# TF - TauR2: SPOA0375
>SPOA0376(COG-MhpC) Score=8.4 Pos=16 [Silicibacter pomeroyi DSS-3]
CTGTCCCTTC------------CTGTCTCTCG
>SPOA0374 Score=8.8 Pos=-96 [Silicibacter pomeroyi DSS-3]
CTGTCACCCG------------CTGTCACTTT
# TF - NsrR: SPOA0186
>SPOA0186 Score=6.4 Pos=-90 [Silicibacter pomeroyi DSS-3]
TAGGTATTTTAAATACCTA
>SPOA0185(cyoA) Score=6.4 Pos=-34 [Silicibacter pomeroyi DSS-3]
TAGGTATTTAAAATACCTA
>SPOA0192(PF01152) Score=5.2 Pos=-65 [Silicibacter pomeroyi DSS-3]
TAGGACTTGAAAATACCTA
# TF - NrdR: SPO1753
>SPO2136(nrdJ) Score=4.6 Pos=-209 [Silicibacter pomeroyi DSS-3]
CCACAAAATCTGGTAG
# TF - Zur: SPO0986
>SPO0987(znuA) Score=5.2 Pos=-65 [Silicibacter pomeroyi DSS-3]
GGCTTGATATGTTATAACATCCC
>SPO0986(zur) Score=5.6 Pos=-45 [Silicibacter pomeroyi DSS-3]
GGGATGTTATAACATATCAAGCC
# TF - HutC: SPO2190
>SPO2191(hutI) Score=4.3 Pos=-48 [Silicibacter pomeroyi DSS-3]
AATTTATGTATACAAATC
>SPO2190(hutC) Score=4.6 Pos=-133 [Silicibacter pomeroyi DSS-3]
TTTATGTCCAGTCATAAA
>SPO2190(hutC) Score=4 Pos=-51 [Silicibacter pomeroyi DSS-3]
TCGATTTGTATACATAAA
>SPO2190(hutC) Score=4.3 Pos=-49 [Silicibacter pomeroyi DSS-3]
GATTTGTATACATAAATT
>SPO2191(hutI) Score=4 Pos=-46 [Silicibacter pomeroyi DSS-3]
TTTATGTATACAAATCGA
# TF - IscR: SPO2025
>SPO2025(iscR) Score=4.1 Pos=-141 [Silicibacter pomeroyi DSS-3]
CTTGACGAATTCCCTCGGG
>SPO0086(irpA) Score=5.2 Pos=-88 [Silicibacter pomeroyi DSS-3]
ACTGACAAATTTAGTCAGA
>SPO0789(hemP) Score=4.6 Pos=-99 [Silicibacter pomeroyi DSS-3]
GGCGACAAAAATAGTCAGG
>SPO3288(fbpB) Score=4.1 Pos=-27 [Silicibacter pomeroyi DSS-3]
TCCGACTAAACTGGTCGAT
>SPO3287(fbpA) Score=4.7 Pos=-50 [Silicibacter pomeroyi DSS-3]
CCCGACTGAAATAATCAGT
# TF - Irr: SPOA0445
>SPO2025(iscR) Score=5.2 Pos=-121 [Silicibacter pomeroyi DSS-3]
ATCTTAGAATGGTTCTAAGTC
>SPO0382(fssA) Score=5.7 Pos=-76 [Silicibacter pomeroyi DSS-3]
TCTTTAGAACCGTTCCAAAGT
>SPO3842(mbfA) Score=5.8 Pos=-32 [Silicibacter pomeroyi DSS-3]
ATCTTGGAATCATTCTAAATT
>SPO0330(ccpA) Score=5.3 Pos=-72 [Silicibacter pomeroyi DSS-3]
ATGTTAGAATGATTCTAATCG
# TF - NagQ: SPO1842
>SPO1841(nagK) Score=5.4 Pos=-21 [Silicibacter pomeroyi DSS-3]
AGGTATTATAAAGGTATT
>SPO1840(murQ) Score=0.2 Pos=-156 [Silicibacter pomeroyi DSS-3]
AATACCTTTATAATACCT
