# TF - NrdR: BMEI1190
>BMEI0943(nrdJ) Score=4.9 Pos=-537 [Brucella melitensis 16M]
GCACAATATCTAGCGT
>BMEI0943(nrdJ) Score=5.3 Pos=-279 [Brucella melitensis 16M]
ACACAAGATTTAGTAT
>BMEI0943(nrdJ) Score=4.5 Pos=-31 [Brucella melitensis 16M]
CTACTATATATAGAAC
>BMEII0932(nrdH) Score=5 Pos=-555 [Brucella melitensis 16M]
CTACCATATCTTGTGT
# TF - SahR: BMEI0558
>BMEI0558(sahR) Score=7 Pos=-45 [Brucella melitensis 16M]
ATATAAACATATCTTTATAT
>BMEI1759(metH) Score=6.8 Pos=-140 [Brucella melitensis 16M]
ACATAAAGATATGTTTATGT
>BMEI2029(ahcY) Score=6.3 Pos=-112 [Brucella melitensis 16M]
GTATAAAGATTTGTTTATAT
# TF - NikR: BMEII0486
>BMEII0486(nikR) Score=7.1 Pos=-180 [Brucella melitensis 16M]
GTATGAT--------------ATCATAT
>BMEII0487(nikA) Score=7.1 Pos=-57 [Brucella melitensis 16M]
ATATGAT--------------ATCATAC
# TF - Zur: BMEII0175
>BMEII0177(znuC2) Score=5.4 Pos=-183 [Brucella melitensis 16M]
GATATGTTATTTTATTACGCAAA
>BMEII0178(znuA2) Score=5.3 Pos=-106 [Brucella melitensis 16M]
CAGACGTTATAGCATAACGTAAT
# TF - NnrR: BMEII0966, BMEII0986
>BMEII0988(nirK) Score=4.8 Pos=-187 [Brucella melitensis 16M]
CTTTGTCTTAACGCAAAC
>BMEII0988(nirK) Score=4.7 Pos=-28 [Brucella melitensis 16M]
CTTGGTCCTATCGCAAAG
>BMEII0965 Score=4.1 Pos=-120 [Brucella melitensis 16M]
GTTTGATTTTAATCAAAG
>BMEII1001(norE) Score=5 Pos=-51 [Brucella melitensis 16M]
CTTTGCCAAAACGCAAAG
>BMEII0975(nosR) Score=3.9 Pos=-233 [Brucella melitensis 16M]
CTTTGCGTCATATCAATA
>BMEII0999(norC) Score=4.9 Pos=-144 [Brucella melitensis 16M]
CTTTGCCTATTCGCAAAG
# TF - HutC: BMEII0370
>BMEII0369(hutF) Score=5.4 Pos=-101 [Brucella melitensis 16M]
ATAATGTATATACATATT
>BMEII0368(hutI) Score=5.4 Pos=-47 [Brucella melitensis 16M]
AATATGTATATACATTAT
# TF - HypR: BMEII1007
>BMEII1006(hypD) Score=5.2 Pos=-89 [Brucella melitensis 16M]
TCTTGTCGACAAGA
# TF - RirA: BMEII0707
>BMEI0542(BMEI0542) Score=5.1 Pos=-133 [Brucella melitensis 16M]
CATGATTAACATAATCATG
>BMEI0365(exbB) Score=4.5 Pos=-164 [Brucella melitensis 16M]
CATGACTTGAAGTATCATA
>BMEI1042(sufB) Score=4.1 Pos=-161 [Brucella melitensis 16M]
CTTGAATTTTATTGGCAAA
>BMEII0707(rirA) Score=3.6 Pos=-183 [Brucella melitensis 16M]
GGTGAGAAAAGGTTTCATA
