTAGAGTGATGTAGTTTTACATAATTAGGGTGGTACCGCGGAGCATAGGATTTCGTCCCTTTT
>CPF_0706(alaR) Score=63.1 Pos=-435 [Clostridium perfringens ATCC 13124]
GAAAAACAGTGAAGAGAAAGAGTAAATTAGGTGGACTTTTCAGAGAGCTAAAGTTTGGTGAGATTTAGTAAGAAAGCTTAATTGAAGCAGTCTCGGAGTTTCTTGTTGAGAACTAA
# RNA - T-box(Arg)
>CPF_1915(argS) Score=97.7 Pos=-309 [Clostridium perfringens ATCC 13124]
TAAAAAGTCTGTGAAGAGAAGAGTAGTCTTTATGATTTCTTAAGCGAGTAAGGGATGGTGTAAGCCTTATAGAATAGTTTAGATGAAGAGAGCCTCTGAGATTGCATTTTAATAACTAGTATTTTTATTAAAGTGTCGCTTATGCGTTAAATTATAAAGTGGGTTTTTAACCAATTAGAGTGGTACCGCGGATATATCCGTCTCTTTG
# RNA - T-box(Asn)
>CPF_2233(asnA) Score=98.1 Pos=-446 [Clostridium perfringens ATCC 13124]
ACAAAGCATTGATGGGAAAAAGTAATCTTTGGAAAGAGTTTTAGCGATTGAGGGATGGTGAAAGCCTCATACTATACCTTTGATGAAGAACATCCTTGAGCTTCTAACCGAACTTCAAAATTTATTTTGGACAGTAGACTTAGACGGGTTTCTTTCCGTTAAAAGAAGGACAGTGTTAAGATGCACTGTTATTAAGTGAGTGCTTTTGTACTAACATAGGTGGTACCGCGGAGATGATTATACAGCCTTCGTCCTATTAAA
>CPF_2823(asnS) Score=98.6 Pos=-305 [Clostridium perfringens ATCC 13124]
TATTTACTATGAAGAGAAGAGTAAACTTAGGAAGTAACTCTCAGCGAGCAGATTATGGTGTGAGTTCTGCAGTGTATCCTATTTTGAAGAACATCTCTGAGTTTCTAACCGAAATCCTTTTTAGGAGAGTAGACTTAGACGGTTTCAGGCCGTTATACTTGAAGAACATTTTTGTGTTCATAAAGCCGGCTATTTTATAGCAATTTGGGTGGTACCGCGAATAATGCCATTCGTCCCATTAAT
# RNA - T-box(Cys)
>CPF_1223(cysP1) Score=67.6 Pos=-331 [Clostridium perfringens ATCC 13124]
GAAAAGCTGTGATTAGAAAAGTAGAATTAATTTCTTTATTCAGAGAGAGTCTTCTAGGCTGAAAAAGACTTTAAAGAATTTTTTCATGAGTGCATCTATGAGCTTGTTTCCAGAAATAATCTTAGGTTAGAGTAGGGGAATGCGGGTATGCCCGTTATAGCAGAGTGGTATATTTGTACCTAAAGAGATTTTGTAGTTTAATTTAGCTTACTACTTAAAATCAGAGTGGAACCGTGGAATTTTACTTCTGCCTCTGTATA
>CPF_1191(cysP2) Score=104.2 Pos=-376 [Clostridium perfringens ATCC 13124]
TAAATGCGTTGAAGAGGGAAAGTAAATATTATAAGTTACTACAGAGAGAGGTTAGTTTGCTGAGATAACCTGTAATGAGTATTATTGAAGTGCCCCTTGGAGCTTAAGTGCCGAATTAAGTAGGTGTTTATGGGAACTCCCATTATAGAGTTAGGGTATGAATGTACCTAAATAGAGATGGATATTATATATCTAATCAGAGTGGAACCGTGGAAGTATAGTCTTCTGCCTCTGTAAT
>CPF_1529(cysK) Score=109.7 Pos=-281 [Clostridium perfringens ATCC 13124]
GATAAATGTTGTGATAAAGTAAAGTATTATAAGGATAGGTCACAGAGAGAAAGTGGGGCTGGAAATCTTTCACCAAAGCTTTATAAGAAGTGCGCTTTTGAACAGGAATTTCGAAAAGTTATAAGTAGAAATTTTCGAGTATCACCCGTTAACGTGATAGAGTATTTATAGTACTTGATTAAGTGAGGTCTTTACCTAATTAGAGTGGAACCACGGAGTAAAAAGCTTCGTCTCTAAA
>CPF_0168(ubiG) Score=131.4 Pos=-380 [Clostridium perfringens ATCC 13124]