# TF - NtrC: SPO2087
>SPO2089(nifR3) Score=4.7 Pos=-112 [Silicibacter pomeroyi DSS-3]
CGATTAAAAATTAGGCA
>SPO2089(nifR3) Score=4.8 Pos=-20 [Silicibacter pomeroyi DSS-3]
TGCACAAGGATTAGGCA
>SPO3724(glnK) Score=3.9 Pos=-133 [Silicibacter pomeroyi DSS-3]
TGTGCAAAAAATGTGCA
>SPO2294(glnB) Score=4.8 Pos=-144 [Silicibacter pomeroyi DSS-3]
TGCACAATCCTTGTGCA
>SPO2294(glnB) Score=3.9 Pos=-105 [Silicibacter pomeroyi DSS-3]
CGCCCAAAATTGCTGCA
# TF - Mur: SPO2477
>SPO3366(sitA) Score=5.3 Pos=-84 [Silicibacter pomeroyi DSS-3]
CTTGCGAATAATTCTCAAT
>SPOA0445(irr) Score=4.2 Pos=-76 [Silicibacter pomeroyi DSS-3]
GATGAGAATGAAATTCATT
>SPO3366(sitA) Score=5 Pos=-53 [Silicibacter pomeroyi DSS-3]
GTTGCGAATGGTTCTCATA
# TF - ModE2: SPO0700
>SPO0699(modA) Score=5 Pos=-24 [Silicibacter pomeroyi DSS-3]
GATATTTCCGCCCAGACATATC
# TF - LexA: SPO2154
>SPO2034(recA) Score=1.2 Pos=-87 [Silicibacter pomeroyi DSS-3]
GAACAAGAGGTGAAC
>SPO1174(uvrD) Score=1.1 Pos=-113 [Silicibacter pomeroyi DSS-3]
GAACAAGCCGTGAAC
>SPO2154(lexA) Score=-0.3 Pos=-59 [Silicibacter pomeroyi DSS-3]
ACACAAAACAAGAAC
>SPO3117(ruvC) Score=5.1 Pos=-60 [Silicibacter pomeroyi DSS-3]
GTTCCCCTTTCGTGC
>SPO2218(uvrA) Score=5.2 Pos=-81 [Silicibacter pomeroyi DSS-3]
GTTCTCTTTACGTTC
>SPO2034(recA) Score=5.1 Pos=-109 [Silicibacter pomeroyi DSS-3]
GTTCTCTTTTTGATC
>SPO1766(PF06319) Score=5 Pos=-20 [Silicibacter pomeroyi DSS-3]
GTTCACCTATTGTTC
# TF - LiuR: SPO2914
>SPO2914(liuR) Score=6.3 Pos=-87 [Silicibacter pomeroyi DSS-3]
GCTTACGTCAACGTCAAG
# TF - RutR: SPO1780
>SPO2930(cdd) Score=5.1 Pos=-34 [Silicibacter pomeroyi DSS-3]
TTCCGACCAGATGATCAAAA
>SPO0379(pntD) Score=5.1 Pos=-142 [Silicibacter pomeroyi DSS-3]
CTCGGACCATTCGGTCAAAA
>SPO1776(pydX) Score=5.1 Pos=-89 [Silicibacter pomeroyi DSS-3]
TTTTGACCGAAAGATAAATT
>SPO1776(pydX) Score=6.1 Pos=-72 [Silicibacter pomeroyi DSS-3]
ATTTTACCAGTTGATAAAAT
>SPO1780(rutR) Score=6 Pos=-119 [Silicibacter pomeroyi DSS-3]
ATTTGACCAACTGGTCAAAC
>SPO3367(deoC) Score=5.3 Pos=-262 [Silicibacter pomeroyi DSS-3]
TTTTGTCCGAAAGGTAAAAT
>SPO2802(pytM) Score=5 Pos=11 [Silicibacter pomeroyi DSS-3]
AATTGACTGCTCGGTAAAAA
>SPO1781(pydC) Score=6.1 Pos=-64 [Silicibacter pomeroyi DSS-3]
GTTTGACCAGTTGGTCAAAT
