# TF - NagR: Sde_3042
>Sde_3605(chiA) Score=5.6 Pos=-200 [Saccharophagus degradans 2-40]
TTTGACAACGTTGTCTTT
>Sde_3982(chiD) Score=5.3 Pos=-257 [Saccharophagus degradans 2-40]
AGATACAACGTTGTCATT
>Sde_3982(chiD) Score=5.4 Pos=-288 [Saccharophagus degradans 2-40]
TTTGACAACGTTGTCTAT
>Sde_3035(omp_nag) Score=5.2 Pos=-141 [Saccharophagus degradans 2-40]
TTTGACAACGTTGTCAAA
>Sde_3035(omp_nag) Score=5.6 Pos=-106 [Saccharophagus degradans 2-40]
CATGACAACGTTGTCCAT
>Sde_3041(nagB2) Score=5.7 Pos=-134 [Saccharophagus degradans 2-40]
AATGACAACGTTGTCTCG
# TF - NsrR: Sde_0101
>Sde_0102(nnrS) Score=4.9 Pos=-82 [Saccharophagus degradans 2-40]
AGATGTAATATACATGCATCT
>Sde_0102(nnrS) Score=5.3 Pos=-56 [Saccharophagus degradans 2-40]
AGATGCATAATAAATGTATCT
# TF - BirA: Sde_0915
>Sde_3140(COG1040) Score=9 Pos=-33 [Saccharophagus degradans 2-40]
CTGTCAACC---------------GGTTTACAA
>Sde_3139(bioB) Score=9 Pos=-90 [Saccharophagus degradans 2-40]
TTGTAAACC---------------GGTTGACAG
# TF - NrdR: Sde_3459
>Sde_2458(nrdA) Score=5.4 Pos=-188 [Saccharophagus degradans 2-40]
CCACTATATATAGTGG
>Sde_3460(nrdB) Score=4.8 Pos=-63 [Saccharophagus degradans 2-40]
CACCTATATATAGTGG
>Sde_3460(nrdB) Score=4.4 Pos=-32 [Saccharophagus degradans 2-40]
CAACCACATATAGTTA
>Sde_2458(nrdA) Score=3.7 Pos=-451 [Saccharophagus degradans 2-40]
CCGCATTATCTTGTAT
>Sde_2458(nrdA) Score=5 Pos=-420 [Saccharophagus degradans 2-40]
CCCCCATATATGGTGT
# TF - SahR: Sde_0471
>Sde_0471(sahR) Score=6.8 Pos=-49 [Saccharophagus degradans 2-40]
ATATCAATATTTTTTGATAT
>Sde_2010(metH) Score=6.1 Pos=-42 [Saccharophagus degradans 2-40]
AAATCGAAATATTTTGATAT
# TF - Zur: Sde_1974, Sde_0059
>Sde_0060(znuA) Score=6 Pos=-80 [Saccharophagus degradans 2-40]
GTTATGTTATCATATAACACTTT
>Sde_0059(zur) Score=6.1 Pos=-51 [Saccharophagus degradans 2-40]
AAAGTGTTATATGATAACATAAC
>Sde_1980(yciC) Score=5.6 Pos=-184 [Saccharophagus degradans 2-40]
ATAATGATATCATATATCATATC
# TF - IscR: Sde_1412
>Sde_2438(ydhD) Score=5.4 Pos=-68 [Saccharophagus degradans 2-40]
ATACCCGAGTAAATAACTCAGATTT
>Sde_1412(iscR) Score=6 Pos=-61 [Saccharophagus degradans 2-40]
ATACTTGATTGAAATGCTAGGTTAT
>Sde_0836(erpA) Score=6.1 Pos=-66 [Saccharophagus degradans 2-40]
ATACTTGATTGTTTTAGTCGGTTAA
>Sde_2009(nfuA) Score=5.4 Pos=-38 [Saccharophagus degradans 2-40]
ATAACCGACAAATTTACTAGGTCTT
# TF - NtrC: Sde_0499
>Sde_0502(glnA) Score=5.1 Pos=-273 [Saccharophagus degradans 2-40]
CGCACCACTTCAGTGCA
>Sde_0500(ntrB) Score=4.9 Pos=-307 [Saccharophagus degradans 2-40]
CGCACCATATTGAAGCA
>Sde_0218(ureD) Score=4.5 Pos=-160 [Saccharophagus degradans 2-40]
TGCACAATAATGGTGTT
>Sde_0218(ureD) Score=4.4 Pos=-137 [Saccharophagus degradans 2-40]
CGCGCCCACTTGGTGCG
>Sde_0231(PF09694) Score=5.1 Pos=-193 [Saccharophagus degradans 2-40]
TGCACCATATTTGTGCC
# TF - LexA: Sde_1787
>Sde_2735(recN) Score=5.2 Pos=-43 [Saccharophagus degradans 2-40]
