# TF - NsrR: Caul_0854
>Caul_0855(PF09313) Score=4.9 Pos=-34 [Caulobacter sp. K31]
AGATGCATTTGATAAGCATCA
>Caul_0854(nsrR) Score=4.9 Pos=-109 [Caulobacter sp. K31]
TGATGCTTATCAAATGCATCT
# TF - NadQ: Caul_2899
>Caul_4914(nadE) Score=6.2 Pos=-40 [Caulobacter sp. K31]
TTATGCTCATTTTTAGCATAA
>Caul_4717(proA) Score=5.4 Pos=-39 [Caulobacter sp. K31]
TAAGGCTCACTCTGAGCATAT
>Caul_4308(nadA) Score=6 Pos=-117 [Caulobacter sp. K31]
TTTTGCTCAATTTCAGCATAA
>Caul_4308(nadA) Score=6.1 Pos=-32 [Caulobacter sp. K31]
AAATGCTCAGTTTGAGCATAA
# TF - NrdR: Caul_3046
>Caul_4661(nrdA) Score=5.7 Pos=-94 [Caulobacter sp. K31]
CCACAAGATGTAGCGG
>Caul_2560(nrdJ) Score=5.6 Pos=-118 [Caulobacter sp. K31]
CTTCAACATCTTGTGG
>Caul_2560(nrdJ) Score=3.6 Pos=-86 [Caulobacter sp. K31]
ACCCCACATCTATTGA
>Caul_4709(nrdB) Score=3.7 Pos=-87 [Caulobacter sp. K31]
CCACTAGATGCGGCCG
>Caul_4709(nrdB) Score=5.7 Pos=-118 [Caulobacter sp. K31]
CCACAACATGTTGTGT
# TF - SahR: Caul_3410
>Caul_3410(sahR) Score=6.9 Pos=-24 [Caulobacter sp. K31]
ACATAAAGATATCTTTATGT
>Caul_4623(ahcY) Score=5.8 Pos=-91 [Caulobacter sp. K31]
ATATAAAGAAATCCTTATGC
>Caul_0027(metK) Score=6.4 Pos=-83 [Caulobacter sp. K31]
ACATAAACTTATCTTTATAT
# TF - Zur: Caul_0255
>Caul_0194(rplU) Score=5.9 Pos=-174 [Caulobacter sp. K31]
AGACTGTTATATTGTAACACGCC
>Caul_0195(zrpW) Score=6.2 Pos=-35 [Caulobacter sp. K31]
GGCGTGTTACAATATAACAGTCT
>Caul_4694(znuL) Score=6.6 Pos=-62 [Caulobacter sp. K31]
GATATGTTATTTCATAACACTTC
# TF - HutC: Caul_2358, Caul_1300
>Caul_2355(omp) Score=4.9 Pos=-105 [Caulobacter sp. K31]
CAAATGTATATACATAGA
>Caul_1299(hutF) Score=5.8 Pos=-40 [Caulobacter sp. K31]
GATATGTATAGACATATT
>Caul_1298(hutI) Score=5.8 Pos=-64 [Caulobacter sp. K31]
AATATGTCTATACATATC
# TF - IscR: Caul_2586
>Caul_2586(iscR) Score=8.4 Pos=-137 [Caulobacter sp. K31]
ATACTTGACCGCTGCGCTTGGTCTT
# TF - NagQ: Caul_0291
>Caul_0291(nagQ) Score=-0.3 Pos=-108 [Caulobacter sp. K31]
AAGGCCAAAAAAGAACCA
>Caul_0291(nagQ) Score=-0.9 Pos=-203 [Caulobacter sp. K31]
AAGCCCAATTCGATACCA
>Caul_0292(omp_nag) Score=4.5 Pos=-67 [Caulobacter sp. K31]
TGGTATCGAATTGGGCTT
>Caul_0292(omp_nag) Score=4.7 Pos=-162 [Caulobacter sp. K31]
TGGTTCTTTTTTGGCCTT
# TF - NtrC: Caul_2606
>Caul_2957(narK) Score=4.1 Pos=-235 [Caulobacter sp. K31]
TGCTCATGCATCGTGCA
>Caul_2171(glnK) Score=4.9 Pos=-201 [Caulobacter sp. K31]
