# TF - LexA: CD1931
>CD1931(lexA) Score=4.8 Pos=-86 [Clostridium difficile 630]
AGGAACAAATGTTTGC
>CD1328(recA) Score=5.2 Pos=-41 [Clostridium difficile 630]
GAGAACAAATGTTTGT
>CD2807(ruvC) Score=5 Pos=-67 [Clostridium difficile 630]
TAGAACATAAGTTTTT
>CD1630 Score=5 Pos=-89 [Clostridium difficile 630]
AAAAACTTATGTTTGC
# TF - HrcA: CD2463
>CD0193(groES) Score=7.1 Pos=-136 [Clostridium difficile 630]
TTAGCACTCTATTAGATAGAGTGATAA
>CD2463(hrcA) Score=7.2 Pos=-47 [Clostridium difficile 630]
TTAGCACTCGAACTTAGTGAGTGCTAA
# RNA - Cobalamin
>CD2999(btuF1) Score=107.1 Pos=-401 [Clostridium difficile 630]
TAAATTAAAATAATACTAGGGTACTATATTAGTTTAATAGGGAAAGTGATGAAAATTCACTACAGCCCCCGCTACTGTATACGGATACGAAATCAAAATCCACTGAAATTTATAAAAATTTTGGGAAGGGTGATGGAGGAAAAGCCGTGAGTCAGGAGACCTGCCCAGTATTATATAAGTTCA
>CD0324(cbiM) Score=102.8 Pos=-373 [Clostridium difficile 630]
AAATATATAATATTATAGGTTCTTTAAGCAAGATTAATAGGGAAAAAGGTTAAATTCCTTTACAGCCCCCGCTACTGTGATGCAGACGAAACTTTTGTTAGCCACTATGATGATATTTTTTATATCTCATGGGAAGGAAAAGGAGTAGGATGAAGCTAAGTCAGGAGACCTGCCTAAAATATTAAAGTAATTTC
>CD3435(cbiP) Score=102.1 Pos=-295 [Clostridium difficile 630]
GAATATTAGATTAAAATTAGGTTCTTAATTAGATGTTAAAAGGGAAAAAGGTTAGATGCCTTTGCAGCCCCCGCTACTGTGAAACCAACGAAACTATAAATACCACTGTCAGTTTGATGGGAAGGTTATAGAAGTAGGATGAAGTTAAGCCAGGATACCTGCCTAATTTAATTTAAAACAA
# RNA - FMN
>CD1700(ribD) Score=118.8 Pos=-254 [Clostridium difficile 630]
ACTTAATCTTCGGGGTAGGGTGAAATTCCCAATCGGCGGTATAGCCCGCGAGCCAAGGTAAAACTTGGTTGATTTGGTTAAATTCCAAAGCCGACAGTAAAGTCTGGATGGAAGAAGATATTT
>CD3299(ribZ) Score=97.5 Pos=-289 [Clostridium difficile 630]
TTTTTCTTCATAAACGGGTGAAATTCCCTATCGGCGGTAAAAGCCCGCGAGCCTTATGGCATAATTTGGTCATATTCCAAAGCCAACAGTAAAATCTGGATGGTAGAAGAAAATAGT
>CD0147(ribU) Score=123.2 Pos=-268 [Clostridium difficile 630]
AAGATCTTCGGGGCAGGGTGAAATTCCCTACCGGCGGTATAGCCCGCGAACTACTTAGGTGGTTGATTTGGTGAGATTCCAAAGCCGACAGTAAAGTCTGGATGAGAGAAGATATTTAT
# RNA - GEMM_RNA_motif
>CD2309(CD2309) Score=66.6 Pos=-142 [Clostridium difficile 630]
AACTAAATCGGCAAAACTAGAGAAATTTAGTGACGCAAAGCTATAGGGACTAACGCTTATAAAATAAGTTATGTCAGCCAGTTGCCAAAAA
>CD1990 Score=58.9 Pos=-177 [Clostridium difficile 630]
ATTCAGATATAGGCAATATTAGATAAATCTAATGACGCAAAACTATAGGGACTAAAATCTTTATGTAATAAAGGTCATGTCAGCCAGTTGCCAAA
>CD2830 Score=68.7 Pos=-186 [Clostridium difficile 630]
AAATTAAATGAGGCAAAACTAGGGAAACCTAGTCACGCAAAGCTATAGGGGCTAAAGTTTAGTAAACCATGCCAGCCAGTTGCCGAA
>CD1424(CD2309) Score=60.7 Pos=-151 [Clostridium difficile 630]
AAAACTAAATCGGCAAAACTAGAGAAATTTAGTGACGCAAAGCTATAGGGACTAACGCTTATAAAATAAACTATGAGTTATGTCAGCCAGTTGCCAAA
>CD2797(CD2797) Score=64.2 Pos=-210 [Clostridium difficile 630]
GAAAATTAAATGGCAAAATTAGGGAAATCTAATGACGCAAAACTATAGGGATTAAAGCTTTTAAAGCCATATCAGCCAGTTGCTAAA
>CD0245(flgB) Score=69.3 Pos=-494 [Clostridium difficile 630]
AACTAAATAGGCAAATCTAGAGAAATCTAGTGACGCAAAGCTATAGGGACTAAGGTTTATATACATAAACTATGTCAGCCAGTTGCCAAAAA
# RNA - Glycine
>CD2276(glyP) Score=65.6 Pos=-277 [Clostridium difficile 630]
TACGGAACTCTGGAGAGACCCATTATGGGCGCCGAAGGGGCAAGGCTTTTATGCTCAATCTCTCAGGCAAAAGGACAGGGATTATCTACC
>CD2276(glyP) Score=34.9 Pos=-358 [Clostridium difficile 630]
AAGATTTTATAGAAGAGTTGCTATATAGCACACCGAAGGAGTAACACTCTCAGGTACTTTTAAAAGTAGGACTGTAAAATTT
>CD1657(gcv(T/H/P1)) Score=42 Pos=-213 [Clostridium difficile 630]
GATGGGACTCTGGAGAGACTTAAGTTAAGATACTATAAGTCACCGAAGAAGCAAAATAATATTAAATTATTAAATCTTTCAGGTATACAAACAGGGATATATAGGC
>CD1657(gcv(T/H/P1)) Score=53 Pos=-313 [Clostridium difficile 630]
TGAGATTAGCGAGAGAGTCCTTTATACGAAAAGGCGCCGAAGAAGAAATTTAAGAAATGCCAATTTTTAGAGAAGCTTTCAGGCAAAAATATCGCTAATTG
>CD2357(grdX) Score=47.1 Pos=-215 [Clostridium difficile 630]