TAAATGCATTGAAAAAGTAAAGTAGCATTTTGGAAAATCACAGAGAGGAAAATGATGGTGAGAGTTTTCTATTTAGAAGAAATGTGAAGTGCACTTTGGAGCAGAAATCCGAAATTTTTAGTAGGGTTCTCCGGGATCACCCGTTATAGTGATTAGGCATGTTAGTGCTAAATTTTGAGTGCAGGTATATCTTTTATATCTGAATTAGAGTGGAACCGCGAGTTACCTCGTCTCTATAGA
# RNA - T-box(Gly)
>CPF_2779(glyS) Score=91.2 Pos=-339 [Clostridium perfringens ATCC 13124]
AATATGTACTATGATGAAGAAGAGTAATTTTAAAATCTTTTTTAGAGAGATAACGGTTGGTGAAAGTTATTAAAGGTTTAAAATGAAGGGAGCTTTTGAGTACAATTATTTTGAGAGATGAGCTTTTGCTAAAAAGGGTGGAACCGCGGAATTTTATTTCGTCCCTTTG
# RNA - T-box(Ile)
>CPF_2865(ileS) Score=76.1 Pos=-383 [Clostridium perfringens ATCC 13124]
TTTAAAGACTGTGAACAGGGCAAGTACTTATATAGAACCTTATTCAGAGAGTAGTTGGTTGGTGTGAAACTATAGGTATATTTAAGGAAAATCACCTGGGAGTTGGAGACTGAAAGGAATATATTCTTATTAAGTTATCCCGTATATCCACGTTACAGGATGCGAGCATTA
>CPF_0392(brnQ) Score=114.6 Pos=-416 [Clostridium perfringens ATCC 13124]
TAAATTCTATGAAGAGAAAAAGTAGGGCATATTTATTGATCCACAGAGAGTTGACAAGTTGCTGAAAGTCAATGTTCAAGGTATATCTGAAAATCATCTCGGAGAAGTAAAGCTGAAGCTATATTTTAGTAAGTTTTATCGGATTTTCACCGTTATAGGAAAAGCGTATTATTTAGTACGTATTTTAAGAGTGCTATAAATTAAATCTATTTTTTTAGGTTATATTTATAGAATTAGGGTGGTAACGCGATTAAACCTCGTCCCTTTTAT
# RNA - T-box(Leu)
>CPF_0657(leuS) Score=138.5 Pos=-297 [Clostridium perfringens ATCC 13124]
ATTAAAAGCTTTGATTAGGAGTAGTAATATTACCTCATAGCCTAAAGAGAGTTGTGGTTTGCTGTGACACAATGGTATGAAAATATGAACTTGCCTATGAGCATATGTGTGAAAAAAAGCACATACGGGAAAAACCCGTTATAAAATCGAGTGAGGAAAAGAAATTTTCCTAATAAGAGTGGTACCGCGAATATCCTTTCGTCTCTTAA
# RNA - T-box(Met)
>CPF_2847(metS) Score=85.7 Pos=-332 [Clostridium perfringens ATCC 13124]
AGAAAATGCAATGAAGAGAAGAGTAATAAAGAAGATTGTATAAAAGAGAGCTGGGGTAGGTGAGAGCCAGATGCATGAGACTTTATGAAGATGGACTTGGAGCAGACTTTTTGAGAATTTTAATTTTAGAAAAGTACGGTGGCAACCGTTATATTGCAGAGTAATAAAATAAGTTAAACTTAGGAGTTACTTAGTGAGATATTTATGGTGACATAAATATGAAATAGAGTGGTATCGCGTAATTAACGCCTCTATG
# RNA - T-box(Phe)
>CPF_2140(pheS) Score=124.5 Pos=-397 [Clostridium perfringens ATCC 13124]
GATAAAAACATTGATAGAGAGAGTAGATATAGTAATTTCTTATCAGGGAAAAAATGCCATGGACTGAAAGCATTTTTAGAAACCTATATTGAAGTTCACTCTGGAGTTCTAACTGTGAAATATAAAGTAGTAGTTAGCGGCATAGTCGTTATTTGAAATTAAGTGAGTACTAATTTTTTTAGTACTAATTAGGGTGGTACCACGGATATGAATACCCCGTCCCTTGT
# RNA - T-box(Pro)
>CPF_2738(proS) Score=83.1 Pos=-273 [Clostridium perfringens ATCC 13124]
TGTAAAGACTGTGAAAAAGATTAGTAGAAACGCTTATACAGAGAGAAAATACTAGGCTGAGAGATTTTCAACATGTTTTGAACCTACTTTGGAGTCGTAGCAAAAAACTAACCGGGTTTAATACCGTTAACAATGAATAGAGTACAAATTTAGGTGGTACCGCGAAATACAAGCTCGCCCTAAAG