>BMEII0584(fbpA) Score=4.2 Pos=-52 [Brucella melitensis 16M]
CCTGATCCATATACTCATG
>BMEII0705(bfd) Score=4.1 Pos=-345 [Brucella melitensis 16M]
CATGgaTATTtaAcTCATa
>BMEII1051(fumC) Score=4.5 Pos=-124 [Brucella melitensis 16M]
CTTGACATTTATATTCACA
>BMEII0105(frpB) Score=4.9 Pos=-261 [Brucella melitensis 16M]
TATGAATGTATTAGTCATC
# TF - Irr: BMEI1563, BMEI1955
>BMEI1042(sufB) Score=4.8 Pos=-119 [Brucella melitensis 16M]
AGTTTAGAGAGGTTTTAAAGA
>BMEI0354(mbfA) Score=6.6 Pos=-203 [Brucella melitensis 16M]
ATTTTAGAATTATTCTAAATT
>BMEII0707(rirA) Score=5.6 Pos=-162 [Brucella melitensis 16M]
TTTTAAGAATGATTCTAAAGT
>BMEII0885(tpd) Score=6 Pos=-137 [Brucella melitensis 16M]
TGTTTAGAATTGATCTAAACT
# TF - NagQ: BMEII0757
>BMEII0756(nagK) Score=-1.1 Pos=-132 [Brucella melitensis 16M]
AATGCCAAAAACGCACCA
>BMEII0755(nagT) Score=4.7 Pos=-219 [Brucella melitensis 16M]
TGGTGCGTTTTTGGCATT
# TF - GlcC: BMEII1066
>BMEII1064(glcD) Score=7.9 Pos=-78 [Brucella melitensis 16M]
AAGTGGTAAAAACGATTTACCACTT
>BMEII0377(lldD) Score=4.6 Pos=-33 [Brucella melitensis 16M]
GATTGGTAAAGAAAACTGACCACAA
>BMEII1065(lysR) Score=6 Pos=-111 [Brucella melitensis 16M]
AAGTGGTAAATCGTTTTTACCACTT
>BMEI1232(lldP) Score=4.5 Pos=-171 [Brucella melitensis 16M]
CTCTGGTAAAGTAAGTTTACCAATC
# TF - NtrC: BMEI0866
>BMEI0167(amtB) Score=5 Pos=-195 [Brucella melitensis 16M]
AGCTTAAATTTTAAGCA
>BMEI0864(nifR3) Score=3.8 Pos=-48 [Brucella melitensis 16M]
TGATTAAACTGTATGCG
>BMEI0864(nifR3) Score=3.9 Pos=-21 [Brucella melitensis 16M]
TGCATATCAAATAGGCG
>BMEI0978(glnB) Score=5.2 Pos=-220 [Brucella melitensis 16M]
TGCATAATTTTTAAGCA
# TF - Mur: BMEI0375
>BMEI0569(mntH) Score=5.3 Pos=-44 [Brucella melitensis 16M]
AATGCAAATAGTTTGCAAC
>BMEI1563(irr1) Score=6 Pos=-200 [Brucella melitensis 16M]
ATTGCAAACCATTTGCAAT
# TF - LexA: BMEI0840
>BMEI1874(imuA) Score=1.4 Pos=-66 [Brucella melitensis 16M]
GAACATAAAGTGAAC
>BMEI0878(uvrA) Score=5 Pos=-156 [Brucella melitensis 16M]
GTTCGATATTTGTTC
>BMEI1541(PF04055) Score=5.7 Pos=-85 [Brucella melitensis 16M]
GTTCTTGATTTGTTC
>BMEI0332(ruvC) Score=5.1 Pos=-60 [Brucella melitensis 16M]
GTTTCTCTTTTGTTC
>BMEII0263(rmuC) Score=5.2 Pos=-251 [Brucella melitensis 16M]