GATGAAGAGTATGGGAGACTGCTTTATAAAAAGCGACCGAAGGGACAAGTTTAATCTTACTTACCCAAAAGATTAGATGAAATTCTCAGGTAAAGGTGACTGTACTTGGACG
# RNA - L10_leader
>CD0063(rplJ) Score=73.5 Pos=-170 [Clostridium difficile 630]
AAAAAAGAATAGATTTGCCGTAGATAGTGGGTGCGAGAGCTTAATATCCCGCCGAGGTTTTAGATAAATTGAGATTACTAAAGCTTTTGATGTCTACTTTTGGCAACAAAAGCTTTTTATAATGTTGCGG
# RNA - L19_leader
>CD1257(rplS) Score=22.2 Pos=-65 [Clostridium difficile 630]
GGGCGTTCCTCTGTTTACACTGGTCGGGTAGTTAAGAACGTCTATG
# RNA - L20_leader
>CD0685(infC) Score=31.9 Pos=-163 [Clostridium difficile 630]
AAACAAAGAAGAAGTCCGCTTCTCACCTTACGCCGGAGGTTAGTAAGGTAAATATAAGTTAAAGCTTAATTTTAATTTAA
# RNA - L21_leader
>CD1161(rplU) Score=33 Pos=-87 [Clostridium difficile 630]
AATAATTGTAATGCCGCACAGTAAAGGTTTAAATCTTCAAATGAAGTACCTTGTACTGGCGAGTTTGAGGCCGAGGAG
# RNA - Lysine
>CD1655(lysW) Score=101.8 Pos=-319 [Clostridium difficile 630]
AGAAGGGTAGAGGCGCAATAATCTATCAGTACTAATAAGGAGTTAAGCACAGAGAGTTATTAGGAAAGGAGATATTGCCGAAGTTTTATAATCGATGCTTTAAGATTATATTGCTGGGGGTACATAGAAAATATGTACAACTGTCACAGGTTTATTTGTGGTGAGCTATCATTTAAGG
>CD3224(asd) Score=99.8 Pos=-346 [Clostridium difficile 630]
CCTAGGGTAGAGGTAGCTGTAACTAAGAGTATCCAATAGTAGCTGGCAGGTGTTAATGATTGGAAAAAGGATTTACAGCCGAAGAAAATATTTCTTGCAATAATATTTTCTGGGATTGCACATAACATGTGTAATACTGTCACTTATTTTTGTAGGTGATGAGCTACAGGGTTTAC
>CD2054(lysC) Score=100.5 Pos=-251 [Clostridium difficile 630]
AGCCTAGGGTAGAGGTAGCTGTATTCAATAGTATTCAATAGGAGCTGGTAAGCGTTGATAATTGATGAAAGGGTATATAGCCGAAGAAATTTTGTTGACGGACAAATTTTCTGGACTTATGCAGAATATGCATAAGGCTGTCACTTTTAAAGTGGTGAGCTACAAGGTTA
>CD3100(COG1288) Score=111.9 Pos=-309 [Clostridium difficile 630]
AGATTGAGGTAGAGGTTGCATTTACTAAGATTAATATTGAAGAGGTTGGAAACCAATGAGGCAATATAAAAGGAGTAAGTGCCGAAGTGCTAGTGTCCGAAGCTAGTGCTGGGACTGTATTTAATAGGTACAGTACTGTCATCAAAATTATCCCGAATTTTGATGGAGAGCTATCTTAAAC
# RNA - PreQ1
>CD1682(iunH) Score=44.3 Pos=-143 [Clostridium difficile 630]
CTGTACTTGTTCGAGAACTCCAAGTATAAAAAACTAAGGAATTAT
# RNA - Purine
>CD2704(pbuO) Score=69.5 Pos=-173 [Clostridium difficile 630]
AAAAACAAATAGAAAATGTTCATATAATATTAGTAATACGGTCTAATAGTTTCTACAAACTCACCTTAAATGGGTTTTCTATGAATAGAATGTCAACTCTGAA
>CD2107(pbuO) Score=66.6 Pos=-175 [Clostridium difficile 630]
ACATATAATTTTGACAATATGGGTCATAAGTTTCTACCGGAATACCGTAAATATTCTGACTATG
>CD2330(xpt) Score=69.9 Pos=-285 [Clostridium difficile 630]
GGAATAAATTAATATATTTACCTGTATATGTTTGATAATATGGTTCAAATGTTTCTACTAAGCTACCATTAATAGCTTGACTACAGGAGTGAAGAAGATATAG
>CD0198(guaA) Score=91.2 Pos=-321 [Clostridium difficile 630]
ATATAAAATATAAACTCACTCGTATATGCTCAGAAATATGGTCTGAGAGTCTCTACCAAGATACCGTAAATATCTTGACTATGAGTGAAATTATTATACCAAA
# RNA - PyrR
>CD3592(pyrF) Score=52 Pos=-146 [Clostridium difficile 630]
AAAGTCTTTTAAACTAGTCCAGAGAGACTGGGAAAGATATCTCATAGCTAATGAATAGAGTTATGTATAGATAAAATCCTTATGCCTCTTTTGGTGTGAGGATTTTTTTAT
>CD3592(pyrF) Score=32.6 Pos=-261 [Clostridium difficile 630]
AAATTCCTTAAAGTAGTCCAGAGAGACTAAAGGGTTATAGATAATGTTAGTATATAACCTCTAGTAAATCTTCTAGAGGTTTTTGATG
>CD0184(pyrB) Score=27.8 Pos=-46 [Clostridium difficile 630]
ATACTTTTAATTTTAGTTCAGAGAGGCTAAAAAAGGAGGACGAAAGATGTTAAAATCAAGAAATTTAATCCAACCAGAAGACTTTTCAAT
# RNA - SAM
>CD1825(metY) Score=87.3 Pos=-211 [Clostridium difficile 630]
TCTTATCCAGAGAGGTGGAGGGACTGGCCCTATGAAACCCGGCAACCAGTATATTTATATACATTGGTGCTAAATCCTGCGGCGAAAGCTGAGAGATGAGTATA
>CD1166(hom) Score=91 Pos=-208 [Clostridium difficile 630]
TCTTATCAAGAGTGGCAGAGGGACTGGCCCTGTGAAGCCCGGCAACCAGTATATTTAATTATACATTGGTGCTAAATCCTGCAGCATTTATGCTGAAAGATGAGTATA
>CD1489(metN) Score=91.2 Pos=-211 [Clostridium difficile 630]
TCTTATCAAGAGTGGTGGAGGGACTGGCCCTTTGAAACCCGGCAACCAGTATATTTTATATACATTGGTGCTAAATCCTGCAACTAATATAGTTGATAGATGAGTATA
>CD0130(metK) Score=95.6 Pos=-239 [Clostridium difficile 630]