CACTGTATAAATAACCATAC
>Sde_1288(recA) Score=5.2 Pos=-163 [Saccharophagus degradans 2-40]
TACTGTATAAAAAACTATTA
>Sde_1030(imuA) Score=5.7 Pos=-38 [Saccharophagus degradans 2-40]
TACTGTATAGACATACAGCA
>Sde_1787(lexA) Score=5.3 Pos=-41 [Saccharophagus degradans 2-40]
TACTGTATATTCATCCAATC
>Sde_0674(yebG) Score=5.3 Pos=-46 [Saccharophagus degradans 2-40]
TACTGTATACTCGTACAGCA
>Sde_3764(uvrD) Score=4.9 Pos=-61 [Saccharophagus degradans 2-40]
TGCTGTCTATTTATACATGT
>Sde_0425(intIA) Score=5.9 Pos=-36 [Saccharophagus degradans 2-40]
TACTGTATATATAAACATAT
>Sde_1542(topB) Score=5.3 Pos=-30 [Saccharophagus degradans 2-40]
AGCTGTATATAACAACAGTA
# TF - PsrA: Sde_1789
>Sde_3132(acdH2) Score=5.7 Pos=-162 [Saccharophagus degradans 2-40]
ATTTAAACGTTTGTTTTAAT
>Sde_1605(fadB) Score=6.2 Pos=-90 [Saccharophagus degradans 2-40]
ATTCAAACAAGCGTTTGAAT
# TF - Sde_3525: Sde_3525
>Sde_3525(Sde_3525) Score=5 Pos=-69 [Saccharophagus degradans 2-40]
CACTGTATTACTTGACCAACACACTA
# RNA - TPP
>Sde_1456(thiO) Score=62.6 Pos=-92 [Saccharophagus degradans 2-40]
GCTCACTTTGTCGGGGTGCCCCATACTTCTCTTGGGGCTGAGATTAAACCCGTACGACCTGATCAGGCTAGAACCTGCGTAGGCAACAGCATATGAATACCT
>Sde_0368(thiD) Score=64.2 Pos=-207 [Saccharophagus degradans 2-40]
CATTCTTGTCGGGGTGCTAGTTTTTGTGTGCTTTATTTGCGTGCAAAACAGGCTGAGAAAAACCCGTTGACCTGATCCGGCTAGTACCGGCGTAGGGAACGAGAAGAGTTTGGCGCT
>Sde_3405(omp_thi) Score=67.2 Pos=-182 [Saccharophagus degradans 2-40]
GCGCTCCTTAGGGGAGGCTGCGAAGCCTGAGACTAGTACTTATGTGCTTATACCCTTCGAACCTGATCCGGTTAGTACCGGCGTAGGAATAGGATAAAAACTATAGGC
# TF - CueR: Sde_1950
>Sde_1951(copZ) Score=4.6 Pos=-75 [Saccharophagus degradans 2-40]
ACCTTACCACAATGGGAGACA
>Sde_1952(copA) Score=5.2 Pos=-54 [Saccharophagus degradans 2-40]
ACTTTCCCACGATGGCAAGGA
>Sde_1950(cueR) Score=5.6 Pos=-59 [Saccharophagus degradans 2-40]
ACCTTCCTATAATGGGAGGGT
# TF - CadR-PbrR: Sde_1961
>Sde_1960(czcD) Score=6.3 Pos=-57 [Saccharophagus degradans 2-40]
ACTCTATAGTTACTATAGAGT
# TF - ScrR: Sde_3960
>Sde_3964(scrT) Score=6.7 Pos=-102 [Saccharophagus degradans 2-40]
AATTGCAACCGATTGCAATA
>Sde_3964(scrT) Score=6.4 Pos=-124 [Saccharophagus degradans 2-40]
AATTACAAACGATTGCAAAA
>Sde_3963(omp(Scr)) Score=6.4 Pos=-110 [Saccharophagus degradans 2-40]
TTTTGCAATCGTTTGTAATT
>Sde_3963(omp(Scr)) Score=6.7 Pos=-132 [Saccharophagus degradans 2-40]
TATTGCAATCGGTTGCAATT
# TF - MetR: Sde_0637
>Sde_0638(metE) Score=4.2 Pos=-62 [Saccharophagus degradans 2-40]
ATCAATTTTATTCAC
>Sde_0638(metE) Score=5.2 Pos=-93 [Saccharophagus degradans 2-40]
ATGATTAAAATTCAT
>Sde_0637(metR) Score=5.2 Pos=-13 [Saccharophagus degradans 2-40]
ATGAATTTTAATCAT
>Sde_0637(metR) Score=4.2 Pos=-44 [Saccharophagus degradans 2-40]
GTGAATAAAATTGAT
# TF - YjiR2: Sde_3059
>Sde_3058(PF02567) Score=16.4 Pos=-228 [Saccharophagus degradans 2-40]
AACAGTT-(18)-TACAGTT-(12)-AACTGTA-(24)-AACTGTA