# RNA - T-box(Ser)
>CPF_0014(serS) Score=115.7 Pos=-293 [Clostridium perfringens ATCC 13124]
ATAAACCGTTGATCAGGCTAGTAATGTTATATATTGCTTTCAGAGAGCTAGTGGTTTTGGTGTGAACTAGTACAATATTTTCATGAATCCACCTGTGAGGGACTGTGATGAGCAGTACGGAATTAACCGTTAAAGTTTTTAAGAGGATAAAATCTTTTTTTGATTTTATCAATTAGGGTGGCAACGCGGAGTCTTTTCGTCCCTTTTTA
# RNA - T-box(Thr)
>CPF_2631(thrS) Score=99 Pos=-300 [Clostridium perfringens ATCC 13124]
TTAACACAATGAAGAGACGAGTAAACTTTGGTACATTTTCAGAGAGAAGGTACAGTAGCTGTAAGTACTTTTAAATGGAATTAGTTGAAGACTACCTCTGAGTGACTCTAATCCAGTCCGTCATAATCACGTTACGATTAATTTTAAGTGGTACTTTATTTTTAATTATTAAAGTACAAATTGGGTGGAACCACGGGAATATACACTCTCGTCCCTTTTCT
# RNA - T-box(Trp)
>CPF_0614(trpS) Score=119 Pos=-345 [Clostridium perfringens ATCC 13124]
AAATATCAATGACAAGAATTAGTAAACTTAAAAACAAACTTTAAGAGAGTCATATGTTTGCTGGGAGTATGATAGTTATGATTAAGTTGAATGGATCTTCGAGATGTTTAGAGGAATTTTAGTATTCTAAATCGTAATTCTTACGTTACAAGAAAGAGATACAAAGAATTTTCTTTGTAACATTAGGTGGTACCGCGATATATTCGTCCTATAAGT
# RNA - T-box(Val)
>CPF_2175(valS) Score=117.9 Pos=-446 [Clostridium perfringens ATCC 13124]
GATACAAACAGTGATAAAGAGGAGTAAAGATAGGAAGAACTTTAAGAGAGGAAATCCTTGGGTGTAAGATTTCTAAGTTTGATATCTTGAAGGTAGCTTTTGAGTTTCTTTGGTGAAATTATTAAAGTAATCAAAGACGGCAATTTCAGTCGTTAATTTTAGAGAGCCCTTTTGTGAGGGAAAAAAGGTGGTACCGCGAGTTTTCGTCCTTTTA
# RNA - glmS
>CPF_2636(glmS) Score=97.9 Pos=-302 [Clostridium perfringens ATCC 13124]
ATAATAGATTAAAGCGCCAGAACTTAAAGTTTTATTGATAGACTAATAAGTAATTTAACTTTAGTAGATTAAAATGCTTATTAAGATTCTTAATAAATTTAAGTTGACGAGGTTGGGGAGTATCGAATTTTCGGCGGATGCCCCACGGTAAAGCACTACCGTAAAAGATTGGTTAAAGCTTAAAAGTGATTTTAAGGACAAAGCCAATTGGGTGTTTCAA
# RNA - TPP
>CPF_1545(thiD) Score=74 Pos=-184 [Clostridium perfringens ATCC 13124]
AAAAAATAGCTAGGGGGGCCAGTAGTGTCTGGCTGAGATTAGAAATGAAATTTCTTGACCCTTTAACCTGATCTGGTTAATACCAGCGTAGGGAAGCCCAAGATACATATA
>CPF_0670(thiC) Score=78.8 Pos=-253 [Clostridium perfringens ATCC 13124]
GTAAGTGCTAGGGGTGCATTTTATATGCTGAGAGGATAATATCTATCTAACCCTTAAAACCTGATGTAGTTAGTACTACCGTAGGGAAGCATAAACTGTTGTTTAT
>CPF_1622(thiT) Score=77 Pos=-194 [Clostridium perfringens ATCC 13124]
TCATGTGCTAGGGGTGCCTTTAGGCTGAGAGATGATTATTTTATCATTAACCCTCAACACCTGATCTGGTTAATTCCAGCGTAGGGAAGCGTTTAGGGCTGTATTT
>CPF_2870(tenA) Score=71 Pos=-321 [Clostridium perfringens ATCC 13124]