CGCCCAATATTTGGGCG
>Caul_2852(glnB) Score=4.3 Pos=-141 [Caulobacter sp. K31]
TGCTCAAATTCCAGGCA
>Caul_2957(narK) Score=3.8 Pos=-211 [Caulobacter sp. K31]
TGCCTGTTTGCTGAGCA
>Caul_2604(nifR3) Score=4.9 Pos=-10 [Caulobacter sp. K31]
TGCATATAAAATGAGCA
# TF - Fur: Caul_0013
>Caul_1112 Score=5.1 Pos=-136 [Caulobacter sp. K31]
GATGCGAACCATTCGCATC
>Caul_1111(omp4) Score=5.1 Pos=-45 [Caulobacter sp. K31]
GATGCGAATGGTTCGCATC
>Caul_4040(feoA) Score=3.8 Pos=-35 [Caulobacter sp. K31]
ACTGATAATCGTTCGCAAG
>Caul_0751(bfd) Score=4.5 Pos=-73 [Caulobacter sp. K31]
GCTGCGAGTCAGTTGCAAA
>Caul_2729 Score=4.9 Pos=-88 [Caulobacter sp. K31]
GCTGCGATTGACTCGCAAC
>Caul_2836(nuoA) Score=4.8 Pos=-87 [Caulobacter sp. K31]
GTTGCGACCGTTTCTCAAT
>Caul_3988(PF03929) Score=4.2 Pos=-20 [Caulobacter sp. K31]
TTTGCAAGTCGTTCTCAAG
>Caul_2729 Score=5.1 Pos=-54 [Caulobacter sp. K31]
TTTGAGAATGACTCGCAAC
# TF - ModE: Caul_2731
>Caul_2732(modB) Score=5.4 Pos=-102 [Caulobacter sp. K31]
TTATGTAGTCAAGATACATAT
>Caul_2731(modE) Score=5.4 Pos=-64 [Caulobacter sp. K31]
ATATGTATCTTGACTACATAA
>Caul_1837(modA) Score=6.5 Pos=-89 [Caulobacter sp. K31]
TTAGGCACTTGAACTACATAA
# TF - LexA: Caul_2782
>Caul_4208(PF06319) Score=1 Pos=-26 [Caulobacter sp. K31]
GAACAAAGCTGGAAC
>Caul_4463(imuA) Score=0.4 Pos=-40 [Caulobacter sp. K31]
GAACAAAAGTGGAAC
>Caul_1392(recA) Score=0.5 Pos=-111 [Caulobacter sp. K31]
GAACATGGAACAAAC
>Caul_2808(dnaE) Score=-0.5 Pos=-144 [Caulobacter sp. K31]
GAACAAACAGGCAAC
>Caul_2808(dnaE) Score=-0 Pos=-162 [Caulobacter sp. K31]
GAACAAAAGTGGAAT
>Caul_0179(PF01078) Score=5.4 Pos=-79 [Caulobacter sp. K31]
GTTCGTTTTTCGTTC
>Caul_2782(lexA) Score=5.1 Pos=-38 [Caulobacter sp. K31]
GTTTGCGGTTTGTTC
>Caul_3697(uvrA) Score=5 Pos=-96 [Caulobacter sp. K31]
GTTCGCACCTTGTTC
>Caul_5071(COG5529) Score=4.6 Pos=-53 [Caulobacter sp. K31]
GTTCTATCTTCGTTC
>Caul_1412(nth) Score=5.2 Pos=-31 [Caulobacter sp. K31]
GTTCTCGTTACGTTC
>Caul_1454(lhr) Score=-0 Pos=-33 [Caulobacter sp. K31]
AAACGGAACGGGAAC
# TF - LiuR: Caul_0132
>Caul_1047(etfB) Score=5 Pos=-97 [Caulobacter sp. K31]
CCTTACGCTTACGTCAGG
>Caul_2048(acdL2) Score=5.1 Pos=-101 [Caulobacter sp. K31]
GTTGACGCTAAGGTCATC
>Caul_2048(acdL2) Score=4.4 Pos=-107 [Caulobacter sp. K31]
GTTTACGTTGACGCTAAG
>Caul_0132(liuR) Score=5.1 Pos=-101 [Caulobacter sp. K31]
GTTTACGTAAGCGTTGAC
