# TF - NadQ: mll9106, mll5836
>mll5835(nadA1) Score=5.3 Pos=-32 [Mesorhizobium loti MAFF303099]
TTATAATCAGATGGACTATAA
>mll9104(nadA2) Score=5.3 Pos=-58 [Mesorhizobium loti MAFF303099]
TTATAGTCACAAAGATTATAA
>mll9104(nadA2) Score=5.1 Pos=-32 [Mesorhizobium loti MAFF303099]
TTATAATCGTATAGACTATAA
>mll5835(nadA1) Score=5.2 Pos=-58 [Mesorhizobium loti MAFF303099]
TTATAGTCACAACGATTATAT
# TF - NrdR: mlr8403
>mll0136(nrdJ) Score=4.6 Pos=-360 [Mesorhizobium loti MAFF303099]
ACACAAGATGTTGGGG
>mll0136(nrdJ) Score=5.5 Pos=-113 [Mesorhizobium loti MAFF303099]
ATACTATATTTAGTGT
# TF - SahR: mll1589
>mll1589(sahR) Score=6.7 Pos=-58 [Mesorhizobium loti MAFF303099]
ACATAAACATATGTTTATAT
>mlr1243(metH2) Score=6.3 Pos=-37 [Mesorhizobium loti MAFF303099]
ATATAAAGAACTCTTTATAT
>mlr1220(bhmT) Score=6.1 Pos=-54 [Mesorhizobium loti MAFF303099]
ACATAAAGACTTCTTTATAT
>mll5088(ahcY) Score=6 Pos=-143 [Mesorhizobium loti MAFF303099]
GGATAAAGATTTCTTTATAT
# TF - Zur: mll3299
>mll8315(znuC) Score=5.8 Pos=-69 [Mesorhizobium loti MAFF303099]
CTAATGTAATAACATCACATATC
# TF - HutC: mlr7110, mll8317
>mlr8319(hutI) Score=5.8 Pos=-44 [Mesorhizobium loti MAFF303099]
AATATGTATATACATAAT
>mll8318(hutF) Score=5.8 Pos=-71 [Mesorhizobium loti MAFF303099]
ATTATGTATATACATATT
>mlr7111(SMa0403) Score=4.7 Pos=-71 [Mesorhizobium loti MAFF303099]
CAGATGTATGTACATGTA
>mlr7106(COG1028 (FabG)) Score=4.2 Pos=-72 [Mesorhizobium loti MAFF303099]
TGCTTGTATATGTAACTT
>mlr7106(COG1028 (FabG)) Score=3.8 Pos=-76 [Mesorhizobium loti MAFF303099]
TATATGCTTGTATATGTA
>mlr7106(COG1028 (FabG)) Score=4.1 Pos=-82 [Mesorhizobium loti MAFF303099]
CGTTTGTATATGCTTGTA
>mll7105(hisC) Score=4.2 Pos=-173 [Mesorhizobium loti MAFF303099]
AAGTTACATATACAAGCA
>mll7105(hisC) Score=3.8 Pos=-169 [Mesorhizobium loti MAFF303099]
TACATATACAAGCATATA
>mll7105(hisC) Score=4.1 Pos=-163 [Mesorhizobium loti MAFF303099]
TACAAGCATATACAAACG
# TF - RirA: mlr1147
>mlr7638(cycF) Score=3.9 Pos=-28 [Mesorhizobium loti MAFF303099]
AATGAGAAAGCTTGTCATC
>mll4168(exbB) Score=5.1 Pos=-84 [Mesorhizobium loti MAFF303099]
GTTGACTGTTGCAGTCATC
>mll4168(exbB) Score=5 Pos=-59 [Mesorhizobium loti MAFF303099]
GTTGACTTGTATACTCATG
>mlr1155(hmuR) Score=5.2 Pos=-83 [Mesorhizobium loti MAFF303099]
CTTGACTTGAATAATCATG
>msl1154(hmuP) Score=3.8 Pos=-121 [Mesorhizobium loti MAFF303099]
GTTGACTCGTTTACTCCGG
>msl1154(hmuP) Score=5.2 Pos=-83 [Mesorhizobium loti MAFF303099]
CATGATTATTCAAGTCAAG
>mlr1147(rirA) Score=4.6 Pos=-172 [Mesorhizobium loti MAFF303099]
GTTGACGAGAATATTCATC