ACTTTATAGCTAGGGGTGCCTTTGGCTGAGAGATAACATTTCGTTATTAACCCTTAAACCTGATCTGGATAATACCAGCGTAGGAAAGCCTGTAGAAAGTTTT
>CPF_1856(thiS) Score=70.2 Pos=-232 [Clostridium perfringens ATCC 13124]
AAGATATTGCTAGGGGTGCTGTAAAAGGCTGAGAGGGATAATAAATCCTAACTCTAATAACCTGATTTGGTTAATACCAACGTAGGGAAGTATATTTTAAGTTGT
# TF - Zur: CPF_2029
>CPF_0625(fld) Score=6 Pos=-54 [Clostridium perfringens ATCC 13124]
TAATTGAAATTGATTTTCATTAA
>CPF_0625(fld) Score=6 Pos=-121 [Clostridium perfringens ATCC 13124]
TTATTGAAAATTATTATCATTTA
>CPF_2668(rpsD2) Score=5.8 Pos=-81 [Clostridium perfringens ATCC 13124]
ATAATGATAATCATTTTCAATAA
>CPF_1709(znuC) Score=6.2 Pos=-74 [Clostridium perfringens ATCC 13124]
AAAATGCAAATTATTTGCACTTG
>CPF_2413(znuA) Score=5.6 Pos=-32 [Clostridium perfringens ATCC 13124]
ATAATGCGAATCATTTGCAAACA
>CPF_0717(zupT) Score=5.9 Pos=-55 [Clostridium perfringens ATCC 13124]
TAATTGAAAATAATTATCAATTG
>CPF_1128 Score=5.6 Pos=-85 [Clostridium perfringens ATCC 13124]
CAATTGAAAATAATTATCAAATT
# RNA - ykkC-yxkD
>CPF_1040(COG3382) Score=87.5 Pos=-150 [Clostridium perfringens ATCC 13124]
ATATAAAGTTTTCTAGGGTTCCGTAGCTTTTTAGTTAGTCTGGTCCAAGAGAAAACGCACAGAAAAACTGTGAACACGGAAGGATAAAAGCCTGGGAGAT
# RNA - ykoK
>CPF_1153(mgtB) Score=75 Pos=-484 [Clostridium perfringens ATCC 13124]
ATATTAATCGGTAGGTGAGGTTACCACCGGGATACGGATTGCTGCCGCAAAATAGTGGAGACACTATGAGAAGGTTAGCAGGCTATGTCGAGAAACAAGGCATAATCTAATGCAATTTCATTGCCCAGTGAAGCTAAAACTTGAACGATATTATACTTAA
# RNA - yybP-ykoY
>CPF_0516(COG1971) Score=54.1 Pos=-166 [Clostridium perfringens ATCC 13124]
GTTTCCATATGAGGGAGTAGTTAGCTCAAGTTGAATGAGTGATTAAGTCAACAAATTGACCAAAGAGCTTTGGTCTGGCTTAATCTTAAATAGCGAGACTTATATGCAGTTTTT
>CPF_0317(atcL) Score=42.6 Pos=-245 [Clostridium perfringens ATCC 13124]
CTATTGTGTTAAGAGGGAGTAGTTGCAAGCTATAATATCAACATCGCGGTTAACGAAAAGTTACCTGGTATTATACACCAATTTGGTTACAAGACTTTTAATATAATC
# TF - CcpA: CPF_2863
>CPF_0684(tal) Score=4.2 Pos=-128 [Clostridium perfringens ATCC 13124]
ATGTAAACTTTAAATA
>CPF_0684(tal) Score=4.1 Pos=-232 [Clostridium perfringens ATCC 13124]
ATGATAAAGGTTACAT
>CPF_1911 Score=4.1 Pos=-98 [Clostridium perfringens ATCC 13124]
AATTAAAAATTTAATT
>CPF_2863(ccpA) Score=4.1 Pos=-138 [Clostridium perfringens ATCC 13124]
TTGAAAAAAAATTAAA
>CPF_2863(ccpA) Score=4.6 Pos=-152 [Clostridium perfringens ATCC 13124]
AAGAAAACGTTTTTTT
>CPF_0818(ptnA) Score=4.5 Pos=-235 [Clostridium perfringens ATCC 13124]