>Caul_0132(liuR) Score=5.6 Pos=-107 [Caulobacter sp. K31]
GTTGACGTTTACGTAAGC
# TF - PsrA: Caul_3323
>Caul_3321 Score=5.5 Pos=-41 [Caulobacter sp. K31]
CTTCGAACAATCGTTCGAAA
>Caul_0851 Score=5.4 Pos=-28 [Caulobacter sp. K31]
ATTCAAACAAACGTTTAGCG
>Caul_0887(paaI) Score=5.4 Pos=-26 [Caulobacter sp. K31]
GTTCAAACGCTCGTTAGACT
>Caul_1696 Score=5 Pos=-29 [Caulobacter sp. K31]
CGTCAAACATCCGTTCGAGA
>Caul_2153(fadD2) Score=5 Pos=-97 [Caulobacter sp. K31]
GTTCGAACAGACGTTTGCAT
>Caul_4649 Score=5.8 Pos=-40 [Caulobacter sp. K31]
GTTCAAACTATCGTTTGAAT
>Caul_4647 Score=5.3 Pos=-25 [Caulobacter sp. K31]
GATCAAACAGTTGTTTGAGG
>Caul_3341 Score=5.1 Pos=-31 [Caulobacter sp. K31]
AACCAAACACGCGTTTGAGG
>Caul_1059 Score=4.8 Pos=-34 [Caulobacter sp. K31]
AAGAAAACAACTGTTTGGCG
>Caul_0274 Score=5.2 Pos=-35 [Caulobacter sp. K31]
CGCAAAACAAGTGTTTGAAG
>Caul_2048 Score=5.3 Pos=-82 [Caulobacter sp. K31]
TTCCAAACGCTCGTTCGAAC
>Caul_0813(fadB) Score=5.4 Pos=-53 [Caulobacter sp. K31]
CTTCAAACAACCGTTCAAAA
>Caul_4752(fadA) Score=5.4 Pos=-34 [Caulobacter sp. K31]
ATTCAAACTAACGTTTAAAG
>Caul_1447 Score=4.8 Pos=-119 [Caulobacter sp. K31]
TGACGAACGGACGTTTGAAT
>Caul_1349(echH) Score=5.2 Pos=-43 [Caulobacter sp. K31]
GTTCATACGCGTGTTTGAGT
>Caul_3066 Score=5 Pos=-30 [Caulobacter sp. K31]
CCTCAAACAACTGTTCGGGA
>Caul_4412 Score=5 Pos=-30 [Caulobacter sp. K31]
TTTCGAACAAATGTTCGGGA
>Caul_1346 Score=5 Pos=-41 [Caulobacter sp. K31]
AATCAAACAACTGTTTACAA
>Caul_4261 Score=5 Pos=-70 [Caulobacter sp. K31]
ATCCGAACATCCGTTTGACT
>Caul_4897(paaI2) Score=5.8 Pos=-42 [Caulobacter sp. K31]
AGTCAAACAAATGTTTGAAT
>Caul_4071(acdH) Score=5.9 Pos=-45 [Caulobacter sp. K31]
TTTCAAACAAGCGTTTGACA
# TF - VanR: Caul_1138
>Caul_1137(vanA) Score=4.1 Pos=-31 [Caulobacter sp. K31]
ATTGTATACAAT
# TF - PhnR: Caul_2986
>Caul_2987(COG3511) Score=5.9 Pos=-39 [Caulobacter sp. K31]
ATTTTGGTCTATACCAGAAT
>Caul_2987(COG3511) Score=3.9 Pos=-115 [Caulobacter sp. K31]
CAACTGGATCAGACCACTGA
>Caul_2995(omp) Score=5.2 Pos=-35 [Caulobacter sp. K31]
CAACTGGTTCATACCAGTTG
>Caul_2985(Cseg_3202) Score=5.4 Pos=-40 [Caulobacter sp. K31]
GATTTGGTCTAGACCAGAAC
>Caul_2986(phnR) Score=6.4 Pos=-165 [Caulobacter sp. K31]
ATTCTGGTATAGACCAAAAT
# RNA - serC
>Caul_4468(serC) Score=52.6 Pos=-60 [Caulobacter sp. K31]
CCGGCGGGCCACGCCCCCCCAACGGGGCGCTGTCCATCTGTAAGGATGGGAGAC
# RNA - Glycine
>Caul_4387(gcvT) Score=52.5 Pos=-157 [Caulobacter sp. K31]