>mlr3495(fbpA) Score=4.9 Pos=-67 [Mesorhizobium loti MAFF303099]
GTTGACTATTCGTGTCATG
# TF - Irr: mlr5570
>mlr6940(katG) Score=5.1 Pos=-22 [Mesorhizobium loti MAFF303099]
AGTCTGGAATCGTTCCAGATT
>mll4333(ccmA) Score=5 Pos=-86 [Mesorhizobium loti MAFF303099]
TTTCTGGAATAGTTCTAGACA
>mlr0015(sufS2) Score=6.6 Pos=-150 [Mesorhizobium loti MAFF303099]
AGTTTAGAACTATTCAAAACT
>mlr4647(PF00033) Score=5.3 Pos=-32 [Mesorhizobium loti MAFF303099]
AGCTTAGAAATCTTCAAAACT
>mlr5523(iprA) Score=6.9 Pos=-244 [Mesorhizobium loti MAFF303099]
AGTTTAGAATAATTCTAAACT
>mlr4601(mbfA) Score=6.9 Pos=-35 [Mesorhizobium loti MAFF303099]
AGTTTAGAACAATTCTAAACT
>mlr1147(rirA) Score=5.1 Pos=-139 [Mesorhizobium loti MAFF303099]
AGTCTGGAATTGTTCCAAGGT
>mll5315(fssA) Score=6.2 Pos=-50 [Mesorhizobium loti MAFF303099]
TATTTAGAACTATTCCAAACT
# TF - NagQ: mll4768
>mll4769(nagK) Score=-1.8 Pos=-186 [Mesorhizobium loti MAFF303099]
AATACCAGAACAATACCA
>mll4769(nagK) Score=-1.5 Pos=-175 [Mesorhizobium loti MAFF303099]
AATACCAAAAAAATACCA
>mlr4770(murQ) Score=5.9 Pos=-30 [Mesorhizobium loti MAFF303099]
TGGTATTGTTCTGGTATT
>mlr4770(murQ) Score=6.5 Pos=-41 [Mesorhizobium loti MAFF303099]
TGGTATTTTTTTGGTATT
# TF - GlcC: mll6911
>mll6911(glcC) Score=4.6 Pos=-78 [Mesorhizobium loti MAFF303099]
AATTGGATAAATAATTTGACCAGTT
>mlr6914(mlr6914) Score=5.2 Pos=-156 [Mesorhizobium loti MAFF303099]
AACTGGTCAAATTATTTATCCAATT
>mlr6916(glcD) Score=4.4 Pos=-113 [Mesorhizobium loti MAFF303099]
CACTGGTAAAAGATTTTGACCAGTG
# TF - NtrC: mlr0398
>mll4247(glnK) Score=5.2 Pos=-202 [Mesorhizobium loti MAFF303099]
TGCATAATTTTTGAGCA
>mll0345(glnB) Score=4.5 Pos=-222 [Mesorhizobium loti MAFF303099]
TGCCTAATTCTTATGCG
# TF - ModE: mll1462
>mll1465(modA) Score=5.9 Pos=-71 [Mesorhizobium loti MAFF303099]
GTTATATTCATGCGGATATATC
# TF - LexA: mlr0626
>mlr4426(imuA) Score=1.2 Pos=-39 [Mesorhizobium loti MAFF303099]
GAACATAACAGGAAC
>mlr0750(uvrA) Score=4.9 Pos=-167 [Mesorhizobium loti MAFF303099]
GTTCGGCCTTTGTTC
>mll7417(PF04055) Score=5.6 Pos=-175 [Mesorhizobium loti MAFF303099]
GTTCTTGCTTTGTTC
>mll3901(ruvC) Score=4.8 Pos=-58 [Mesorhizobium loti MAFF303099]
GTTTCCGGTTTGTTC
>mlr0626(lexA) Score=4.9 Pos=-60 [Mesorhizobium loti MAFF303099]
GTTCTGGGTTTGTTT
>mlr0030(recA) Score=1.3 Pos=-73 [Mesorhizobium loti MAFF303099]
GAACAAAAAAGGTAC
>mlr0030(recA) Score=1.5 Pos=-139 [Mesorhizobium loti MAFF303099]
GTACGAAAAAAGAAC
>mlr7946(uvrD2) Score=-0.5 Pos=-30 [Mesorhizobium loti MAFF303099]
GAACAAAGCGGAAAC
>mll0743(ssb) Score=0.4 Pos=-116 [Mesorhizobium loti MAFF303099]
