# TF - NadQ: Rru_A2601
>Rru_A1434(nadA) Score=6.1 Pos=-78 [Rhodospirillum rubrum ATCC 11170]
ATTTGCTCACTTTGAGCATAA
# TF - NrdR: Rru_A1826
>Rru_A2441(nrdJ) Score=4.7 Pos=-195 [Rhodospirillum rubrum ATCC 11170]
AAGCTAGATCTTGTGG
>Rru_A1444(nrdA) Score=4.7 Pos=-259 [Rhodospirillum rubrum ATCC 11170]
CCACAATATCCGGGGC
# TF - SahR: Rru_A1529
>Rru_A3444(ahcY) Score=7.2 Pos=-70 [Rhodospirillum rubrum ATCC 11170]
ATATAAAGATATCTTTATAT
>Rru_A1718(metE) Score=6.8 Pos=-377 [Rhodospirillum rubrum ATCC 11170]
ATATAAAGATATCTTCATAT
>Rru_A1529(sahR) Score=7.2 Pos=-88 [Rhodospirillum rubrum ATCC 11170]
ATATAAAGATATCTTTATAT
# TF - Zur: Rru_A1911
>Rru_A3702(znuC) Score=6 Pos=-199 [Rhodospirillum rubrum ATCC 11170]
AAAATGTGATGTTATAACGTTTT
# TF - LldR: Rru_A1414
>Rru_A1414(lldR) Score=5.9 Pos=-164 [Rhodospirillum rubrum ATCC 11170]
TTGGTCAAGAAGTATGACCAC
>Rru_A1413(lldE) Score=6 Pos=-241 [Rhodospirillum rubrum ATCC 11170]
GTGGTCATACTTCTTGACCAA
# TF - HutC: Rru_A1294
>Rru_A1303(hutI) Score=3.9 Pos=-92 [Rhodospirillum rubrum ATCC 11170]
TCTTATTATAGACAAGCT
>Rru_A1303(hutI) Score=3.2 Pos=-82 [Rhodospirillum rubrum ATCC 11170]
GACAAGCTTATACAAGAT
>Rru_A1302(hutF) Score=3.1 Pos=-29 [Rhodospirillum rubrum ATCC 11170]
AGCTTGTCTATAATAAGA
>Rru_A1294(hutC) Score=4.7 Pos=-42 [Rhodospirillum rubrum ATCC 11170]
GTCCTGTATAGACAAGAG
# TF - HypR: Rru_A2063
>Rru_A2064(hypO) Score=4.1 Pos=-48 [Rhodospirillum rubrum ATCC 11170]
TTTGGATCCAAT
# TF - IscR: Rru_A2028
>Rru_A2029(cysE) Score=7 Pos=-116 [Rhodospirillum rubrum ATCC 11170]
ATTCTTGACCGATTTTCTCGGACAC
# TF - Irr: Rru_A3788
>Rru_A1789(ccpA) Score=4.3 Pos=-96 [Rhodospirillum rubrum ATCC 11170]
TTCCTAGAGCAATTCCAATAT
>Rru_A2196(bfd) Score=4.8 Pos=-43 [Rhodospirillum rubrum ATCC 11170]
GGTTTTGAGTGGTTTTAATCT
# TF - NifA: Rru_A0993
>Rru_A2271(iscN) Score=4.9 Pos=-125 [Rhodospirillum rubrum ATCC 11170]
TGTCGGAAAGGCGCCA
>Rru_A1009(draT) Score=5.7 Pos=-182 [Rhodospirillum rubrum ATCC 11170]
TGTCGCAAACCCGACA
>Rru_A1009(draT) Score=5.1 Pos=-152 [Rhodospirillum rubrum ATCC 11170]
TGTCGCGGACCCAACA
>Rru_A2897(ahpC) Score=4.4 Pos=-119 [Rhodospirillum rubrum ATCC 11170]
GGTCTGCTACCCGACA
>Rru_A2271(iscN) Score=5.5 Pos=-173 [Rhodospirillum rubrum ATCC 11170]
TGTCGGCTTTCCGACA
>Rru_A0994(nifB) Score=4 Pos=-130 [Rhodospirillum rubrum ATCC 11170]
TGTCGTAGACTCTACA
>Rru_A0994(nifB) Score=4.2 Pos=-169 [Rhodospirillum rubrum ATCC 11170]
TGTCGATATCCCGACC
>Rru_A1010(nifH) Score=5.7 Pos=-192 [Rhodospirillum rubrum ATCC 11170]
TGTCGGGTTTGCGACA
>Rru_A1010(nifH) Score=5.1 Pos=-222 [Rhodospirillum rubrum ATCC 11170]
TGTTGGGTCCGCGACA
>Rru_A2286(nifE) Score=5.4 Pos=-175 [Rhodospirillum rubrum ATCC 11170]
TGTCGTAAACCCGACA
>Rru_A2286(nifE) Score=4.4 Pos=-217 [Rhodospirillum rubrum ATCC 11170]