GTTTAGGAACGCTGGAAAGAGGCAGTCTGAAAAGACTGCCCGCCGAAGGAGCAAGGTCGGTACCCCGACCGAAATCTCTCAGGTCAAAGGGACAGCGGGGGCGAA
>Caul_4387(gcvT) Score=50.4 Pos=-245 [Caulobacter sp. K31]
CTCGACCCACGCGGGAGACATCGGGATTCTGGTCTCGAGGCCGAAGGCGCAACCGCCCCGGAAACGCTCAGGCAAAAGGACCGCGCGGG
>Caul_2543(omp) Score=45.5 Pos=-415 [Caulobacter sp. K31]
GCGTCGAAACGCTGGAAAGCAGGGCGCGTCTGCGTGCGCCCTCGCCGAAGGAGCAAGGCGGCCCGTGTCGATCAGACGGGTTCGCTGAATCTCTCAGGCGCCAAGGACAGCGGGGGTGCG
# RNA - yybP-ykoY
>Caul_3626(COG2119) Score=45.2 Pos=-220 [Caulobacter sp. K31]
CCCGCTCACCTTTGGGGAGTAGCCGCCCGCACCGATCAGTGGGGCCCGTCGTCAACATACTTGCCTTCCTTTCTTGAGTGGGAGGAGGCATGGCGCGGGTGGAGGAAGCAGCAGCTTCCGCGGCGAGACCAATGGCGTCGGT
# RNA - MOCO_RNA_motif
>Caul_3860(moaA) Score=75.8 Pos=-126 [Caulobacter sp. K31]
GATGAAACTCGCTCCGAGCGTCCCGGCCTAACGCGCATCCGCGCCAAGGCCGGGCCGCCGCGCCGGTACGCCGGCAAGGGTGACGGGGGAAACGCCGTCGCCTCCCTTGCTTGGAAAGGAGCCCGCATGGGACGTCTGG
# RNA - mini-ykkC
>Caul_4732(ykkC) Score=46.9 Pos=-128 [Caulobacter sp. K31]
GGCGCGGGGACGACCCCGCGCCTTTTCCTTTTTCTCCGGGGACGGCCCCG
# RNA - TPP
>Caul_3175(thiC) Score=59.1 Pos=-175 [Caulobacter sp. K31]
GTTCACCGGGGGGCCGCTTCGCGCGGCTGAGATTGGGCGTCAGCCCTGACCCGTCGAACCTGATCCGGGTCATGCCGGCGAAGGGAGGGAA
# RNA - Cobalamin
>Caul_2735(btuB) Score=109.8 Pos=-309 [Caulobacter sp. K31]
GTGCAGCTCTCGCGACAGGTTCCTCGAAAGAGGATGAAAAGGGAACTCGGGTGTGAAACCCGGGCTGCCCCCGCAACTGTAAGCGGCGAGCCCGCGCGTCATAAACCACTGGGAGCCTCCTTCGGGAGGCCTCTGGGAAGGCGACGCGCACCGGCATTGACCCGCGAGCCAGGAGACCTGCCCGTCGCGGTCGTCCTTCGTC
# TF - HrcA: Caul_0166
>Caul_4151(groS) Score=7.4 Pos=-88 [Caulobacter sp. K31]
TTGGCACTCGATGGGAGCGACTGCTAA
# TF - ZntR: Caul_2331
>Caul_2331(zntR) Score=4.5 Pos=-40 [Caulobacter sp. K31]
ACCTTGGACCACGGTCCAACCT
# TF - CueR: Caul_2318
>Caul_2321(copZ) Score=5.5 Pos=-28 [Caulobacter sp. K31]
ACCTTGCCATGATGGGAAGCC
>Caul_2311(cueO) Score=5 Pos=-42 [Caulobacter sp. K31]
TCCTTCCCATCATTGGAATCT
>Caul_2317(copA) Score=5.6 Pos=-56 [Caulobacter sp. K31]
ACCTTCCCATGATGGGAGGGA
# TF - CadR-PbrR: Caul_2300, Caul_2322
>Caul_2301(czcD) Score=6.5 Pos=-34 [Caulobacter sp. K31]
ATCCTCTAGTGGCTAGAGGAT
# TF - BglR1: Caul_2062
>Caul_2063(omp(Bgl)1) Score=6.9 Pos=-108 [Caulobacter sp. K31]
TGTTGGAAGCGCTTCCAATG
# TF - BglR2: Caul_2141
>Caul_1420(glcT) Score=5.5 Pos=-69 [Caulobacter sp. K31]
GCTTGACAACGTTGTCACCG
>Caul_2141(bglR2) Score=6.4 Pos=-419 [Caulobacter sp. K31]