GAACGAAAAGGGAAC
>mlr0901(parE) Score=1.1 Pos=-86 [Mesorhizobium loti MAFF303099]
GAACGTAACAGGAAC
>mlr1503(uvrD) Score=0 Pos=-142 [Mesorhizobium loti MAFF303099]
GAACAAAACGTAGAC
>mlr4857(rmuC) Score=5 Pos=-16 [Mesorhizobium loti MAFF303099]
GTTCACGTTTTGATC
>mll1421(PF01443) Score=4.6 Pos=-122 [Mesorhizobium loti MAFF303099]
GTTCCCTTTACGTTC
>mll2568(greA) Score=4.7 Pos=-71 [Mesorhizobium loti MAFF303099]
GTTTTCTTTTTGTAC
>mlr0866(dinP) Score=5.2 Pos=-21 [Mesorhizobium loti MAFF303099]
GTTCTCTTTATGTTC
# TF - LiuR: mlr5623, mll1317
>mlr7452(acdH2) Score=6.5 Pos=-109 [Mesorhizobium loti MAFF303099]
TTTGACGTTTACGTAAAA
>mlr5624(acdH) Score=6.1 Pos=-115 [Mesorhizobium loti MAFF303099]
ATTGACGTTTACGCAAAC
>mll4308(mdh) Score=5.8 Pos=-203 [Mesorhizobium loti MAFF303099]
TTTGACGTTTACGTAAGT
>mll1317(liuR1) Score=5.3 Pos=-127 [Mesorhizobium loti MAFF303099]
ATTGACTTTTACGTAAAT
>mll7718(PF09917) Score=5.3 Pos=-69 [Mesorhizobium loti MAFF303099]
GCTTACGTTTGCGTAAGC
>mlr5623(liuR2) Score=5.6 Pos=-154 [Mesorhizobium loti MAFF303099]
ATTGACGTAAACGTAAAA
# TF - NifA: mll5857, mll5837
>mll6127(ompW) Score=4.6 Pos=-194 [Mesorhizobium loti MAFF303099]
TGTCGGATCTTCGACG
>mll6127(ompW) Score=4.3 Pos=-177 [Mesorhizobium loti MAFF303099]
AGTCGGACATGAGACA
>mlr6364(cpxP) Score=3.6 Pos=-331 [Mesorhizobium loti MAFF303099]
TGTCAAATCCGCATCA
>mll5855(nifB) Score=5.1 Pos=-156 [Mesorhizobium loti MAFF303099]
TGTCGGCGACCTGACA
>msr5868(PF05082) Score=4.2 Pos=-459 [Mesorhizobium loti MAFF303099]
TGTCCAATTCACGACA
>msr5868(PF05082) Score=4.2 Pos=-217 [Mesorhizobium loti MAFF303099]
CGTCGCCAAATCGACA
>mlr5905(nifH) Score=4.3 Pos=-207 [Mesorhizobium loti MAFF303099]
TGTCAGGGCCGCTACA
>msr5928(PF05082) Score=3.6 Pos=-77 [Mesorhizobium loti MAFF303099]
GGTCGGCGATGTGACT
>mll5942(iscN) Score=4.6 Pos=-115 [Mesorhizobium loti MAFF303099]
TGTTGGATGTGAGACA
>mll5862(fixB) Score=5.2 Pos=-161 [Mesorhizobium loti MAFF303099]
TGTCGAAAAGCCGACA
>mll5942(iscN) Score=4.8 Pos=-133 [Mesorhizobium loti MAFF303099]
TGTCCGACATCCGACA
>mll5873(ahpC1) Score=4.1 Pos=-482 [Mesorhizobium loti MAFF303099]
GGTCCGACTTCCGACA
>mll5873(ahpC1) Score=3.9 Pos=-462 [Mesorhizobium loti MAFF303099]
TGTCCAGCTTCGGACA
>mlr5875(mlr5875) Score=4 Pos=-154 [Mesorhizobium loti MAFF303099]
TGTCATGTCCGGGACA
# TF - XylR: mlr3714
>mll3713(xylF) Score=5.6 Pos=-87 [Mesorhizobium loti MAFF303099]
GTTTTTTCGAGGCTCGAAAAAAT
>mll3713(xylF) Score=6 Pos=-171 [Mesorhizobium loti MAFF303099]
TTTATTCCGAGGCTCGAAAAAAA
>mlr3714(xylR) Score=6 Pos=-125 [Mesorhizobium loti MAFF303099]