CCTTATCAAGAGAGGCTGAGGGATAGGCCCTGTGAAGCCCAGCAACCACCCAAATGGGAAAAGGTGCTAATTCCTACAAGACAAAAGTCTTGAAAGATGAGGTCA
>CD3598(rhc) Score=33.3 Pos=-183 [Clostridium difficile 630]
ATACTTATCAAGAGTTAGGGGAGAGAGTTAGCTCAGTGATCCTATACCAACCTTTTATCAGGTGGTCCTGCTAACAACGATGAGAT
>CD1653(metQ2) Score=90.5 Pos=-219 [Clostridium difficile 630]
CTTCTTATCCAGAGTGGTGAAGGGACTGGCCCTATGAAACCCAGCAACCAGTATATTTTTATATACATTGGTGCTAAATCCTGCAGTATTATACTGAAAGATGAGTC
# RNA - T-box(Ala)
>CD1282(alaS) Score=125.2 Pos=-305 [Clostridium difficile 630]
CAAATACAGTGATAAGGAATAGTAAAATATTTGATGTCTTACAGAGAGAGGGAAATGCTGGAAGCCCTTAGAATATGATATTTGAAGCAGCCTTTTAGTAGCAATCTTGAACAATTTATCTTTTATAAAGAAGATTTAAGTAGAGATTGACGGTAGTTACGTTATAGCTAAGGTTTTCCGAAGATATCATACTTTGTATGATAATTAGGGTGGTACCGCGATTGTCCTCGCCCCTATAAA
# RNA - T-box(Arg)
>CD1785(argG) Score=121.2 Pos=-459 [Clostridium difficile 630]
TAAATCCTGTGAGAAAGAGAGTAACTTCTATGTGTTTTATAGAGAGCTGAGGATGGTGGAAGCTTGGCAAATAAGTATTAGTGAAAAGAACTTTGGAGGATACTAATTGAATTTAGTATGTTAGTAGGTAATCTCGCCTTAAGAGAAAGAGTGGATAAGTTTATCTTATCAATTAGAGTGGTAACGCGGATATATTTCGTCTCTTGGTT
>CD2500(argH) Score=121.3 Pos=-290 [Clostridium difficile 630]
TTTAGATTCAGTGAAAAAGAGAGTAGATATAGAGAAAATCTCAGCGAATTGGGGGATGGTGTGAGCCTAATGATAACACTTTATATTGAAAAGAACTTTGGAGAATACTACTTGAAATTCAGTATGGTAGTAGGTAATCTCGCCTTAAGAGAATAGAGTGGGTAAACATTGTTTACCAACTAGAGTGGTAACACGGAATATTTCGTCTCTTGG
>CD2034(argC) Score=23.4 Pos=-167 [Clostridium difficile 630]
CAATAAGAGTGGTACCGCGGAAAATCGCCTCT
>CD2034(argC) Score=112.5 Pos=-468 [Clostridium difficile 630]
TTGAAATCCTGTGAAAAAGAGAGTAGCATAAAGCTAGTTGATAGAGAGCTGGGAATGGTGGAAGCCTAGTAACGAATTTTATTGTGAATAGAGCTTTGGAGGAGATTACCAGAAGTAATAGTATGGTAATTGGTGAATCTCGCCTTAAGAGATTAGAGTGGGTAAGATTATCTTATCAATTAGAGTGGTAACGCGGGTGTATATTCGTCTCTTGG
>CD0750(artP) Score=138.8 Pos=-435 [Clostridium difficile 630]
CAAATCCAATGATAGAGAAAGTAGCATATATGGATTTACAGCGAGTTAGGGGTTGGTGTAAGCCTAGCAATGAAGTCTATGTGAAGAGAGCTCTGGAGGAGATTATCAGAAACTTTAGTATGATAATTGGTTTACCCGCCTTAAGGGATTGAGAGGATAAGTACTTACTTATCAAAAAGAGTGGTAACGCGGATATAATTCGTCTCTTAGCT
# RNA - T-box(Asn)
>CD2245(asnS) Score=119.6 Pos=-311 [Clostridium difficile 630]
GATAAATACTGTGAAGAGAAGAGTAGATATAAAATGTAGTTCTAGCGAGTTGAGGATGGTGAAAGCTCAATACGAGGTTTATATTGAAGAACATCTTGGAGTTTCTAATCGAAAGCTTATTTAGTAAGTAGACTTAGACGGAAGGCACCGTTATAGGCTTTAAGCATTGCTTAACTAAGAGGTCATTATGACAACTAGGGTGGTACCGCGAGAGTAATAGTCTTTCGTCCCTTTA
>CD2695(asnA) Score=116.6 Pos=-306 [Clostridium difficile 630]
CTTAAAGACTTTGAAAGGAAGAGTAGTTATAGAATGTAATTAAAGCGAGTTGGTGATGGTGTGAGACCAATATGAAGTCTATAGTGAAGAACATCCTGGAGTTGCTAACCGAAATTTTAAAAGAGTAGGCTTAGTCGGAACCAAACCGTTATCATATTGGGGTGTATCGAGTAATATCTGTACATTGTGAGCTGGGTTTGAATTTATTTCAAACTAATCAGGGTGGTACCGCGGAAAAGCAACCTTTCGTCCCTTTT
# RNA - T-box(His)
>CD1774(hisX) Score=93.7 Pos=-387 [Clostridium difficile 630]
TAAATGCTAAGAAAAGAAATAGTAAAAGTAGTTAATCTTAAACAGAGAGTTTCCGATTGGTGAGAGGAGCAATAGATTTTACTTTGAACACATCTTTGAGCAGGACTCTGAAAGAGTAGAAATACTTTATTAGGAGATTTCCGGAATCCTTGCACCCGTTATAGTGCTAGAGTATAATAATTTTATTGTACTTAAAGAGGTTAGTGTCGTGAGGCATTAATGAACAGAGGTGGAACCACGAGAGTTAACTCCCGTCCTCTAGCA
# RNA - T-box(Ile)
>CD2618(ileS) Score=113.7 Pos=-326 [Clostridium difficile 630]
TTTAAAAGCGTTGATAGAGACATTTATCTTTAGATAATTTTACAGAGAATTGGGTATGCTGAGAACCAATGAATTTATAAAGATAAAAATCACTCTTGAGCTGCAGGCTGAACGATTAAATTCTACTAAGCTGTGCCGGTTAGTACCGTTATACTATTAGAGTGTTATATGTAGCTAGTATTTAGTTTACATATAGAATTAGGGTGGTAACGCGATTTATAACTCGTCCCTTTG
# RNA - T-box(Leu)
>CD0989(leuA) Score=116.5 Pos=-369 [Clostridium difficile 630]
AAAAAGTGATGAATAGAAGTAGTAAGAACAATGAAACTTTCAGAGAGCTAAAGGATGGTGTGATTTAGTAGTTGATAGTTCTGAACTTGTCTAGGAGCTGTTTTCTAAGATTTAAATCTTAGAATAATCGGAGTAATTCCACGTTATAGGAAATATAGTCATTATAATTATTGTATTGGCTATTACTAAGGGAGCTTTTTAGAAAGCTAAATAGAGTGGTACCGCGAGCAAAACCTCGTCTCTAATTT