GTTCCTGTTTTGATC
>BMEI0840(lexA) Score=5.2 Pos=-45 [Brucella melitensis 16M]
GTTCTGGTTTTGTTT
>BMEII0676(parE) Score=1 Pos=-143 [Brucella melitensis 16M]
GAACGTAAAGCGAAC
>BMEI0840(lexA) Score=1.7 Pos=-71 [Brucella melitensis 16M]
GAACAAGACTGGAAC
>BMEI0275(mgpS) Score=-0 Pos=-220 [Brucella melitensis 16M]
GAACAAATACAGAAA
>BMEI0787(recA) Score=0.5 Pos=-73 [Brucella melitensis 16M]
GAACAAAACAGATAC
>BMEI0787(recA) Score=1.7 Pos=-138 [Brucella melitensis 16M]
GAACAAGAATGGAAC
>BMEI0880(ssb) Score=0.9 Pos=-202 [Brucella melitensis 16M]
GAACAAAACAGGAAC
>BMEI0508(greA) Score=4.3 Pos=-149 [Brucella melitensis 16M]
GTTTTCTTTTTGTGT
>BMEII0656(dinP) Score=5.1 Pos=-35 [Brucella melitensis 16M]
GTTCCTTTTATGTTC
# TF - LiuR: BMEII0467, BMEI0808
>BMEI1521(acdH2) Score=5.8 Pos=-112 [Brucella melitensis 16M]
ATTGACGTTTACGTAATA
>BMEI0304 Score=5.4 Pos=-84 [Brucella melitensis 16M]
ATTTACCTTTACGTAAAT
>BMEI1315(PF09917) Score=5.5 Pos=-148 [Brucella melitensis 16M]
GTTTACGTTTGCGTAAGC
>BMEI1315(PF09917) Score=5.2 Pos=-154 [Brucella melitensis 16M]
GTTTACGTTTACGTTTGC
>BMEI1320(etfD) Score=6 Pos=-244 [Brucella melitensis 16M]
TTTGACGTTTACGTTAAG
>BMEII0495(acdH) Score=6.1 Pos=-193 [Brucella melitensis 16M]
TTTGACGTTTACGGAAAC
>BMEII0495(acdH) Score=4.6 Pos=-187 [Brucella melitensis 16M]
GTTTACGGAAACGTCAAA
>BMEI0137(mdh) Score=6 Pos=-179 [Brucella melitensis 16M]
TCTTACGTTTACGTAAGA
>BMEI0808(liuR1) Score=5.3 Pos=-65 [Brucella melitensis 16M]
ATTGACTTTTACGTAAAT
>BMEII0460(PF03060) Score=5.5 Pos=10 [Brucella melitensis 16M]
TATTACGTTTACGGAAAC
>BMEI0096(etfB) Score=5.3 Pos=-176 [Brucella melitensis 16M]
ATTGACGTGCACGTCAAC
>BMEI1320(etfD) Score=5.3 Pos=-238 [Brucella melitensis 16M]
GTTTACGTTAAGGTAAAA
>BMEI1371(SMc00041) Score=5 Pos=37 [Brucella melitensis 16M]
TATTACGTAAACGTAAGA
# TF - RutR: BMEI1642, BMEI1641
>BMEI1638(pydX) Score=5.5 Pos=-158 [Brucella melitensis 16M]
AATTGACCGGATGATAAAAA
>BMEI1642(rutR) Score=5.3 Pos=-90 [Brucella melitensis 16M]
ACTTGACTAGTTGGTCAAAA
>BMEI1643(pydC) Score=5.1 Pos=-148 [Brucella melitensis 16M]
TTTTGACCAACTAGTCAAGT
# TF - PhnF: BMEI0881
>BMEI0881(phnF) Score=6.6 Pos=-70 [Brucella melitensis 16M]