TTTTTTTCGAGCCTCGGAATAAA
>mlr3714(xylR) Score=5.6 Pos=-209 [Mesorhizobium loti MAFF303099]
ATTTTTTCGAGCCTCGAAAAAAC
>mlr5033(xylB) Score=5.9 Pos=-44 [Mesorhizobium loti MAFF303099]
ATTTTTTCGAGACCCGAAAAAAA
# TF - RutR: mlr1634
>mll1632(praX) Score=5.3 Pos=-96 [Mesorhizobium loti MAFF303099]
GTTTGTCCAATCGGTCAAAA
>mlr3148(pntD) Score=4.7 Pos=-165 [Mesorhizobium loti MAFF303099]
GCTTTTCCAAAAGGTCAAAA
>mlr3154(pntA) Score=5.6 Pos=-41 [Mesorhizobium loti MAFF303099]
TTTTGACCAAGCGATAAAAA
>mll4178(pytM) Score=5.5 Pos=-99 [Mesorhizobium loti MAFF303099]
ATTTGACCATGTGGACAAAA
>mll1646(pydX) Score=5.8 Pos=-68 [Mesorhizobium loti MAFF303099]
AATTGACCAATTGATAAAAA
>mlr1634(rutR) Score=5.5 Pos=-151 [Mesorhizobium loti MAFF303099]
TTTTGACCGATTGGACAAAC
# TF - PhnF: mll3341
>mlr3342(phnG) Score=6.6 Pos=-44 [Mesorhizobium loti MAFF303099]
TTGTCTATATCAATAGACAA
>mll3341(phnF) Score=6.7 Pos=-96 [Mesorhizobium loti MAFF303099]
TTGTCTATTGATATAGACAA
# RNA - Cobalamin
>mll6123 Score=130.9 Pos=-317 [Mesorhizobium loti MAFF303099]
GTGATTGTGCGCATGTCGTGGTTCTCCGCGCGGCACTGCCGTAGCGGAGCTAAGAGGGAAGCCGGTGCGATGCCGGCGCTGCCCCCGCAACTGTTAGCGGCGAGCCAAGCCCATTGGTGTCACTGAGGCGAACGGCCTCGGGAAGACGGGCAGAGGCTTTGACCCGCGAGCCAGGAGACCTGCCACGACGAACAACGTCCAC
>mlr8225(cfrX) Score=131.3 Pos=-212 [Mesorhizobium loti MAFF303099]
TACGGTGGGTGCGTGATGGTCCCCGCGCCGAAAGGCAAGGGGTGAAAAGGGAACACGGTGAGACCTCAAAAGGTCGAGACCGTGGCTGCCCCCGCAACTGTAAGCGGAGAGCAAGATCCGACATGCCACTGGCCGGCAAGGCTGGGAAGGCAGGATTGCGCTGAGACCCGCGAGCCAGGAGACCTGCCATCACTGAGTTGACCGGACG
>mll5101(ardX) Score=105.8 Pos=-316 [Mesorhizobium loti MAFF303099]
ATTAGATCATGTCATCTCAGGTGCCGCTTCGTGACGACGGGGCGGAGAATTGGGAAGCCGGTCAAAGTCCGGCGCTGCCCCCGCAACGGTGGTGGAGTTCAAGTCGCAACGGGAGACCACTGGGCAAAAGCCTGGGAAGGTGTCGCGACCGTCCGCAAGGACACTCCAGAGCCCGGAAACCAGCCCGAGATTTTTGAACTCGA
>msl1310(cbtB) Score=120.7 Pos=-217 [Mesorhizobium loti MAFF303099]
CTATAGTCATGCAGTCGTCGGTTCCGTTTTGGAGCCAAGAGGGAATGCGGTGCGGGCGAAATTCTTGCCCAATGCCGTGGCTGCCCCCGCAACTGTGTGCGGTAGTCCTCTCCATATGCCACTGAAGATTCGTCTTCGGGAAGGTGGGGAAGGGCGCTGATCCGTGAGCCAGGAGACCTGCCGACGACGGCAAAACTGAC
>mll7468(bluB) Score=92.1 Pos=-241 [Mesorhizobium loti MAFF303099]
AAGGTCGCCGCCACTGCCTGGTGCCCGCCGCAAGCGGGAGAATCGGGAACACGGTTGAACTCCGTGGCGTGCCCAACGCTGTAAGGGGGACCGCGCCGGTAAATGCCACTGTCGATGACGGGAAGGCACCGGACGCGGGTTGATCCCGAGCCAGAAGACCGGCCTGGCAGGCATCGTCATCC
>mlr1374(cfrX) Score=122.4 Pos=-414 [Mesorhizobium loti MAFF303099]
CTAAATCCGCTCCAGACGGTCCCTTGCCCGCAACGGCAGGGGCTAAGAGGGAATGCGGTGCGGGATTTCGATCTCAAATCCGCGGCTGTCCCCGCAACTGTAAGCGAAGAGCCAAGGCCGAAAGCCACTGGGACGTTCCCGGGAAGGCGGCACCCAAGGCGATGACCCGCGAGCCAGGAGACCTGCCGTCTGCGACAAAAGAATCCG