>CD2521(leuS) Score=78.6 Pos=-302 [Clostridium difficile 630]
TTGAATAGACTAGAGCAGTAAAAGATTATATTTTTTCAGAGAGTTAGTGGAAGGTGAGAACTAATATTATATAACTTTGAACTTACTAGATTAAAATCTATTCTCCATGGCTGGATTAAAAGCTATCTAAGAGAGTCTATATATGTAGTAGGCTAATTAGGGTGGTACCGCGAAGATTTATCCTCGTCCCTAAA
# RNA - T-box(Met)
>CD3540(metS) Score=104.8 Pos=-331 [Clostridium difficile 630]
ATTACAAGCTATGAAAAGAAGAGTAAATAAAGGTTTTTTCTATCAGAGAGCTAGGTTAGGTGAAAGCTAGTGTCAAAAGCTTTATTGAAGATGGTCTTGGAGCTTTTTATCTGAGCAAGTGTGCTAGGGTAAAACGGTTGGACACGTTATAGTCTACTAAGGTATCTATAAAATGTTTCTACATTTCATGTGAAACATAACTATTATAGATGAATTAGGGTGGTACCGTGAATAATCTCGCCCCTATG
# RNA - T-box(Phe)
>CD0699(pheS) Score=117.1 Pos=-274 [Clostridium difficile 630]
TAAATGCAATGAAAGAGGAAAGTATTTTGATTAAACTTAGTAAAGAGATAAACACCTAGGCTGGGAGTGTTTTCTAAGAGGTCATGAGAAGTTCCCTCTGGAGTAACAGAGCTGAAATTTTACAGTAGGCTTTGACGTCAAAAACGCGTTAAGTTTGTTAGAGGTGGTTTGATGATTTTTAAATTGTTAAACTACTAGGGTGGTACCGCGAAACTATAGCCTTTCGTCCCTAGACA
# RNA - T-box(Pro)
>CD0049(proS) Score=127.9 Pos=-271 [Clostridium difficile 630]
AATTAGCTATGATAAAGAAATAGTAAAATGATGAAATCTTCACAGAGAGAAAACGGTGGTGAGAGTTTTCAAGAGGAAGTCTTTGAACCTGTCTTTTAGCTTAAAGGTATAAAAATCTTTACGGTAGGAACCGTTATATTCCCAAAAGAGAGCTATTCATATAGCTAACTAGAGTGGTACCGCGGAAATTAAACCTTTCGTCTCTATACT
# RNA - T-box(Ser)
>CD0014(serS) Score=132.4 Pos=-330 [Clostridium difficile 630]
AAAAAGCTGTGAAGGAAAATAGTAAAAAACAGATTGTATTCAGAGAATGAGTGGATGGTGAAAACTCATTACAATGGTTTTTGAATCTACTCTAGAGCTTCTAGTTAAAGCTAGACGTTTACCTACGTTATAGGTCTGAGAGGATTATACATTTTAGTATAGTCAATTAGGGTGGCAACGCGGATAAAAGATTTTCGTCCCTTTTAT
# RNA - T-box(Thr)
>CD0574(thrZ) Score=90.6 Pos=-301 [Clostridium difficile 630]
TCATAGTGTTGAAGAGGAAGAGTAGAGTAGAAACCATTCTCAGAGAATTTGGGTCTATGGCTGAGAGCCCATGTAATAGGTCTATTTGAAAACTACCTTGGAGCTGAGCTTATTAGCAGTATTTGTATTTATACTATACGTGAAAGTGCTCGGGTGACGACCTTATAGTCATCAAGAGGGTTGTATATACTTGTATACGCCAACTTGGGTGGAACCGCGAATTAATATCGTCCCAAACAT
# RNA - T-box(Trp)
>CD1988(trpP) Score=87.4 Pos=-415 [Clostridium difficile 630]
ATTAAATCCTATGACAAGGAAGAGTAGTTAAATTTAGGTTCAGTATAGAGAGCTGAGGATGGTGGAATCTTAGCAAGAAAAAATTTGATGAATGGCCCTTAGAGGAATAAATTGAAATCATAGTTTTGAGAGTAGACTTTATCGTCAGTCGCACGTTATAGCGAATAAGGTATGTAAGTACCTGATAATGAGATGTATGAAAATTGAATTTTATATTAATTTTTATATAATTTAGGTGGCAACGCGGATAATCTCCGTCCTATTA
>CD2611(mtnN) Score=86.8 Pos=-284 [Clostridium difficile 630]
ATTAAATCCTGAGATAAGAAATAGTAAATAAATATATTTTTGCACAGAGAATTAAGGATGCTGAGAACTTAATAAAAAGTATTTATTGAATGGGTCTTTGAGGAGTAAAATGAAATGTAATTTAAGATTACAGAGTATTTGATATCGTGTATGCACGTTATAGCATATATTAAGATATATATATTCAATTTTGAGTGTATATAAATTTAGGTGGTACCACGGAAAATATATCCGTCCTATTG
# RNA - T-box(Tyr)
>CD1521(tyrZ) Score=115.3 Pos=-324 [Clostridium difficile 630]
TAAATGCTATGAAGAGAAGAAGTAGGGCTAGATTTTATTTAACAGAGAGTTCCAGTTTGGTGAAATGGAATAAATTGATTTAGTTTGAATACATCTCAGAGCACTATCTCTGAAAGATAACAACCATTAAGAGATATCGGATTAGTACACGTTATAGTACACGAGTATATGTAATTGTACTCTAAGAGATTAATATCGTGAGATATTGATGAACTAAGGTGGTAACACGTAAGCAATGCTTTCGTCCTTTTAAG
# RNA - T-box(Val)
>CD3256(valS) Score=97.6 Pos=-339 [Clostridium difficile 630]
ATTAAAGACTGAGAAGAAGAGGAGTAAGTAAATACTACTAAAAGAGAGGAAAATTCACTGGCTGTAAGATTTTCTAAGTATAAGATTTACTGAATGTAGCTTTGGAGTTTCTAAACTGAACTATAAGTAAGTTTAGACGGTTAGAACCGTTAAATTCTTTGAGAGTCAAAGTTGATAAAATAACATTAACCAATAATTTAATGATATGTTAATGTATTTTAAGCTTTGGAATTAAGGTGGTAACGCGAGCTTTTCGTCCTTTTT
# RNA - glmS
>CD0120(glmS) Score=97.4 Pos=-232 [Clostridium difficile 630]
CACCTTTCTAAGCGCCAGAACTTAGTTATAGACATAATTATTGAGTAATATAGGAACTAAGTTGACGAGGTCAGAGTTAATCGAATTGTCGGCGGATGCTCTGCGGTGTGTTTACCATCGAAAGACTTCTTTAAATAATAGGAGCAATCCTATGGACAAAGGGAAGCCAAAGTAAACTTAT