# TF - PhnF: SPO0467
>SPO0468(phnG) Score=5.1 Pos=-47 [Silicibacter pomeroyi DSS-3]
TTGTCTAGTTGTATAGTGAA
>SPO0467(phnF) Score=4.8 Pos=-76 [Silicibacter pomeroyi DSS-3]
TTCACTATACAACTAGACAA
# TF - EutR: SPO2602
>SPO2602(eutR) Score=5.1 Pos=-105 [Silicibacter pomeroyi DSS-3]
TGTGTAACATTGGTTACAAC
>SPO2602(eutR) Score=5.3 Pos=-61 [Silicibacter pomeroyi DSS-3]
TCTGTAGACATGATTACAGA
>SPO2603(eutA) Score=5.1 Pos=-10 [Silicibacter pomeroyi DSS-3]
GTTGTAACCAATGTTACACA
>SPO2603(eutA) Score=5.3 Pos=-54 [Silicibacter pomeroyi DSS-3]
TCTGTAATCATGTCTACAGA
# TF - EutR: SPO1690, SPO1148
>SPO1689(yjjS) Score=6.1 Pos=-35 [Silicibacter pomeroyi DSS-3]
CTTGTGTCAATACAAT
>SPO1147(teaA) Score=7.3 Pos=-74 [Silicibacter pomeroyi DSS-3]
ATTGACATAGTACAAT
>SPO1690(eutR) Score=6.1 Pos=-82 [Silicibacter pomeroyi DSS-3]
ATTGTATTGACACAAG
>SPO1690(eutR) Score=6.1 Pos=-29 [Silicibacter pomeroyi DSS-3]
ATTGTCCCAGATCAAA
>SPO1690(eutR) Score=7.4 Pos=-6 [Silicibacter pomeroyi DSS-3]
ATTGTAATGGTACAAT
>SPO1689(yjjS) Score=7.4 Pos=-112 [Silicibacter pomeroyi DSS-3]
ATTGTACCATTACAAT
>SPO1689(yjjS) Score=6.1 Pos=-89 [Silicibacter pomeroyi DSS-3]
TTTGATCTGGGACAAT
>SPO1147(teaA) Score=7 Pos=-96 [Silicibacter pomeroyi DSS-3]
ATTGTCGCGCGACAAT
# TF - PaaR: SPO0743
>SPO0739(paaG) Score=6.4 Pos=-63 [Silicibacter pomeroyi DSS-3]
ATAAACCGAACGGTTGGTCAAT
>SPO0740(paaF) Score=6.4 Pos=-61 [Silicibacter pomeroyi DSS-3]
ATTGACCAACCGTTCGGTTTAT
>SPO0735(paaZ) Score=5.4 Pos=-90 [Silicibacter pomeroyi DSS-3]
ATTGACCGACCGTTCGGTCGCG
# RNA - Cobalamin
>SPO2875(cbtB) Score=119.1 Pos=-222 [Silicibacter pomeroyi DSS-3]
GCTAAATGAAGGGGTCTGGTCCTGCCGGAGCAATCCGGATGCTAAGAGGGAATTTGGTGCGACCGCCCGTCGGTTCAGGCCAAAGCCGCCCCCGCGACTGTAAGCGGTGAGCCTCTGTTCAACCAGCCACTCCCGGGTTCGCCCCCGGGGGGAAGGCGAACAGAGGCACTGACCCGCGAGCCAGGAGACCTGCCAGACAGGCACTGTAACACCG
>SPO2861(cfrX) Score=81.8 Pos=-292 [Silicibacter pomeroyi DSS-3]
CGCATGTCCGCCCTGTTGGTGTCCGGGCAACCGGATGAAAAGGGAATGCGCCAGCGGTTCCGGGACATGATCCCGGGCAGCCGTCAAGCGCAGCCGCCCCCGCGACCGTGACCGGAGAGGGTGCCCAAGCCACTGGCCAAATGGCCGGGAAGGCGGGACATCCGCCAGAGCAGCGCTCTGACATCCGCAAGCCGGGAGACCTGCCAGCACCCGAACTGCAACCGG
>SPO3547(RSP_0787) Score=120.6 Pos=-251 [Silicibacter pomeroyi DSS-3]