# RNA - mini-ykkC
>mlr4864(ykkc) Score=44.4 Pos=-112 [Mesorhizobium loti MAFF303099]
CGCGGGGACGACCCCGCGCCTCCCCAAGAATTCGGTCGGGACGACCCGCCA
# RNA - FMN
>mll7281(ribH2) Score=121.3 Pos=-227 [Mesorhizobium loti MAFF303099]
TTAAAGTTCTCAGGGCGGGGTGAAAGTCCCCACCGGCGGTAAGGGCCTCAAACCCAAGCCCGCGAGCGCTTTCCAAGACAATTGGAAAGGTCAGCAGATCCGGTGTGATTCCGGAGCCGACGGTTAGAGTCCGGATGAAAGAGGACGAAA
# RNA - TPP
>mll3867(thiB) Score=70.2 Pos=-160 [Mesorhizobium loti MAFF303099]
AAACGCTCTAACGGGGTGCCGGACGCGATCTTCGCGGACCGGCTGAGAGGCAGTCTCGCCAACCCGCTGAACCTGATCCGGTTTGTACCGGCGGAGGGATTAGACGTTTCGGACAG
>mll5795(thiC) Score=70.8 Pos=-197 [Mesorhizobium loti MAFF303099]
ATGCATTCACCAGGGGAGTCCCGGCAAGGGGCTGAGATACTGCTGGCTTTCGCGGCGCAGTGACCCGTTGAACCTGATCCAGTTCATACTGGCGTAGGGACGGTGCAAGCGCTTTGCG
>mll1759(ykoF) Score=53.8 Pos=165 [Mesorhizobium loti MAFF303099]
CGCCCATCCACAGGGGTGCTCCGTACGGTCGGGGCTGAGACGGGGGCGGCAAGCCCACAGACCCTAGAAGCTGATCTGGGTAATACCAGCGGAGCGAGGCGGGCGATGTTTTCAG
# RNA - serC
>mll3876(serC) Score=65 Pos=-54 [Mesorhizobium loti MAFF303099]
TCCGTGGGCCACCCCTCCCCAACGAGGGGCCACTATCTGGAAGGATAGACCAC
# RNA - speF
>mll2974(speF) Score=286.7 Pos=-437 [Mesorhizobium loti MAFF303099]
GCTTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCCGATCCTCGAATGGTGAGGGAAATCGGTAAGGTAACTGGAGCTAACCCCTCCAGTCGGTCTAGCGGCCAACCGCCAGCCCGAGGACACCTTGAAGCAACGACGGTGCGGGCCTTTCTGGTTCTCTGCCGGTTGTCCAAAGACCGGGGTTACTGAAGAGGCACACCTTCATTGCCGGTAGTGCGGAACGGGGTTCTCCCAATCCAAGCCAAGGCAGACAAAGCGGACCGAAGCCGGGCAGGGCCGAGGTTCATCGCCGCGAGACGGCGTTTCATGGTT
# RNA - Glycine
>mlr0883(gcvT) Score=61.3 Pos=-235 [Mesorhizobium loti MAFF303099]
ACCTGTTTGCGGGAGAGAGCAGCGAGAGCTGCCGCCGAAGGGGAAATCGCCCGAAATCTCTCAGGCAAAAGAACCGTAGACGGG
>mlr0883(gcvT) Score=48.9 Pos=-151 [Mesorhizobium loti MAFF303099]
AAAGACACTCTGGAAAGTCGGGGCTTGCCCCCGCGCCGAAGGTGTAAGCGCCGCTGACAGAGTTCCGGTTGCGCGAGTCTCTCAGGCTTCAGACAGAGGGGCACGGAC
>mlr9201(dadA) Score=45.8 Pos=-217 [Mesorhizobium loti MAFF303099]
GGGAGAGATCGGCTACTGCCGACGCCGACGGAGCAACCCCCCAAGGAAACTCTCAGGCAAAAGTGACCGCA
>mlr9201(dadA) Score=49.7 Pos=-143 [Mesorhizobium loti MAFF303099]
CCGAACGATCTGGAGAGAGACGCCTCGAGCGTCCACCGAAGGGGAAAGCCGGCAGGCCCGGTTAAGCTCTCAGGTAGCCGAGACAGATTTGGGGATTT
# RNA - SAM_alpha
>mlr3538(metX) Score=77.3 Pos=-182 [Mesorhizobium loti MAFF303099]
AACAGTTCCGTGGTGATTTGGCCGGTCGGCTTGCAGCCACGTTAAACAATTCGCTAAAGGGCCGTTTGCGTGACGTAAC
>mll5651(metY) Score=73.9 Pos=-134 [Mesorhizobium loti MAFF303099]
GTCGTTATCCCGTGGTGATTTGGCCGGTCGGCTTGCAGCCACGTTAAACAAGTCGCTAAAGGACCGTTGGCCGCGAGGC