TGTCCGGCTTGCGCCA
# TF - NtrC: Rru_A1678
>Rru_A2048(potA) Score=3.8 Pos=-114 [Rhodospirillum rubrum ATCC 11170]
CGCCCGTATTTAAGGCA
>Rru_A2048(potA) Score=4.5 Pos=-153 [Rhodospirillum rubrum ATCC 11170]
TGCAAAAATAATGGGCA
>Rru_A1129(amtB) Score=3.9 Pos=-160 [Rhodospirillum rubrum ATCC 11170]
TGCCCGCTTTACGGGCA
>Rru_A2085(glnB) Score=4.7 Pos=-194 [Rhodospirillum rubrum ATCC 11170]
TGCCTATATTTCGGGCA
>Rru_A1676(nifR3) Score=4.6 Pos=-162 [Rhodospirillum rubrum ATCC 11170]
TGCCTAATATTTAACCA
# TF - Fur: Rru_A3767
>Rru_A3164(mntX) Score=4.7 Pos=-74 [Rhodospirillum rubrum ATCC 11170]
ATTAAGAATGAATTGCATA
>Rru_A2395(omp13) Score=5 Pos=-53 [Rhodospirillum rubrum ATCC 11170]
CATGCGAACAAGTCGCATT
>Rru_A1456 Score=4.5 Pos=-113 [Rhodospirillum rubrum ATCC 11170]
CATGAGACGCATTTTCATT
>Rru_A2397(fecI3) Score=4.9 Pos=-103 [Rhodospirillum rubrum ATCC 11170]
AATGATAGTCGTTCGCAAA
>Rru_A2372(fecI2) Score=4.9 Pos=19 [Rhodospirillum rubrum ATCC 11170]
AATGCGAAGCGTTTGCATT
>Rru_A0845(omp11) Score=4.2 Pos=-130 [Rhodospirillum rubrum ATCC 11170]
TATGATAATAAGAAGCATT
>Rru_A1438(fecI) Score=5.2 Pos=-58 [Rhodospirillum rubrum ATCC 11170]
TTTGCGAATAATTCTCAAA
>Rru_A0841 Score=4.6 Pos=-179 [Rhodospirillum rubrum ATCC 11170]
AACGATAATTAATATCATT
>Rru_A2799 Score=5.6 Pos=-194 [Rhodospirillum rubrum ATCC 11170]
AATGAAAGTCATTCGCAAT
>Rru_A0769 Score=4.5 Pos=-76 [Rhodospirillum rubrum ATCC 11170]
TCTGCGTTTCATTCTCAAT
>Rru_A0879 Score=5.4 Pos=-98 [Rhodospirillum rubrum ATCC 11170]
ATTGCAAATGACTTGCAAT
>Rru_A1054 Score=4.2 Pos=-118 [Rhodospirillum rubrum ATCC 11170]
AACGATTATCAATAGCATT
>Rru_A1053(mcp2) Score=4.2 Pos=-126 [Rhodospirillum rubrum ATCC 11170]
AATGCTATTGATAATCGTT
>Rru_A0880(omp10) Score=4.7 Pos=-169 [Rhodospirillum rubrum ATCC 11170]
AACGAGACTTATTAGCAAT
>Rru_A0838(omp10) Score=4 Pos=-104 [Rhodospirillum rubrum ATCC 11170]
CATGCGATTGAGACGCGAT
>Rru_A2321(mcp) Score=4.4 Pos=-58 [Rhodospirillum rubrum ATCC 11170]
AATGCTATTGAATATCGAT
>Rru_A2809(mtr1) Score=3.8 Pos=-61 [Rhodospirillum rubrum ATCC 11170]
AATGAAAATGCATGGCTTT
>Rru_A2763 Score=5.4 Pos=-97 [Rhodospirillum rubrum ATCC 11170]
AATGAGAGTGATTCTCATG
>Rru_A2597(efeU) Score=5.3 Pos=-41 [Rhodospirillum rubrum ATCC 11170]
ATTGATAATTAATCTCATT
>Rru_A2196(bfd) Score=5.2 Pos=-75 [Rhodospirillum rubrum ATCC 11170]
AATGCGATTGACTTGCAAA
>Rru_A2155(exbB) Score=4.6 Pos=-197 [Rhodospirillum rubrum ATCC 11170]
ATTAATAGTCAATTGCATT
# TF - LexA: Rru_A1898
>Rru_A1898(lexA) Score=0.9 Pos=-114 [Rhodospirillum rubrum ATCC 11170]
GAACCAAAGTAGAAC
>Rru_A2819(recA) Score=1 Pos=-68 [Rhodospirillum rubrum ATCC 11170]
GAACAAAAAGAGTAC
>Rru_A3530(dinB) Score=1.6 Pos=-54 [Rhodospirillum rubrum ATCC 11170]
GAACATTTAGGGTAC