TTGTCTATTTATATAGATAA
>BMEI0882(phnN) Score=6.1 Pos=-136 [Brucella melitensis 16M]
TTATCTATATAAATAGACAA
# RNA - Cobalamin
>BMEI0657(btuB1) Score=108.6 Pos=-447 [Brucella melitensis 16M]
CGCAATTTTCAGGAGACGGTTCCGCCATTGCGGCGGATGAAAAGGGAACACGGTGAAGCCATAGGGCTGAAACCGAGACTGCCCCCGCAACTGTAACCGGAGAGCTATCCTCCACAGGCCGCGCAAGCGGCCAAAGCCACTGAAAGCAGCAATATGCTGCAATCGGGAAGGCGGAGGCAAAGCGAAGACCCGGAAGTCAGGAGACCTGCCGTATCCGGTCACCCATGCTT
>BMEI0691(cbtB) Score=80.3 Pos=-299 [Brucella melitensis 16M]
TGTCAAACCATGTGACAGGTTTTGCCGGAACGAATCCCCGGCAATACCAAAAGGGAATGCGACGGACGGACCCACGCCGGGCGTCTTTATCGCAGCCGACCCCGCGACTGTAGAGCGGAGAGGGAAGAGGCAAGCCGGGCAACCGGCAGCCACTGGAAATCAGATGGATTTCTGGGAAGGCGCTTTATTCCCCAAGACCCGCGAGCCAGGAGACCTGCCTGTTGCATGAGGGCATTGCG
>BMEII0932(nrdH) Score=120.9 Pos=-554 [Brucella melitensis 16M]
TACCATATCTTGTGTTCGAGGTTCTTTCGATTCGACGAGTCGGGAGCTAAGACGGGAATCCGGTGCGCTTGCCCATGGTGGGCGGGCAATGCCGGAGCTGCCCCCGCAACTGTAAGCGGCGAGCTTTGCGCCCCATGCCACTGGCGAAAGCCGGGAAGGCGGGTGGAAGCGTTGAGCCGTGAGCCAGGAGACCTGCCTTGAGCGTGAACGTCCAC
>BMEII0535(btuF) Score=126.1 Pos=-431 [Brucella melitensis 16M]
CGTAATACCGTCATGACGGTTCCCCGACCGAGAGCGAAGGGGATTAATAGGGAACACGGTGAGGACGACCCATCAAGGGGCCGAGACCGTGGCTGCCCCCGCAACTGTAAGCGGATTGCCGTTCATCCTCGTGACGCCGAAAGCGTCATGCCACTGTGCCCACGGCACGGGAAGGCAGATGGACGGCGATTATCCGCAAGCCAGGAGACCTGCCGTCTTACGTAGTCCATTGTC
# RNA - FMN
>BMEII0589(ribH2) Score=120 Pos=-241 [Brucella melitensis 16M]
GGCTTGTTCTCGGGGCGGGGTGAAACTCCCCACCGGCGGTATGAAAAGCAATTTTCAAGCCCGCGAGCGCCTGAAATGGAAGCCGATTCGCATGCCATTTCAGGGTCAGCAGATCCGGTGAGATGCCGGAGCCGACGGTTAAAGTCCGGATGGAAGAGAGCGAAT
# RNA - TPP
>BMEI0285(thiB) Score=59.4 Pos=-210 [Brucella melitensis 16M]
AGTCGCTCTAACGGGGTGCCATCTGCTTTTGGGGATGGCTGAGAGGCCAAACAAGGCATTTCCAGCAAAAGCGTGAAACGGTTTTGCATCAGGAAATACTTGAAAACTGCCCGGCCAACCCGCTGAACCTGATCCGGTTTGCACCGGCGGAGGGATTAGACGCTCGATGAAC
>BMEI1732(thiD) Score=77.7 Pos=-153 [Brucella melitensis 16M]
AAAATTCGTTGGGGTGCCTTGAAAGAGGCTGAGAGACGCATTCTCACGTCAACCCATTGAACCTGATCCGGGTAATACCTGCGTAGGGAACGGAGTTTGGCGCGTCGC
# RNA - serC
>BMEI0347(serC) Score=60.4 Pos=-54 [Brucella melitensis 16M]
AGTGGGCCACGTCTCCCCAACGAGACGCGTGCTATCTGAGAGGATAGAAACAAC