TTGAAAATTTTTTAAA
>CPF_0733 Score=4 Pos=-95 [Clostridium perfringens ATCC 13124]
AATAAAAATATTTCTT
>CPF_0733 Score=4.3 Pos=-57 [Clostridium perfringens ATCC 13124]
ATGTAAATGTTTAACT
>CPF_2879 Score=4.2 Pos=-19 [Clostridium perfringens ATCC 13124]
TTGTTAAATTTTTAAT
>CPF_1170(glpF) Score=4 Pos=-60 [Clostridium perfringens ATCC 13124]
TATTAAATGTTTATTA
>CPF_0094(gldA) Score=4.4 Pos=-31 [Clostridium perfringens ATCC 13124]
TAGTAAATGATTTTAT
>CPF_0071(nagE) Score=4 Pos=-116 [Clostridium perfringens ATCC 13124]
TAGATAACTTTTATAT
>CPF_1048(fucI) Score=4.7 Pos=-93 [Clostridium perfringens ATCC 13124]
AAGAAAACGTTTATAT
>CPF_1681(clpB) Score=4.3 Pos=-148 [Clostridium perfringens ATCC 13124]
ATATAAATGATTTATT
>CPF_0244(CPF_0244) Score=4.2 Pos=-223 [Clostridium perfringens ATCC 13124]
TTAAAAATGTTAATAA
>CPF_0244(CPF_0244) Score=4.5 Pos=-129 [Clostridium perfringens ATCC 13124]
TTGAAAACGTTTAGAT
>CPF_0244(CPF_0244) Score=4.5 Pos=-28 [Clostridium perfringens ATCC 13124]
ATTAAAAAATTTTAAA
>CPF_1070(nagE) Score=4.8 Pos=-151 [Clostridium perfringens ATCC 13124]
AAGAAAACGTTTTAAA
>CPF_2652(malE) Score=4.8 Pos=-183 [Clostridium perfringens ATCC 13124]
TTGAAAATGTTTTCTT
>CPF_2652(malE) Score=4.5 Pos=-128 [Clostridium perfringens ATCC 13124]
TTTAAAAAGATTTTAA
>CPF_0875(nagJ) Score=4.8 Pos=-128 [Clostridium perfringens ATCC 13124]
TTGAAAACGATTTTAA
>CPF_0875(nagJ) Score=4.1 Pos=-91 [Clostridium perfringens ATCC 13124]
ATAAAAATGTATTAAA
>CPF_1046(fucO) Score=4.3 Pos=-148 [Clostridium perfringens ATCC 13124]
ATTAAAAATATTTATT
>CPF_0851(sdaR) Score=4.7 Pos=-131 [Clostridium perfringens ATCC 13124]
TTGTAAATGTTTAAAT
>CPF_1087(pulA) Score=4.7 Pos=-106 [Clostridium perfringens ATCC 13124]
TTGAAAACGTTATTAT
>CPF_2251(glsA) Score=4.3 Pos=-99 [Clostridium perfringens ATCC 13124]
TTTTAAAAGATTTATA
>CPF_2251(glsA) Score=4.7 Pos=-75 [Clostridium perfringens ATCC 13124]
TTGAAAATGTTATAAT
>CPF_1716(CPF_1716) Score=4.6 Pos=-114 [Clostridium perfringens ATCC 13124]
AAGAAAACGATTAATT
>CPF_1716(CPF_1716) Score=4.2 Pos=-63 [Clostridium perfringens ATCC 13124]
TAGTAATCGTTTAAAA
>CPF_1716(CPF_1716) Score=4.2 Pos=-48 [Clostridium perfringens ATCC 13124]
AAGAAAAAATTAACAA
>CPF_1064 Score=4.6 Pos=-148 [Clostridium perfringens ATCC 13124]
ATGAAAATGTTATCTT
>CPF_1064 Score=4.1 Pos=-76 [Clostridium perfringens ATCC 13124]