GCTACCGCTGGGTCGATGGTTCCCGGTCGTGCATGCGCCGGGATGAAAAGGGAACACGGTGCGGCCCTCTGGCGACAGAGGACCAATGCCGAGACTGCCCCCGCAACTGTAAGCGGTGAGCGATGCCGAAATGCCACTGGCCCCCGGGCCGGGAAGGCCGGCAAAGCCCGGACCCGCAAGTCAGGAGACCTGCCATCGCAACCGTAACTCGAAC
# RNA - serC
>SPO3354(serC) Score=70.7 Pos=-51 [Silicibacter pomeroyi DSS-3]
GGCGGGACACCCCTCCCCAACGAGGGGCGCTTATCTGGAAGGATAGCATTCAT
# RNA - SAM_alpha
>SPO1351(metY) Score=52.1 Pos=-144 [Silicibacter pomeroyi DSS-3]
AGGAACCACGTGGCGATTTGTTACCGGATTGCGGGCCACGCTAAACATCACCGCTAAAAGGTCAGGATGAAAGACCCCC
# RNA - TPP
>SPO0045(thiD) Score=78.2 Pos=-148 [Silicibacter pomeroyi DSS-3]
GCCAACCGTTGGGGTGCCCTGTGTGGGGCTGAGAGGCGCGGGTGCGTCAACCCATCGAACCTGATCCGGGCAATACCGGCGTAGGGAACGGTCTATCGCTATCGGA
# RNA - FMN
>SPO0268(ribH2) Score=102.6 Pos=-231 [Silicibacter pomeroyi DSS-3]
GTGTCGTTCTCAGGGCGGGGCGAAATTCCCCACCGGCGGTATGCGGGGCTTGATCCCGCCAGCCCGCGAGCGGCCCCGGCCCACGTCCGGGGTGTCAGCAGATCTGGTGAGAGACCAGAGCCGACGGTTACAGTCCGGATGAAAGAGAACGCAC
# RNA - SAM-SAH
>SPOA0011(metK) Score=56.5 Pos=-56 [Silicibacter pomeroyi DSS-3]
ACCTGCCACAACGGCTTCCTGGCGTGGCGAGGGAAACCTTCAATGGAGCACT
# TF - HrcA: SPO0009
>SPO0886(groS) Score=7.2 Pos=-86 [Silicibacter pomeroyi DSS-3]
TTAGCACTCGTCAGACCTGAGTGCTAA
# TF - SoxR: SPO0314
>SPO0314(soxR) Score=6.1 Pos=-43 [Silicibacter pomeroyi DSS-3]
TTCTAAACCTAACTTTAGGT
>SPO0313(PF00903) Score=6.1 Pos=-61 [Silicibacter pomeroyi DSS-3]
ACCTAAAGTTAGGTTTAGAA
# TF - CueR: SPO0793
>SPO0794(copA) Score=4.7 Pos=-58 [Silicibacter pomeroyi DSS-3]
ACCTTCCCGTGACTGGAACCC
# TF - BioR: SPO3340
>SPO3339(bioY) Score=4.4 Pos=-64 [Silicibacter pomeroyi DSS-3]
TTATAGATAG
>SPO3339(bioY) Score=4.8 Pos=-23 [Silicibacter pomeroyi DSS-3]
TTATCTATAA
>SPO3340(bioR) Score=4.8 Pos=-13 [Silicibacter pomeroyi DSS-3]
TTATCTATAA
# TF - SPO0590: SPO0590
>SPO0591(dctP) Score=5.6 Pos=-292 [Silicibacter pomeroyi DSS-3]
GCGTGTAAGCGCTTGCATCG
>SPO0591(dctP) Score=6.9 Pos=-270 [Silicibacter pomeroyi DSS-3]
AAATGTAAGCGCTTACATTG
>SPO0590(SPO0590) Score=6.9 Pos=-115 [Silicibacter pomeroyi DSS-3]
CAATGTAAGCGCTTACATTT
>SPO0590(SPO0590) Score=5.6 Pos=-93 [Silicibacter pomeroyi DSS-3]
CGATGCAAGCGCTTACACGC
# TF - CceR (GapR): SPO3684
>SPO3033(zwf) Score=5.5 Pos=-65 [Silicibacter pomeroyi DSS-3]
ACATGTTAGCGGTAACATTG
>SPO2048(zwf) Score=5.6 Pos=-53 [Silicibacter pomeroyi DSS-3]