>Rru_A2819(recA) Score=4.4 Pos=-104 [Rhodospirillum rubrum ATCC 11170]
GATCTTGTTCTGTTC
# TF - LiuR: Rru_A1994, Rru_A1311
>Rru_A1948(liuA) Score=5.8 Pos=-194 [Rhodospirillum rubrum ATCC 11170]
TTTGACGTTTACGTAAAC
>Rru_A1948(liuA) Score=5 Pos=-188 [Rhodospirillum rubrum ATCC 11170]
GTTTACGTAAACGGAAGA
>Rru_A1835(ivdC) Score=5.8 Pos=-132 [Rhodospirillum rubrum ATCC 11170]
TTTGACGTTTACGTAAAC
>Rru_A1835(ivdC) Score=4.7 Pos=-126 [Rhodospirillum rubrum ATCC 11170]
GTTTACGTAAACGGAAGT
>Rru_A3510(livG) Score=5.7 Pos=-108 [Rhodospirillum rubrum ATCC 11170]
CTTTACGTTTGCGTTAAG
>Rru_A1994(liuR2) Score=5.2 Pos=-26 [Rhodospirillum rubrum ATCC 11170]
CTTGCCCTTTACGTAAAG
# TF - IscR2: Rru_A2574
>Rru_A2574(iscR2) Score=5.7 Pos=-45 [Rhodospirillum rubrum ATCC 11170]
AAAGAGTACCAATTTAGTCCTGATA
# RNA - TPP
>Rru_A2008(thiC) Score=56.4 Pos=-205 [Rhodospirillum rubrum ATCC 11170]
ACCTGTTCCAGGGGGGCCCCGGCAAGGGGCTGAGATACCGATGGCTGAAGGGGGCTTTCCCCGAGGGCGCGCGGTGACCCTTCGAACCTGATCCGGGTCATGCCGGCGAAGGGACGGAACGCGGGCCGGCGCAC
# RNA - FMN
>Rru_A2197(ribB) Score=110.1 Pos=-304 [Rhodospirillum rubrum ATCC 11170]
CTTGTTCTCAGGGCAGGGTGAAACTCCCGACCGGCGGTAATCCTTCCCTTTCACGGGGGGGACAGCCCGCGAGCGCCCTTTGCCGGTGGTGAAGGGGTCCAGCAGATCCGGTGCGAAGCCGGAGCCGACGGTATAGTCCGGATGGAAGAGAACGAGGTG
# TF - FruR2: Rru_A1973
>Rru_A1972(fruB) Score=5.4 Pos=-142 [Rhodospirillum rubrum ATCC 11170]
TTGTGAAATCGTTTTCACTC
>Rru_A1973(fruR2) Score=5.4 Pos=-106 [Rhodospirillum rubrum ATCC 11170]
GAGTGAAAACGATTTCACAA
# TF - HrcA: Rru_A3642
>Rru_A0586(groS) Score=7.4 Pos=-94 [Rhodospirillum rubrum ATCC 11170]
TTAGCACTCGCCGGGTGGGAGTGCTAA
# TF - CadR-PbrR: Rru_A1026
>Rru_A1027(cadA) Score=6.2 Pos=-66 [Rhodospirillum rubrum ATCC 11170]
ATCCTCTAGTCGCTAGAGATT
# TF - PdxQ: Rru_A1925
>Rru_A1926(pdxO) Score=11.1 Pos=-104 [Rhodospirillum rubrum ATCC 11170]
AAGTGGACCCA-(13)-GGCTGGATCTT-(2)-CGCGACCACCT
# TF - PdxQ2: Rru_A3041, Rru_A3760
>Rru_A3041(pdxQ2) Score=7.6 Pos=-43 [Rhodospirillum rubrum ATCC 11170]
TAGATTGTCACGTAACAATTTA
>Rru_A3040 Score=7.6 Pos=-105 [Rhodospirillum rubrum ATCC 11170]
TAAATTGTTACGTGACAATCTA
>Rru_A3759(PF01810) Score=7.7 Pos=-35 [Rhodospirillum rubrum ATCC 11170]
CAAAGTGTCCTATGACAGGTTG
>Rru_A3760(pdxQ2) Score=7.7 Pos=-191 [Rhodospirillum rubrum ATCC 11170]
CAACCTGTCATAGGACACTTTG
# TF - PdxR: Rru_A1143
>Rru_A1142(glyA) Score=12.8 Pos=-151 [Rhodospirillum rubrum ATCC 11170]
AAATGGTCTG-(13)-AAATGGCAGG-(6)-CAGACCATCT
>Rru_A1144(PF03594) Score=13.9 Pos=-115 [Rhodospirillum rubrum ATCC 11170]
AAATGGTCTG-(13)-AAGTGGCTGG-(6)-CAGGCCATTC
# TF - FnrN: Rru_A3322
>Rru_A3332(ccoN) Score=5.7 Pos=-324 [Rhodospirillum rubrum ATCC 11170]
GATTTGATCTAAATCAATGG
>Rru_A3322(fnrN) Score=4.6 Pos=-119 [Rhodospirillum rubrum ATCC 11170]
GGTTTGACCTGGATCAAAAT