# RNA - Trp_leader
>mlr2774(trpEG) Score=19.3 Pos=-135 [Mesorhizobium loti MAFF303099]
CCATTTGGTGGTGGGCCTGCTGACAGCGGCCTGTTCGAACGCGCGTGCGTGAAAAGAGAGGGTGGCCGCAACGGAAAGTCCGGGCGGCCATTTGTTTTT
# RNA - ybhL
>mll4343(ybhL) Score=55.7 Pos=-84 [Mesorhizobium loti MAFF303099]
ACAGGCATGCTGGAGCCCCGCCAGCGGCGCCTGGGTCCGTAAGAGGCCCGACACCGGACGGGGCAGAA
# TF - RhaR: mll5707
>mll5707(rhaR) Score=6.4 Pos=-113 [Mesorhizobium loti MAFF303099]
TCAATCA---ACGATCA
>mll5707(rhaR) Score=5.2 Pos=-107 [Mesorhizobium loti MAFF303099]
ATAAACG---AAGATCG
>mll5707(rhaR) Score=6.7 Pos=-103 [Mesorhizobium loti MAFF303099]
ACGATCA---TCGATCA
>mll5707(rhaR) Score=6.7 Pos=-62 [Mesorhizobium loti MAFF303099]
ATGATCG---ATGATTG
>mlr5708(rhaEW) Score=5.4 Pos=-150 [Mesorhizobium loti MAFF303099]
ACGAGCA---TCAATCA
>mlr5708(rhaEW) Score=5.8 Pos=-140 [Mesorhizobium loti MAFF303099]
TCAATCA---CCGATCA
>mlr5708(rhaEW) Score=6.9 Pos=-99 [Mesorhizobium loti MAFF303099]
ATGATCG---TTGATCG
>mlr5708(rhaEW) Score=6.7 Pos=-89 [Mesorhizobium loti MAFF303099]
TTGATCG---ATGATTG
# TF - AglR: mlr5115
>mll5113(aglE) Score=6.2 Pos=-138 [Mesorhizobium loti MAFF303099]
AAGCCAAAGCGCTTTGGAAG
>mlr5115(aglR) Score=6.2 Pos=-240 [Mesorhizobium loti MAFF303099]
CTTCCAAAGCGCTTTGGCTT
>mlr5115(aglR) Score=5.4 Pos=-21 [Mesorhizobium loti MAFF303099]
ATTTAAAAGCGCTTTGAGGG
# TF - PckR: mlr5161
>mlr5096(pckA) Score=4.9 Pos=-152 [Mesorhizobium loti MAFF303099]
ATATATAAACGATTTAAACA
>mlr3754(fba) Score=4.7 Pos=-86 [Mesorhizobium loti MAFF303099]
ACTTTCAATCGATTCGAGCT
>mlr5096(pckA) Score=5.1 Pos=-122 [Mesorhizobium loti MAFF303099]
TTTTTAAATCGATTAATGAT
>mlr2994(eda) Score=4.4 Pos=-30 [Mesorhizobium loti MAFF303099]
TCTGCTAATCGGTTGAAATG
>mll6516(zwf) Score=5.6 Pos=-62 [Mesorhizobium loti MAFF303099]
AATTTAAATCGATTAGAATA
>mll4308(mdh) Score=4.9 Pos=-179 [Mesorhizobium loti MAFF303099]
CCATCTAACCGATTGAAAAT
>mlr7586(glgP) Score=5.4 Pos=-48 [Mesorhizobium loti MAFF303099]
CATCTAAATCGATTGAATAT
>mlr3822(COG3931) Score=5 Pos=-160 [Mesorhizobium loti MAFF303099]
AATTCCAATCGATTTAGGAA
>mll3821(COG5480) Score=5 Pos=-40 [Mesorhizobium loti MAFF303099]
TTCCTAAATCGATTGGAATT
>mll3969(pyc) Score=5.3 Pos=-104 [Mesorhizobium loti MAFF303099]
GATTTAAATCGGTTTAAACC
>mll0929(glpX) Score=5 Pos=-128 [Mesorhizobium loti MAFF303099]
TGGTTCAATCGATTGATATT
# TF - HrcA: mll4621
>mll8202(groS) Score=7.2 Pos=-91 [Mesorhizobium loti MAFF303099]
TTAGCACTCGCCCTTGGTGAGTGCTAA
>msl5812(groS) Score=7.2 Pos=-79 [Mesorhizobium loti MAFF303099]