# RNA - speF
>BMEII1133(speF) Score=327.7 Pos=-404 [Brucella melitensis 16M]
GCTTGCCCAAAGTCGCACGTGCCTGTGGGTGTCCGCCGATCCTCGAATGGTGAGGAATTCGGTACGGTACCTGGACCTAACCGCTCCAGTCGATCTGATGGCCAACCGCCAGATCGAGGACATCTTGAAGCAACGACGGTGCGGGCCTTTCTAGTGTCTTTCGGCTGTCCAAAAGTCGAAATTACTGAAGAGGCACACCTTCATTGCCAGAAGTGCGGATGCGGTTCTCCAATTCCAAGCCAAGGCAGACAAAGCGGAGTAACGCTTAGTTTAGCGTTGTTCCATCGCCGCATAAAGTTTTCGCGTGACA
# RNA - Glycine
>BMEII0559(gcvT) Score=48.6 Pos=-231 [Brucella melitensis 16M]
GTCTGTTTGCGGGAGAGAGCCGTTAAGGCCGCCGAAGGGGAAAACGCCCGAAATCTCTCAGGTACAAGGAACCGCAGGCGGG
>BMEII0559(gcvT) Score=49.7 Pos=-148 [Brucella melitensis 16M]
AAGACAACTCTGGAAAGTCGGGGGCAACTCCGCGCCGAAGGTGTAAGTATGGCTTTATATATAGCCATGCGAGTCTCTCAGGCCTGAGACAGAGGGGCACGAAC
# RNA - SAM_alpha
>BMEI1617(metY) Score=80.5 Pos=-160 [Brucella melitensis 16M]
ACCTGTTCCGTGGTGATTTGGCCGGCCGGCTTGCAGCCACGTTAAAGAATTCGCTAAATAAGGCCGCGGTTCGTTACCGGC
# RNA - Trp_leader
>BMEI0449(trpEG) Score=20.7 Pos=-184 [Brucella melitensis 16M]
ACGGTTGGTGGTGGGCTCGCTAAAAGCGGCCACGCAGGCGTTCGTGCATATGCGTTCAGAAGACAGGCCGCTGGGATTATCCGGGCGGCCTTTTTGTTTG
# RNA - ybhL
>BMEI1859(ybhL) Score=44.6 Pos=-95 [Brucella melitensis 16M]
ACAGGCATGCTGGGGTCCCGCCAGCGGCGCCTGGCGGCAGCTTGTGCATATGAGCGCCCCGACACCGGACGGGACAAGG
# TF - ThuR: BMEII0946
>BMEII0946(thuR) Score=5.8 Pos=-126 [Brucella melitensis 16M]
GATTGAAAGCGGTTTGGATT
>BMEII0945(thuE) Score=5.8 Pos=-244 [Brucella melitensis 16M]
AATCCAAACCGCTTTCAATC
>BMEII0945(thuE) Score=5.2 Pos=-75 [Brucella melitensis 16M]
TACCCAAACCGTTTTCGATT
# TF - PckR: BMEII0312
>BMEI0244 Score=5 Pos=-59 [Brucella melitensis 16M]
GAATTAAATGGTTTTAAATT
>BMEI0137(mdh) Score=5 Pos=-155 [Brucella melitensis 16M]
AAATCTAACCGATTGAAAAC
>BMEI2037(pckA) Score=4.6 Pos=-149 [Brucella melitensis 16M]
CGGGTTAAACGATTTAAAAA
>BMEI2037(pckA) Score=5.8 Pos=-120 [Brucella melitensis 16M]
ATTTTAAATCGATTAAATAT
>BMEII0513(zwf) Score=5.5 Pos=-94 [Brucella melitensis 16M]
AATTTAAATCGATTAGATAT
>BMEII0252(mgsA) Score=4.9 Pos=-59 [Brucella melitensis 16M]
GATTTAAAACGATTTAGCCG
>BMEII0009(eda) Score=5.4 Pos=-75 [Brucella melitensis 16M]
GATTTAAATCGATTTATAAG
>BMEI1833(scrK) Score=5.5 Pos=-47 [Brucella melitensis 16M]
ATTTTCAATCGATTTAACAG