# RNA - TPP
>CD1702(thiC) Score=70.8 Pos=-252 [Clostridium difficile 630]
ATTAGAGCTAGGGGCGCTAGAATTGGCTAGCTGAGAGATAAAGCCGTAACTTACAAACCCTAATAACCTGATCAAGATAATGCTTGCGAAGGGAAGCTTTTTAATATAATTTT
>CD1980(thiX) Score=52.7 Pos=-496 [Clostridium difficile 630]
ATAATATATTTCGGGGAGCTAATGTGCTGAGAGGAGATTTTATCTCGACCCTTTGAACCTGTTTGGATAATGCCAGTGTAGGGAGACCAGTTAAGATAAAA
>CD1599(thiD) Score=66.8 Pos=-191 [Clostridium difficile 630]
AAAATAGCTAGGGGAGCCAAGAGCTGAGAGGTATACCGACCCTTACACCTGATCTGGATAATACCAGCGTAGGAAAGCTTAGTAAAAATTCAAG
# TF - NiaR: CD0012
>CD2372(nadA) Score=6 Pos=-43 [Clostridium difficile 630]
TACAGGTGTATATACACTAGTA
>CD2256(niaY) Score=4.6 Pos=-80 [Clostridium difficile 630]
AACATTTGTCTTGTCAGCTGAA
>CD2256(niaY) Score=4.4 Pos=-92 [Clostridium difficile 630]
TTTTAGTGAAATAACATTTGTC
# TF - Rex: CD0171
>CD2354(grdE) Score=5.5 Pos=-264 [Clostridium difficile 630]
TTGATAAATTATTAACAT
>CD2354(grdE) Score=4.5 Pos=-187 [Clostridium difficile 630]
TTGTTAAAAAAATAATTT
>CD2707(CD2707) Score=5.7 Pos=-34 [Clostridium difficile 630]
ATGTTAATAAATTAACAA
>CD2540(noxE) Score=5.2 Pos=-112 [Clostridium difficile 630]
ATGTTAAATAAATAACTA
>CD1170(PF09861) Score=4 Pos=-113 [Clostridium difficile 630]
TTGTTATAAAATAAATTA
>CD1054(bcd2) Score=5 Pos=-193 [Clostridium difficile 630]
TTGATTTTAAATTAACAA
>CD1623(fprA) Score=5.4 Pos=-63 [Clostridium difficile 630]
TTGTTTAAAATATAACAA
>CD2344(CD2344) Score=4.6 Pos=-190 [Clostridium difficile 630]
TTGTTAATTAAATCATAA
>CD2344(CD2344) Score=5.4 Pos=-129 [Clostridium difficile 630]
ATGTTAATTTAATAACAA
>CD2344(CD2344) Score=5.2 Pos=-66 [Clostridium difficile 630]
TTGTTAATTTAATAACGA
>CD2966(adhE) Score=5.1 Pos=-146 [Clostridium difficile 630]
ATGTTAAAAAAATAACTT
>CD2966(adhE) Score=5.6 Pos=-103 [Clostridium difficile 630]
ATGTTAATAAATTAACAT
>CD0171(rex) Score=4.6 Pos=-96 [Clostridium difficile 630]
TTGATATAATATAATCAA
# RNA - ykkC-yxkD
>CD0488(ykkD) Score=84.6 Pos=-175 [Clostridium difficile 630]
ATAGAGTTTTATAGGGTTCCGCAATTATTAATGATTGGTTTGGTCCGAGATAAAACCCACAACATAGTTTTTGTTGTGAACACGGAAGGACAAAAACCTGGGAGATAT
>CD2392(COG3382) Score=81.9 Pos=-159 [Clostridium difficile 630]
TAATTTAGTTTTCTAGGGTTCCGCATTTTATAATGGTCAGGTCCAAGAGAAAACGCACAATTGTTGTGTACACGGAAGGATAAAAGCCTGGGAGAT
# RNA - yybP-ykoY
>CD2503(atcL) Score=66.9 Pos=-238 [Clostridium difficile 630]
ATAACTACTCGAAGGGGAGTAGCTTACACGAAAGTGGTAATTAATCGTCAAGACAGTAGAAATACTCGGTTAATTAGCAAGGGATTCCTTGATAGCAAGACCTTCAAAATAAGC
# TF - CcpA: CD1064
>CD1477 Score=4.7 Pos=-51 [Clostridium difficile 630]
AAGATAACGATTGCTT
>CD0853(oppB) Score=4.1 Pos=-197 [Clostridium difficile 630]
AATAAAATAATTTGAT
>CD0854(oppC) Score=4 Pos=-305 [Clostridium difficile 630]
AGCAAAAGGTTTAAAT
>CD0530 Score=4.1 Pos=11 [Clostridium difficile 630]
TAAAAAACATTTTATT
>CD0395(hadA) Score=4.9 Pos=-11 [Clostridium difficile 630]
AGGAAAACGTTATGCT
>CD0530 Score=4.1 Pos=-79 [Clostridium difficile 630]
AGGAAAACGTATTATA
>CD0850 Score=4 Pos=169 [Clostridium difficile 630]
TTGAAAATGTTTTGGT
>CD2795(CD2795) Score=4.5 Pos=12 [Clostridium difficile 630]
AAAAAAATATTATCAT
>CD2485(CD2385) Score=4 Pos=221 [Clostridium difficile 630]
TAGAACTCATTTTGAT
>CD0209(CD0209) Score=4.1 Pos=0 [Clostridium difficile 630]
ATGAAAAAGTTACCAA
>CD2514(tdcB) Score=4.5 Pos=-94 [Clostridium difficile 630]
TAAAAATCGTTTACAT
>CD2854(dltD) Score=4.3 Pos=184 [Clostridium difficile 630]
GAGAAAAGGATATTAT
>CD0830 Score=4.2 Pos=-269 [Clostridium difficile 630]
AAGAAAAAATTATATA
>CD0201 Score=4.5 Pos=78 [Clostridium difficile 630]
GAGAAAATGTTTACAG
>CD0394(ldhA) Score=4.3 Pos=-207 [Clostridium difficile 630]
AAAATAACAATTTCTT
>CD0394(ldhA) Score=4.6 Pos=-319 [Clostridium difficile 630]