TTAGCACTCCCCAATAGCGAGTGCTAA
>msr9341(groS) Score=7.1 Pos=-81 [Mesorhizobium loti MAFF303099]
TTAGCACTCGCCTCTGCCGAGTGCTAA
>mlr2393(groS) Score=6.7 Pos=-183 [Mesorhizobium loti MAFF303099]
CTAGCACTCTCGCACGCCGAGTGCCAA
>mll2233(groS) Score=6.5 Pos=-80 [Mesorhizobium loti MAFF303099]
TTGGCACTCCTATCTATCGAGTGCCAA
# TF - MntR: mll2499
>mlr2501(mntH) Score=5.2 Pos=-195 [Mesorhizobium loti MAFF303099]
TTTATAGCACGGGCTCTGAT
>mll2499(mntR) Score=5.2 Pos=-55 [Mesorhizobium loti MAFF303099]
ATCAGAGCCCGTGCTATAAA
# TF - MocR: mll4997
>mlr4998(mocD) Score=5.4 Pos=-117 [Mesorhizobium loti MAFF303099]
AATGATAGAAACTATCTTT
>mll4997(mocR) Score=5.4 Pos=-67 [Mesorhizobium loti MAFF303099]
AAAGATAGTTTCTATCATT
# TF - SmoR: mlr7217
>mll7216(fruK) Score=5 Pos=-123 [Mesorhizobium loti MAFF303099]
AGAGTTGCGCGCGTCAAATT
>mlr7217(smoR) Score=5 Pos=-157 [Mesorhizobium loti MAFF303099]
AATTTGACGCGCGCAACTCT
# TF - SoxR: mlr2720
>mlr3125(PF07690) Score=5.6 Pos=-161 [Mesorhizobium loti MAFF303099]
AGCTCAACCGCGGTTGAGGT
>mlr7819(PF03992) Score=6.3 Pos=-75 [Mesorhizobium loti MAFF303099]
ACCTCAACTTAAGTTGAGAT
>mlr2720(soxR) Score=6 Pos=-37 [Mesorhizobium loti MAFF303099]
AGCTCAACATAACTTGAGGT
# TF - CueR: mll5312
>mlr5325(copA) Score=5.2 Pos=-62 [Mesorhizobium loti MAFF303099]
ACCTTCCAGTTACTGGAAGCA
# TF - CadR-PbrR: mlr2476
>mll2475(cadA) Score=6.1 Pos=-97 [Mesorhizobium loti MAFF303099]
AAGCTCTAGTGACTAGAGCAA
# TF - SMb21598: mlr1512
>mll1511(COG0673) Score=6.5 Pos=-88 [Mesorhizobium loti MAFF303099]
TCTCGTAAACGTTTACGGAA
>mlr1512(SMb21598) Score=6.8 Pos=-121 [Mesorhizobium loti MAFF303099]
TTCCGTAAACGTTTACGAGA
>mlr1512(SMb21598) Score=5.4 Pos=-134 [Mesorhizobium loti MAFF303099]
CGCCGTAAACGTTTTCCGTA
# TF - SMb21706: mlr2242
>mlr2242(SMb21706) Score=6.2 Pos=-149 [Mesorhizobium loti MAFF303099]
TTGAGAAAAGGTTTTTCCAA
>mlr2242(SMb21706) Score=6.2 Pos=-81 [Mesorhizobium loti MAFF303099]
AAGAGAAAACCTTTTCCCAA
# TF - SMc04260: mlr3320
>mlr3320(SMc04260) Score=5.7 Pos=-116 [Mesorhizobium loti MAFF303099]
AATCTGTAACGTTTCAGTAT
>mll3319(SMc04259) Score=5.6 Pos=-35 [Mesorhizobium loti MAFF303099]
AATCTGTAACGTTTCAGATT
# TF - EutR: mlr7131
>mlr7132(ehuA) Score=3.1 Pos=-34 [Mesorhizobium loti MAFF303099]
ATTGTCATGATATTAT
>mlr7132(ehuA) Score=3.5 Pos=-11 [Mesorhizobium loti MAFF303099]
ATTGACATGATTTGGC
>mll7129(doeX) Score=3.2 Pos=-70 [Mesorhizobium loti MAFF303099]
TCGAAATCAGTGCAAT
>mlr7131(EutR) Score=3.2 Pos=-29 [Mesorhizobium loti MAFF303099]
ATTGCACTGATTTCGA
# TF - BioR: mlr7428
>mlr7428(bioR) Score=4.8 Pos=-13 [Mesorhizobium loti MAFF303099]