AAATGTTTGCGCTAACAGTG
>SPO3600(pykA) Score=5.2 Pos=-43 [Silicibacter pomeroyi DSS-3]
GGATGTTTGCGGTAACATAA
>SPOA0276(scrK) Score=3.8 Pos=-48 [Silicibacter pomeroyi DSS-3]
GCCGGTTTGCGCTGAGATGC
>SPO0709(pckA) Score=4 Pos=-172 [Silicibacter pomeroyi DSS-3]
TCTTGGTTGCGCTAAACTAT
>SPO0709(pckA) Score=5 Pos=-151 [Silicibacter pomeroyi DSS-3]
CCTTGGTTGCGCTAACTGCG
>SPO2198(gapA) Score=4.8 Pos=-123 [Silicibacter pomeroyi DSS-3]
AAGCGTTAGCGCAACCGGGG
>SPO2198(gapA) Score=5.4 Pos=-104 [Silicibacter pomeroyi DSS-3]
GCAAGTTTGCGCTAACACCT
>SPO0701(gapB) Score=5.5 Pos=-59 [Silicibacter pomeroyi DSS-3]
TTTTGTTAGCGCTAACAAAT
>SPO1171(pycA) Score=4.4 Pos=-104 [Silicibacter pomeroyi DSS-3]
GGATGCGAGCGATAACATGC
>SPO0349(mdh) Score=4.8 Pos=-130 [Silicibacter pomeroyi DSS-3]
CGCTTTTAGCGCAATCACCC
>SPO3684(cceR) Score=4.6 Pos=-49 [Silicibacter pomeroyi DSS-3]
TGCCGTTCGCGCTAGCATCG
>SPO2474(eno) Score=5.4 Pos=-137 [Silicibacter pomeroyi DSS-3]
CGCTGTTGGCGCAAACAGGG
>SPO2474(eno) Score=4.9 Pos=-117 [Silicibacter pomeroyi DSS-3]
ATGTGTTAGCCCTAACTGCG
>SPO2474(eno) Score=4.9 Pos=-88 [Silicibacter pomeroyi DSS-3]
GCGTGTTAGCGATAGCAGTC
>SPO1899(fba) Score=4.3 Pos=-83 [Silicibacter pomeroyi DSS-3]
GTAGTTGAGCGCTAACATCC
>SPO2197(yedI) Score=5.4 Pos=-99 [Silicibacter pomeroyi DSS-3]
AGGTGTTAGCGCAAACTTGC
>SPO2197(yedI) Score=4.8 Pos=-80 [Silicibacter pomeroyi DSS-3]
CCCCGGTTGCGCTAACGCTT
# TF - Chvl: SPO0710
>SPO0710(chvI) Score=8.2 Pos=-91 [Silicibacter pomeroyi DSS-3]
GATTCG------------GATTCG
# TF - RspR: SPO1722
>SPO1723(uxuA) Score=5.4 Pos=-71 [Silicibacter pomeroyi DSS-3]
CATACTTCCATACTAGTCGG
>SPO1722(rspR) Score=5.4 Pos=-47 [Silicibacter pomeroyi DSS-3]
CCGACTAGTATGGAAGTATG
# TF - HypR2: SPOA0261
>SPOA0261(hypR2) Score=4.1 Pos=-38 [Silicibacter pomeroyi DSS-3]
ATCTGTATCCGAAA
>SPOA0267(hypD) Score=5 Pos=-172 [Silicibacter pomeroyi DSS-3]
TTCTGTATCCAAAA
>SPOA0260(hypH) Score=5.2 Pos=-64 [Silicibacter pomeroyi DSS-3]
TTTTGGATACATTA
# TF - SPOA0336: SPOA0336
>SPOA0336(SPOA0336) Score=6 Pos=-64 [Silicibacter pomeroyi DSS-3]
TAATGGTTGCGCAATCATTT
>SPOA0335(SPOA0335) Score=6 Pos=-81 [Silicibacter pomeroyi DSS-3]
AAATGATTGCGCAACCATTA
>SPOA0336(SPOA0336) Score=6.1 Pos=-87 [Silicibacter pomeroyi DSS-3]