CAAAAAAAGTTTTCAT
>CD1336(malX) Score=3.9 Pos=-141 [Clostridium difficile 630]
TTGAAAAAATTTACAG
>CD1387 Score=4.2 Pos=-127 [Clostridium difficile 630]
AAGAACAGATTTTGCT
>CD1322(dapG) Score=4.1 Pos=-124 [Clostridium difficile 630]
AGAAAAAGGATTTTTT
>CD0576(virS) Score=4.9 Pos=93 [Clostridium difficile 630]
GAGAAAAGGATTTCTA
>CD0742(eutH) Score=4.2 Pos=-75 [Clostridium difficile 630]
GGGAAAACGATACCAA
>CD2625(CD2625) Score=4.8 Pos=17 [Clostridium difficile 630]
AGGAACAGGTTTACTT
>CD3244(prdA) Score=4.9 Pos=-294 [Clostridium difficile 630]
GAGAAAATGTTTACAA
>CD2879 Score=5 Pos=-127 [Clostridium difficile 630]
TAGATAAGGTTTTCTT
>CD2693(CD2693) Score=4 Pos=3 [Clostridium difficile 630]
AAGAAAAAAATAGGTT
>CD1657(gcvPB) Score=4.1 Pos=-493 [Clostridium difficile 630]
GTGAAAATGTTATTTT
>CD2355(trxA2) Score=4.2 Pos=-6 [Clostridium difficile 630]
AAGAAAATGTTAGATT
>CD3664(CD3664) Score=5.4 Pos=-31 [Clostridium difficile 630]
AAGAAAACATTTTCAT
>CD2354(grdE) Score=4.4 Pos=-211 [Clostridium difficile 630]
AGAAAAAGGTTTTTAT
>CD3649(rlmH) Score=4.6 Pos=69 [Clostridium difficile 630]
AAGAAAAGGCTTTCTA
>CD2429(porA) Score=4 Pos=-10 [Clostridium difficile 630]
GAGAAAAGGTATGCAA
>CD2173 Score=4 Pos=55 [Clostridium difficile 630]
GAGAAAAAATTATAAA
>CD2357(grdX) Score=4.5 Pos=197 [Clostridium difficile 630]
AGGAAATCGTTTGGAT
>CD0394(ldhA) Score=4.7 Pos=-130 [Clostridium difficile 630]
GGGAAAACAATTTCAA
>CD3175(cggR) Score=4 Pos=-80 [Clostridium difficile 630]
AAAATAAAAATATCTT
>CD3175(cggR) Score=4.2 Pos=108 [Clostridium difficile 630]
AGGAGAACATTATCAA
>CD2884(licB) Score=5.2 Pos=-187 [Clostridium difficile 630]
ATGAAAAAGTTTTCTT
>CD3218(CD3218) Score=4.3 Pos=253 [Clostridium difficile 630]
GAGTTAACGTTTTCAA
>CD2347(CD2347) Score=3.8 Pos=-31 [Clostridium difficile 630]
AAGATAAAATTTATTA
>CD2347(CD2347) Score=4.3 Pos=175 [Clostridium difficile 630]
CAGAAAAGGTTTGCAA
>CD2344 Score=4.3 Pos=-153 [Clostridium difficile 630]
AAGATAAAATTTTTTT
>CD2702(brnQ) Score=4.8 Pos=-105 [Clostridium difficile 630]
GGGAAAACGTTAACAA
>CD2625(CD2625) Score=5.1 Pos=-60 [Clostridium difficile 630]
AGGATAACGTTATCAT
>CD2481(ung) Score=4.3 Pos=46 [Clostridium difficile 630]
TTGAAAAAGATTACTA
>CD1536(CD1536) Score=4.3 Pos=232 [Clostridium difficile 630]
AAGAAAACGATTTTGT
>CD1586 Score=5.1 Pos=112 [Clostridium difficile 630]
TAGAAAAGGTTATCAT
>CD1768(CD1768) Score=5.1 Pos=-51 [Clostridium difficile 630]
GAGAAAAGGTTTTGTT
>CD1893 Score=4.3 Pos=-153 [Clostridium difficile 630]
TAGAAATCGTTTAATT
>CD2281 Score=3.9 Pos=-11 [Clostridium difficile 630]
AGGAAATTATTATGAA
>CD2600(cstA) Score=5 Pos=-68 [Clostridium difficile 630]
TGGAAATAGTTTTCTT
>CD0854(oppC) Score=3.6 Pos=-184 [Clostridium difficile 630]
GAAAAAGTTTTTTCTT
>CD0679 Score=4.2 Pos=32 [Clostridium difficile 630]
AAGAAATTATTTTGAA
>CD0854(oppC) Score=3.8 Pos=-186 [Clostridium difficile 630]
TTGAAAAAGTTTTTTC
>CD0679 Score=4.2 Pos=-66 [Clostridium difficile 630]
AGGAAATCGTATGCAT
>CD0298(rbsR) Score=4.3 Pos=-27 [Clostridium difficile 630]
AGTAAAACGGTTTCCT
>CD0279A Score=4.2 Pos=-370 [Clostridium difficile 630]
AAGAAAACGTTATTAC
>CD0279A Score=3.9 Pos=-325 [Clostridium difficile 630]
AATAAAAAGATTTTTA
>CD2241(nanE) Score=5.6 Pos=-73 [Clostridium difficile 630]
AAGAAAAAGTTTTCAT
>CD1386 Score=4.2 Pos=-146 [Clostridium difficile 630]
AAGAAAAGATATTGTT
>CD1137(rnfC) Score=3.8 Pos=-184 [Clostridium difficile 630]
ATGAAAAGGATTGTTT
>CD1336(malX) Score=4.6 Pos=-39 [Clostridium difficile 630]
TAGAAAACGTTTTAAA
>CD1338(glvG) Score=4.2 Pos=-142 [Clostridium difficile 630]
ATGAAAAAAATTACAA