TTATCTATAA
# TF - IolR: mlr1005
>mlr1005(iolR) Score=6 Pos=-132 [Mesorhizobium loti MAFF303099]
GAATGCTACCGGGTGCAAAA
>mlr1005(iolR) Score=6.5 Pos=-110 [Mesorhizobium loti MAFF303099]
GTTTGCTACCGGGTGCAAAC
>mll1004(iolK) Score=6.5 Pos=-88 [Mesorhizobium loti MAFF303099]
GTTTGCACCCGGTAGCAAAC
>mll1004(iolK) Score=6 Pos=-66 [Mesorhizobium loti MAFF303099]
TTTTGCACCCGGTAGCATTC
# TF - AfrR: mlr3045
>mll3044(PF06187) Score=5.7 Pos=-209 [Mesorhizobium loti MAFF303099]
CTATTGGAACGTTCTAATCC
>mll3044(PF06187) Score=5.6 Pos=-45 [Mesorhizobium loti MAFF303099]
TTATTGGAACGTTCCATTTA
>mlr3045(afrR) Score=5.6 Pos=-216 [Mesorhizobium loti MAFF303099]
TAAATGGAACGTTCCAATAA
>mlr3045(afrR) Score=5.7 Pos=-52 [Mesorhizobium loti MAFF303099]
GGATTAGAACGTTCCAATAG
# TF - Mll1683: mll1683
>mll1682(mll1682) Score=5.9 Pos=-313 [Mesorhizobium loti MAFF303099]
CTATGGTAGCGCTACCATTT
# TF - PdxQ: mlr6174
>mll6378(COG3382) Score=10.6 Pos=-141 [Mesorhizobium loti MAFF303099]
TACTGGACCAA-(13)-AAGTGGCAGTT-(4)-TTGGACCAGTG
>mlr6176(pdxO2) Score=12.9 Pos=-87 [Mesorhizobium loti MAFF303099]
AACTGGACTAC-(13)-GACTGGCTGTT-(4)-ATAGGCCAGCT
# TF - SMb20039: mlr1139
>mll1137(COG697) Score=14.2 Pos=-95 [Mesorhizobium loti MAFF303099]
ATCTGTATTGC-(8)-CCATTACAGTT-(6)-AATTGTACCGC
# TF - Mll0059: mll0059
>msr0060(PF06568) Score=9.2 Pos=-102 [Mesorhizobium loti MAFF303099]
ATTTGTCA---TGACAATT
>mll0059(Mll0059) Score=9.2 Pos=-10 [Mesorhizobium loti MAFF303099]
AATTGTCA---TGACAAAT
# TF - PdxW: mlr1821
>mll1820(pdxO) Score=11.3 Pos=-57 [Mesorhizobium loti MAFF303099]
GATTGGTC-(16)-GATTGGTT-(8)-GACCAATG
# TF - Mll2434: mll2434
>mlr2436(mviM) Score=13.4 Pos=-99 [Mesorhizobium loti MAFF303099]
ATCTGGTTCC-(14)-ATCTGGTTCT-(6)-GGAACCAAAG
# TF - FnrN/FixK/AadR: mll6578, mlr6409, mll6632
>mll6630(ccoN) Score=5.5 Pos=-96 [Mesorhizobium loti MAFF303099]
GCTTTGACCTGGATCAAGGC
>mll6626(ccoG) Score=5.1 Pos=-129 [Mesorhizobium loti MAFF303099]
GGATTGACCTGCATCAACGC
>mlr6415(ccoG) Score=4.8 Pos=-145 [Mesorhizobium loti MAFF303099]
CGATTGACCTGCAGCAAGGC
>mlr7688(ccmI) Score=5.2 Pos=-98 [Mesorhizobium loti MAFF303099]
CGGTTGATGTCGATCAAGGA
>mll6632(fnrN) Score=5.1 Pos=-103 [Mesorhizobium loti MAFF303099]
GCCTTGATTTCGGTCAAAGC
>mlr6409(fnrN) Score=3.8 Pos=-102 [Mesorhizobium loti MAFF303099]
GCCCTGATTTCGGTCAGCCT
# TF - FixJ: mll6607
>mll6578(fixK) Score=4.9 Pos=-89 [Mesorhizobium loti MAFF303099]
CTAGGTAGTTTCCCGTAG
>mll5857(nifA) Score=3.1 Pos=-193 [Mesorhizobium loti MAFF303099]
CTTCGGCGTTCTCTTCAA