>BMEI0726(glpX) Score=4.6 Pos=-158 [Brucella melitensis 16M]
GCTCTAAATCGATTAAGGCT
>BMEI1636(pgi) Score=5.4 Pos=-32 [Brucella melitensis 16M]
AGATTAAATCGATTTGATTC
# TF - HrcA: BMEI1776
>BMEII1047(groS) Score=6.7 Pos=-87 [Brucella melitensis 16M]
TTAGCACTCGGACGAATAGAGTGCTAA
# TF - CueR: BMEI1729
>BMEI1730(copA) Score=5.4 Pos=-77 [Brucella melitensis 16M]
ACCTTCCAACGGTTGGAAGGG
>BMEI1032(copZ) Score=5.9 Pos=-59 [Brucella melitensis 16M]
ACCTTGCCACGATGGGAAGCT
# TF - CadR-PbrR: BMEI0054
>BMEI0053(cadA) Score=6.3 Pos=-63 [Brucella melitensis 16M]
CTCCTCTAGTTACTAGAGGAT
# TF - BioR: BMEI0320
>BMEII0775(bioB) Score=4.2 Pos=-92 [Brucella melitensis 16M]
TTATCTATTA
>BMEII0775(bioB) Score=4.3 Pos=-22 [Brucella melitensis 16M]
TTATCTACAA
>BMEI0320(bioR) Score=4.8 Pos=-14 [Brucella melitensis 16M]
TTATCTATAA
>BMEI0319(bioY) Score=4.8 Pos=-22 [Brucella melitensis 16M]
TTATCTATAA
# TF - AfrR: BMEI0019
>BMEI0018(PF06187) Score=5.8 Pos=-223 [Brucella melitensis 16M]
TAATTGGAACGTTCCAAGAC
>BMEI0018(PF06187) Score=5.9 Pos=-56 [Brucella melitensis 16M]
CATTTGGAACGTTCTAAACT
>BMEI0019(afrR) Score=5.9 Pos=-154 [Brucella melitensis 16M]
AGTTTAGAACGTTCCAAATG
# TF - XylR: BMEI1385
>BMEII0146(xylF2) Score=6.3 Pos=-320 [Brucella melitensis 16M]
AATGAGGTACGTAAATCAAA
>BMEI1385(xylR) Score=6.3 Pos=-52 [Brucella melitensis 16M]
TTTGATTTACGTACCTCATT
>BMEI1392 Score=6 Pos=-102 [Brucella melitensis 16M]
TTTGCTTTACGTACCTCAAC
# TF - SMb20039: BMEI0169
>BMEI0170(COG697) Score=12.2 Pos=-81 [Brucella melitensis 16M]
ATCTGTACCAC-(8)-CCAGTACAGTT-(6)-AATTGTCTGGA
# TF - FnrN/FixK/AadR: BMEI1294
>BMEII0988(nirK) Score=3.7 Pos=-188 [Brucella melitensis 16M]
CCTTTGTCTTAACGCAAACA
>BMEII0988(nirK) Score=4.6 Pos=-95 [Brucella melitensis 16M]
ATATTGATTGCGGTCAAGGA
>BMEI1564(ccoN) Score=5.5 Pos=-108 [Brucella melitensis 16M]
TGTTTGATTTAGATCAATGA
>BMEI1294(fnrN) Score=4.2 Pos=19 [Brucella melitensis 16M]
CATTAGATCAGAATCAAAAG
>BMEI0454(ompW) Score=5.5 Pos=-108 [Brucella melitensis 16M]
TCTTTGATTTGGATCAATGG
>BMEI1746(adhA) Score=4.2 Pos=-145 [Brucella melitensis 16M]
GCATTGCGTCTAATCAAGGA
>BMEI0925(adhA) Score=4.6 Pos=-85 [Brucella melitensis 16M]
CTCTTGACGGAAATCAACGC