>CD2111 Score=4.2 Pos=-6 [Clostridium difficile 630]
TAGAAAATGTTTGCAG
>CD1893 Score=5.1 Pos=-76 [Clostridium difficile 630]
TATAAAACGTTTTCTT
>CD1935(spoVS) Score=4.4 Pos=-143 [Clostridium difficile 630]
AAATAAAGGTTTTCTT
>CD1385 Score=4.4 Pos=-110 [Clostridium difficile 630]
AAGAAAGCGTTTTGAA
>CD2327(gatA) Score=5.3 Pos=-114 [Clostridium difficile 630]
GGGAAAACATTTTCTT
>CD2283 Score=4.3 Pos=-71 [Clostridium difficile 630]
TAGAAAAAAATATCAA
>CD1214(spo0A) Score=3.9 Pos=-16 [Clostridium difficile 630]
AAGAAGATGTTTTTTA
>CD1214(spo0A) Score=4.3 Pos=-41 [Clostridium difficile 630]
TGTAAAAAGTTTAGTT
>CD1214(spo0A) Score=3.8 Pos=-134 [Clostridium difficile 630]
ATTAAAAAATTTTATT
>CD2280 Score=3.9 Pos=-101 [Clostridium difficile 630]
GAAAAAACATTTTATA
>CD3076(tagK) Score=4.8 Pos=-68 [Clostridium difficile 630]
GTGAAAAGATTTTCAT
>CD1321 Score=4.8 Pos=25 [Clostridium difficile 630]
AGGAAATAGTTAACTT
>CD1387 Score=3.9 Pos=-55 [Clostridium difficile 630]
TCGAAAAAAATAACTT
>CD0855(oppA) Score=3.8 Pos=-302 [Clostridium difficile 630]
AGGAATTGGTTTACCA
>CD0679 Score=4.7 Pos=-168 [Clostridium difficile 630]
ATGATAACATTTTCTT
>CD0580(gapN) Score=4.1 Pos=-75 [Clostridium difficile 630]
AAAGAAATGTTTACAT
>CD0580(gapN) Score=4.8 Pos=-123 [Clostridium difficile 630]
AGAAAAACGTTAACTT
>CD0770(spoIIAA) Score=4.5 Pos=88 [Clostridium difficile 630]
AAGAAATAGATAACTT
>CD2791(CD2791) Score=4.7 Pos=-131 [Clostridium difficile 630]
AAGAAAAAGTTTATAT
>CD2756(ptsH) Score=4.2 Pos=-55 [Clostridium difficile 630]
AGGAAAACAATTTTAA
>CD0177(CD0177) Score=4.1 Pos=-88 [Clostridium difficile 630]
TGAAAAAATTTTACTT
>CD0183(CD0183) Score=4.1 Pos=3 [Clostridium difficile 630]
AAGAAAAAGATATTAA
# TF - AgaR: CD3452
>CD3451(agaZ) Score=5.9 Pos=-106 [Clostridium difficile 630]
AAATTGGTAATAACCACTTT
>CD3451(agaZ) Score=5.9 Pos=-251 [Clostridium difficile 630]
TAAGTGGTTATTACCACAAT
>CD3452(agaR) Score=5.9 Pos=-182 [Clostridium difficile 630]
AAAGTGGTTATTACCAATTT
>CD3452(agaR) Score=5.9 Pos=-37 [Clostridium difficile 630]
ATTGTGGTAATAACCACTTA
>CD3449(agaS) Score=6.1 Pos=-246 [Clostridium difficile 630]
TTAGTGGTAATTACCACTTT
>CD3449(agaS) Score=5.1 Pos=-53 [Clostridium difficile 630]
AAAGTGGGTATAACCTCATT
# TF - TreR: CD3090
>CD3090(treR) Score=4.3 Pos=-83 [Clostridium difficile 630]
TACATGTCTAAACACATT
>CD3090(treR) Score=4.5 Pos=-59 [Clostridium difficile 630]
AATTTGTTCATATCAGTT
>CD3091(treA) Score=4.5 Pos=-52 [Clostridium difficile 630]
AATTTGTTTGAACATATT
>CD3091(treA) Score=4.2 Pos=-116 [Clostridium difficile 630]
TATATGTTTATACAAATA
>CD3090(treR) Score=4.5 Pos=-296 [Clostridium difficile 630]
TATTTGTTTAAACAAATT
# TF - CD1503: CD1503
>CD1503(CD1503) Score=6.8 Pos=-47 [Clostridium difficile 630]
TATAGTTAATTAGTTGAGTAACTAACTAAT
# TF - CD0652: CD0652, CD2023
>CD2023(CD0652) Score=7.4 Pos=-48 [Clostridium difficile 630]
TTTATATAATGTGTATATACTATATATACAATTTAAGGA
>CD0652(CD0652) Score=5.2 Pos=-60 [Clostridium difficile 630]
AGTGTATAGTGTGTATATAATAACATCACACTGAAAATG
# RNA - FMN
>CD3299(ribZ) Score=97.5 Pos=-289 [Clostridium difficile 630]
TTTTTCTTCATAAACGGGTGAAATTCCCTATCGGCGGTAAAAGCCCGCGAGCCTTATGGCATAATTTGGTCATATTCCAAAGCCAACAGTAAAATCTGGATGGTAGAAGAAAATAGT
>CD0147(ribU) Score=123.2 Pos=-268 [Clostridium difficile 630]
AAGATCTTCGGGGCAGGGTGAAATTCCCTACCGGCGGTATAGCCCGCGAACTACTTAGGTGGTTGATTTGGTGAGATTCCAAAGCCGACAGTAAAGTCTGGATGAGAGAAGATATTTAT
>CD1700(ribD) Score=118.8 Pos=-254 [Clostridium difficile 630]
ACTTAATCTTCGGGGTAGGGTGAAATTCCCAATCGGCGGTATAGCCCGCGAGCCAAGGTAAAACTTGGTTGATTTGGTTAAATTCCAAAGCCGACAGTAAAGTCTGGATGGAAGAAGATATTT