TTTAAAAAAATTATTA
>CPF_0556 Score=4.6 Pos=-48 [Clostridium perfringens ATCC 13124]
AAGAAAATGTTTACAA
>CPF_0541(treB) Score=4.2 Pos=-214 [Clostridium perfringens ATCC 13124]
ATTTTAAAGTTTAATT
>CPF_0765(lacR) Score=4.6 Pos=-62 [Clostridium perfringens ATCC 13124]
ATGTAAATGTTTAATA
>CPF_2616(ispF) Score=4.1 Pos=-202 [Clostridium perfringens ATCC 13124]
ATATAAAATTTTATAT
>CPF_1753 Score=4.5 Pos=-50 [Clostridium perfringens ATCC 13124]
TTGAAAATATTTATAT
>CPF_1512(cggR) Score=4.4 Pos=-112 [Clostridium perfringens ATCC 13124]
AAGAAAAAATTTTCTA
>CPF_0686(CPF_0686) Score=4.1 Pos=-47 [Clostridium perfringens ATCC 13124]
TTAAAAAAGTTTAGAA
# TF - Rex: CPF_2586
>CPF_2556(narK) Score=5.4 Pos=-44 [Clostridium perfringens ATCC 13124]
GAGTTAAAAAATTAACAA
>CPF_2052(narA) Score=5.5 Pos=-47 [Clostridium perfringens ATCC 13124]
ATGATAAATTTTTAACAA
>CPF_2585(crt) Score=5.5 Pos=-124 [Clostridium perfringens ATCC 13124]
TTGTTACAAAATTAACAA
>CPF_2657(ptb) Score=5.2 Pos=-190 [Clostridium perfringens ATCC 13124]
GTGTTTAAAATTTAACAA
>CPF_2657(ptb) Score=5.7 Pos=-43 [Clostridium perfringens ATCC 13124]
TTGTTATAAATTTAACAA
>CPF_2460(thlA) Score=4.7 Pos=-35 [Clostridium perfringens ATCC 13124]
TTGATAAATTTTTACCTA
>CPF_2460(thlA) Score=5.6 Pos=-115 [Clostridium perfringens ATCC 13124]
TTGTTTAAAATTTAACAA
>CPF_0098(ldh) Score=5.1 Pos=-64 [Clostridium perfringens ATCC 13124]
TTGTTATATAATTAACTT
>CPF_2855(adhE) Score=5.2 Pos=-286 [Clostridium perfringens ATCC 13124]
TTGATAAAAAAATCACAA
>CPF_2855(adhE) Score=5.2 Pos=-266 [Clostridium perfringens ATCC 13124]
TAGTTAAAAAAATAACGA
>CPF_0728(noxE) Score=5.6 Pos=-60 [Clostridium perfringens ATCC 13124]
TAGATAAAAATTTAACAA
# TF - CzrA: CPF_2588
>CPF_2588(czrA) Score=7.1 Pos=-49 [Clostridium perfringens ATCC 13124]
CATATGAACAGATGCTCATATG
# TF - AgaR: CPF_2963
>CPF_2961(agaS) Score=5.5 Pos=-38 [Clostridium perfringens ATCC 13124]
CAACTGGTAATGACAACATT
>CPF_2961(agaS) Score=5 Pos=-83 [Clostridium perfringens ATCC 13124]
TAACTTGTAATAACATCATT
>CPF_2149(agaK2) Score=5.8 Pos=-40 [Clostridium perfringens ATCC 13124]
CAAGTGGTAATTACAACTAT
# TF - TreR: CPF_0543
>CPF_0541(treP) Score=4.8 Pos=-63 [Clostridium perfringens ATCC 13124]
AACATATACGTATATGTT
>CPF_0541(treP) Score=5.3 Pos=-32 [Clostridium perfringens ATCC 13124]
AAGATATACGTACAAGTT