AAATGGTTGCGCAATCATTT
>SPOA0335(SPOA0335) Score=6.1 Pos=-58 [Silicibacter pomeroyi DSS-3]
AAATGATTGCGCAACCATTT
# TF - MetR: SPO3015
>SPO3016(metF) Score=4.8 Pos=-16 [Silicibacter pomeroyi DSS-3]
ATGAAGTTGTCTCAC
>SPO3015(metR) Score=4.8 Pos=-48 [Silicibacter pomeroyi DSS-3]
GTGAGACAACTTCAT
# TF - PdxQ3: SPOA0149
>SPOA0148(PF07690) Score=10.6 Pos=-83 [Silicibacter pomeroyi DSS-3]
AGCGTACT-(1)-GATACAAT-(6)-ATTGTACT
# TF - SPOA0164: SPOA0164
>SPOA0164(SPOA0164) Score=8.7 Pos=-70 [Silicibacter pomeroyi DSS-3]
AGTTACAGT------------------ACTGTACCC
>SPOA0163(mvaA) Score=8.7 Pos=-86 [Silicibacter pomeroyi DSS-3]
GGGTACAGT------------------ACTGTAACT
# TF - SPOA0379: SPOA0379
>SPOA0380(dadA) Score=10.3 Pos=-125 [Silicibacter pomeroyi DSS-3]
GATTGGTCTG-(12)-TATTGGATAT-(6)-CAAGCCAATA
>SPOA0378(COG4948) Score=13.3 Pos=-107 [Silicibacter pomeroyi DSS-3]
AATTGGTCTG-(12)-AAATGGATAT-(6)-CAGCCCGATT
# TF - TauR: SPO3562
>SPO3561(xsc) Score=9.6 Pos=-106 [Silicibacter pomeroyi DSS-3]
CTGGACCTAT-------------CTGGCCCTAA
>SPO0673(tpa) Score=8.9 Pos=-130 [Silicibacter pomeroyi DSS-3]
TTGGACATAT-------------CTGGCCCTAT
# TF - SPOA0375: SPOA0375
>SPOA0374 Score=8.8 Pos=-96 [Silicibacter pomeroyi DSS-3]
CTGTCACCCG------------CTGTCACTTT
>SPOA0376(COG596 (MhpC)) Score=8.4 Pos=16 [Silicibacter pomeroyi DSS-3]
CTGTCCCTTC------------CTGTCTCTCG
# TF - FnrN: SPO3531
>SPO3076(ctaC) Score=5.6 Pos=-162 [Silicibacter pomeroyi DSS-3]
TGTTTGATCCAGATCAAAAA
>SPO2596(hemA) Score=5.1 Pos=-146 [Silicibacter pomeroyi DSS-3]
TAATTGACCCAAGTCAAGGC
>SPO3531(fnrN) Score=5.4 Pos=-32 [Silicibacter pomeroyi DSS-3]
ACCTTGACTCAGATCAAGTA
>SPO1383(ctaD) Score=5.6 Pos=-120 [Silicibacter pomeroyi DSS-3]
ATCTTGATCCAGATCAAACT
>SPO3527(uspA) Score=5.7 Pos=-98 [Silicibacter pomeroyi DSS-3]
GCTTTGATCTGCATCAAGAC
>SPO3532(hemN) Score=5.4 Pos=-52 [Silicibacter pomeroyi DSS-3]
TACTTGATCTGAGTCAAGGT
>SPO2792(ompW) Score=5.2 Pos=-75 [Silicibacter pomeroyi DSS-3]
ATCTTGATCCAGATCAGGGA
>SPO0330(ccpR) Score=5.5 Pos=-96 [Silicibacter pomeroyi DSS-3]
CGCTTGATCCATATCAAAGT
>SPO3526(ccoN) Score=5.7 Pos=-110 [Silicibacter pomeroyi DSS-3]
GTCTTGATGCAGATCAAAGC
>SPO3522(ccoG) Score=5.4 Pos=-80 [Silicibacter pomeroyi DSS-3]
TTTTTGACCCATATCAAAGT