AAATGTCAACGTTGTCATTT
>Caul_2141(bglR2) Score=5.9 Pos=-105 [Caulobacter sp. K31]
GCATGACATCGTTGTCGTCC
>Caul_2142(omp(Bgl)2) Score=6.4 Pos=-242 [Caulobacter sp. K31]
AAATGACAACGTTGACATTT
# TF - GluR: Caul_1442
>Caul_0229(sucC) Score=6 Pos=-245 [Caulobacter sp. K31]
CCATGACAAGGCTGTCATTC
>Caul_1438(zwf) Score=6.5 Pos=-30 [Caulobacter sp. K31]
TCATGACAACGTTGTCATAG
>Caul_1443(pykA) Score=5.7 Pos=-119 [Caulobacter sp. K31]
GCTAGACAACGTTGTCAGGC
>Caul_1442(gluR) Score=5.9 Pos=-68 [Caulobacter sp. K31]
CCTTGACAAGGCTGTCATGC
>Caul_2179(ppdK) Score=6 Pos=-208 [Caulobacter sp. K31]
CCGAGACAACGTTGTCATTG
# TF - CC1627: Caul_4613
>Caul_4613 Score=4.3 Pos=-119 [Caulobacter sp. K31]
TGATGTAATCGAAATCATCG
>Caul_4607(PF06439) Score=4.7 Pos=-78 [Caulobacter sp. K31]
CCATGAAATGGGTTACATTG
>Caul_4612 Score=4.3 Pos=-83 [Caulobacter sp. K31]
CGATGATTTCGATTACATCA
>Caul_4606 Score=4.7 Pos=-118 [Caulobacter sp. K31]
CAATGTAACCCATTTCATGG
>Caul_0426 Score=4.8 Pos=-51 [Caulobacter sp. K31]
ATATGTAATCGAATACACAA
# TF - BglR3: Caul_3555
>Caul_3554(bglT) Score=5.6 Pos=-249 [Caulobacter sp. K31]
GCGCCGCCACGTCATAGATC
>Caul_3555(bglR3) Score=5.6 Pos=14 [Caulobacter sp. K31]
GATCTATGACGTGGCGGCGC
# TF - PdxQ2: Caul_0975
>Caul_0975(pdxQ2) Score=9.1 Pos=-35 [Caulobacter sp. K31]
TATATTGTCAC-GTGACAATATC
>Caul_0976(PF01810) Score=9.1 Pos=-86 [Caulobacter sp. K31]
GATATTGTCAC-GTGACAATATA
>Caul_4473(phzF) Score=7.8 Pos=-82 [Caulobacter sp. K31]
TGTATTGTCAT-GTGACAATGTT
# TF - YrdX3: Caul_2483
>Caul_2484(COG5349) Score=15.2 Pos=-45 [Caulobacter sp. K31]
ATACATACATT-(8)-AATGTATGCAA-(10)-ATTGTATGGAA
# TF - FixJ: Caul_0630, Caul_2344, Caul_2968
>Caul_0629(fixK) Score=4.6 Pos=-76 [Caulobacter sp. K31]
TTAGGCGTCGGTCCCGAC
# TF - FixK: Caul_0629, Caul_2457, Caul_2975
>Caul_3872(hemN) Score=5.2 Pos=-64 [Caulobacter sp. K31]
GACTTGACGCGCGTCAAGGT
>Caul_2437(ccoN) Score=4.5 Pos=-69 [Caulobacter sp. K31]
GCTTTGACCCAAGTCAATTT
>Caul_4506(ctaC) Score=4.3 Pos=-75 [Caulobacter sp. K31]
ACGTTGATGTACGTCAAATC
>Caul_4506(ctaC) Score=4.9 Pos=-42 [Caulobacter sp. K31]
GCCGTGAGGGATATGAAGGC
>Caul_0633(cydD) Score=4.1 Pos=-77 [Caulobacter sp. K31]
CCCTATAGACGCGTCAAGGC
>Caul_0633(cydD) Score=5.5 Pos=-51 [Caulobacter sp. K31]
GCTTTGATTGGTGTCAAGGA
>Caul_0634(cydA) Score=5.5 Pos=-92 [Caulobacter sp. K31]
TCCTTGACACCAATCAAAGC