>CPF_0542(treA) Score=5.9 Pos=-34 [Clostridium perfringens ATCC 13124]
AACTTATACGTACAAGTT
# TF - YhcF: CPF_2285
>CPF_2288(yhcG) Score=6.9 Pos=-62 [Clostridium perfringens ATCC 13124]
GTGTATTAATGAAGTAATACAT
>CPF_2288(yhcG) Score=6.7 Pos=-93 [Clostridium perfringens ATCC 13124]
GTGTATTAGTGGTATAATACAC
# TF - MalR1: CPF_2649
>CPF_2649(malR1) Score=6.3 Pos=-67 [Clostridium perfringens ATCC 13124]
AACTGGTATCGTTACCGAAA
# TF - MalR2: CPF_0420
>CPF_0421(malL) Score=5.8 Pos=-68 [Clostridium perfringens ATCC 13124]
GTGGGCAAACGTTTGCACAT
# TF - ScrR: CPF_1784
>CPF_1785(scrA) Score=5.9 Pos=-244 [Clostridium perfringens ATCC 13124]
TTATGAAACTAATTCCATAT
>CPF_1785(scrA) Score=6.7 Pos=-71 [Clostridium perfringens ATCC 13124]
ATATGGAACTGATACCATAT
# TF - RbsR: CPF_1879
>CPF_1884(rbsK) Score=4.9 Pos=-45 [Clostridium perfringens ATCC 13124]
CTAGTTAATCGGTTCACTGA
>CPF_1884(rbsK) Score=6.5 Pos=-32 [Clostridium perfringens ATCC 13124]
TCACTGAATCGGTTAACTAG
# TF - Cbei_4343: CPF_0445
>CPF_0445(Cbei_4343) Score=9.3 Pos=-56 [Clostridium perfringens ATCC 13124]
TGTATATACTGTATATATAGAATATATACAGTATATACA
# TF - IscR: CPF_2040
>CPF_0654(hesB) Score=4.8 Pos=-76 [Clostridium perfringens ATCC 13124]
TTTATTTTGTTTAAAATTATATAATTTAA
>CPF_0654(hesB) Score=5.3 Pos=-101 [Clostridium perfringens ATCC 13124]
TAAATTCCTACTAAAATAGTCTTGATTTA
>CPF_2350(yxeON) Score=5.3 Pos=-69 [Clostridium perfringens ATCC 13124]
TCAAAGTTGACAATTTTGATGGGAATTAA
>CPF_0098(ldh) Score=5.5 Pos=-46 [Clostridium perfringens ATCC 13124]
ATAATTCAGAGTAATTAACTAGGAATTAG
>CPF_2040(iscR) Score=5.8 Pos=-80 [Clostridium perfringens ATCC 13124]
TTATTGTTGACAAATTTACTCGGTTTTGA
>CPF_2040(iscR) Score=5 Pos=-39 [Clostridium perfringens ATCC 13124]
ATAAAGTACATCGAATTAGTCAGATTTAG
# TF - SdaR: CPF_0851
>CPF_0853(grtP) Score=5.7 Pos=-135 [Clostridium perfringens ATCC 13124]
CTTTGTGCGTTTGCATAAAG
# TF - HcpR: CPF_2845
>CPF_1730 Score=5.9 Pos=-75 [Clostridium perfringens ATCC 13124]
AGGTAACCTATGTTACAG
>CPF_2909(hcp) Score=5.6 Pos=-141 [Clostridium perfringens ATCC 13124]
AGGTAACTTTAGTTACCG
# TF - NrdR: CPF_2012
>CPF_2830(nrdD) Score=4.8 Pos=-32 [Clostridium perfringens ATCC 13124]
GTACAAGATATAGTGG
>CPF_2830(nrdD) Score=4.6 Pos=0 [Clostridium perfringens ATCC 13124]
ATGCTACATGTTGTGA
>CPF_2671(nrdA) Score=5.3 Pos=-27 [Clostridium perfringens ATCC 13124]
TTACTATATATTGTGG