# TF - CD0683: CD0683
>CD0679(CD0679) Score=6.1 Pos=-119 [Clostridium difficile 630]
AAATGCATATGTATTCATAA
>CD0680(CD0680) Score=6.3 Pos=-37 [Clostridium difficile 630]
TTATGCATACGTATTCTGAA
# TF - BirA: CD3558
>CD0297(bioB) Score=7.8 Pos=-108 [Clostridium difficile 630]
TAGTAAAC----------------GTTGACCA
>CD2971(bioY) Score=8.2 Pos=-132 [Clostridium difficile 630]
ATGTAAAC----------------GTTGACAA
>CD0297(bioB) Score=8.2 Pos=-44 [Clostridium difficile 630]
AAGTAAAC----------------GTTGACAA
# TF - XylR: CD3066
>CD3066(xylR) Score=5.4 Pos=-123 [Clostridium difficile 630]
GTTAGTATATTAAACTAACTTAT
>CD3071(xylS) Score=5.5 Pos=-127 [Clostridium difficile 630]
GTAAGTTAGTTTAATGTACAAAT
>CD3065(xylB) Score=5.4 Pos=-113 [Clostridium difficile 630]
ATAAGTTAGTTTAATATACTAAC
# TF - IscR: CD1278
>CD1278(iscR) Score=5.4 Pos=-53 [Clostridium difficile 630]
GTAATTCCTACTAAAACAGTATGAATTAG
>CD1278(iscR) Score=6 Pos=-98 [Clostridium difficile 630]
TTAATCTTGACAAAATTAGTAGGGTATAA
# TF - CD2285: CD2285, CD2253
>CD2253(CD2285) Score=8.7 Pos=-41 [Clostridium difficile 630]
AAATTGTAT---GTACAATTA
>CD2254(racX) Score=8.7 Pos=-108 [Clostridium difficile 630]
TAATTGTAC---ATACAATTT
>CD2286(azlC) Score=8 Pos=-280 [Clostridium difficile 630]
TAATTGTAT---ACACAATAT
# TF - YhcF: CD1617, CD1606
>CD1240(vanZ) Score=6.9 Pos=-45 [Clostridium difficile 630]
ATTGTATTAATAAAATAATACAAT
>CD1606(yhcF2) Score=6.2 Pos=-39 [Clostridium difficile 630]
AGTGTACTATCGTATTAATACACT
>CD1606(yhcF2) Score=5.9 Pos=-113 [Clostridium difficile 630]
AGTGTATTAATCGTATAATACACT
>CD1617(yhcF) Score=6.4 Pos=-46 [Clostridium difficile 630]
ATTGTATTAACAACTTAATACAAT
# TF - CD3353: CD3353
>CD3354(COG3382) Score=11.9 Pos=-102 [Clostridium difficile 630]
AAAAGTGGTTC-(14)-AAAAATGGAAC-(6)-ATCCACTTTTA
# TF - NagR: CD1009
>CD1009(nagR) Score=5.8 Pos=-36 [Clostridium difficile 630]
AAATTGGTATATACCATATC
>CD1009(nagR) Score=6.1 Pos=-52 [Clostridium difficile 630]
TAATTGGTATATACCAAAAT
# TF - Fur: CD1287
>CD1287(fur) Score=5.3 Pos=-41 [Clostridium difficile 630]
TTTAATAAAGATTATCAAT
>CD1647 Score=5.3 Pos=-91 [Clostridium difficile 630]
ATTGACAATGATAATTATT
>CD1647 Score=5.3 Pos=-85 [Clostridium difficile 630]
AATGATAATTATTATTGAT
>CD1647 Score=6 Pos=-50 [Clostridium difficile 630]
AATGATAATAATTTTCATT
>CD1485 Score=5.4 Pos=-37 [Clostridium difficile 630]
CTTGATATTAATTTTCATT
>CD2878(fhuD) Score=5.8 Pos=-50 [Clostridium difficile 630]
TATGATAATCAATATCATA
>CD1485 Score=6.3 Pos=-74 [Clostridium difficile 630]
ATTGATATTGATTATCATT
>CD1087(zupT) Score=6.3 Pos=-38 [Clostridium difficile 630]
AATGATAATCAATATCAAT
>CD1819(PF11449) Score=6.2 Pos=-71 [Clostridium difficile 630]
ATTGATATTGATTATCAAT
>CD2499(PF10087) Score=5.8 Pos=-37 [Clostridium difficile 630]
AATGAAAATCAATATCAAA
>CD2499(PF10087) Score=5.6 Pos=-43 [Clostridium difficile 630]
AATAATAATGAAAATCAAT
>CD2499(PF10087) Score=6 Pos=-106 [Clostridium difficile 630]
AATGATAATTAATATCAAT
>CD3273(feoA) Score=5.7 Pos=-33 [Clostridium difficile 630]
AGTGATAATGAATTTCATT
>CD1745A(feoA) Score=6 Pos=-33 [Clostridium difficile 630]
TTTGATAATGATTTTCATT
# TF - HcpR: CD2170
>CD2169(frdX) Score=6.1 Pos=-113 [Clostridium difficile 630]
GGGGATATAAAAATCCTA
>CD2170(hcpR) Score=6.1 Pos=-45 [Clostridium difficile 630]
TAGGATTTTTATATCCCC
# TF - NrdR: CD2640
>CD2995(nrdE) Score=5.6 Pos=-186 [Clostridium difficile 630]
ATACTATATGTAGTAT
>CD0108(nrdD) Score=5.6 Pos=-32 [Clostridium difficile 630]
ATACAATATATAGTAA
>CD2995(nrdE) Score=4.4 Pos=-154 [Clostridium difficile 630]
TGACTATATGTAGTGC
>CD0108(nrdD) Score=5.4 Pos=-64 [Clostridium difficile 630]
ATACTACATATAGTGG