# TF - NrdR: Jann_3422
>Jann_2472(nrdJ) Score=4.6 Pos=-231 [Jannaschia sp. CCS1]
CTACCACATATAGGGT
# TF - Zur: Jann_0313
>Jann_0312(znuA) Score=5.4 Pos=-61 [Jannaschia sp. CCS1]
GTCATGTTATTTCATATCAGTTA
>Jann_0313(zur) Score=5.2 Pos=-18 [Jannaschia sp. CCS1]
TAACTGATATGAAATAACATGAC
# TF - IscR: Jann_2366
>Jann_3277 Score=4.8 Pos=-31 [Jannaschia sp. CCS1]
CCTGAGTAATACACTCAAG
>Jann_3275(hemP) Score=4.4 Pos=-259 [Jannaschia sp. CCS1]
GCATACTATTTTAGTCAGG
>Jann_3275(hemP) Score=5.2 Pos=-287 [Jannaschia sp. CCS1]
TCTGAGTAAAATACTCAGG
>Jann_2132(hmuR) Score=4.4 Pos=-144 [Jannaschia sp. CCS1]
GTTGACGCTTTTAGTCGGA
>Jann_2366(iscR) Score=3 Pos=-127 [Jannaschia sp. CCS1]
GATTCCAAATTGTGTCGGG
>Jann_1208(fbpC) Score=4 Pos=-27 [Jannaschia sp. CCS1]
CCCGATTGAAAAGATCGGA
>Jann_1368(irpA) Score=4.7 Pos=-253 [Jannaschia sp. CCS1]
TCTGACAAAACAAGTCAGG
>Jann_0134(fbpB) Score=3.8 Pos=-21 [Jannaschia sp. CCS1]
CCCGACAAAAACACCAAGA
>Jann_2122(fecB) Score=5.1 Pos=-36 [Jannaschia sp. CCS1]
TCTGACTAAAATACTCAAC
>Jann_2122(fecB) Score=4.4 Pos=-61 [Jannaschia sp. CCS1]
TCTAACTATTTCTGTCAGC
>Jann_2123(fecC) Score=5.1 Pos=-59 [Jannaschia sp. CCS1]
GTTGAGTATTTTAGTCAGA
>Jann_2123(fecC) Score=4.4 Pos=-34 [Jannaschia sp. CCS1]
GCTGACAGAAATAGTTAGA
>Jann_0118(fbpA) Score=5.3 Pos=-37 [Jannaschia sp. CCS1]
CCTGACTGTTTTAGTCGGA
>Jann_0118(fbpA) Score=3.7 Pos=-94 [Jannaschia sp. CCS1]
TCAAAGTGTTTTTGTCGGA
# TF - Irr: Jann_1652
>Jann_2366(iscR) Score=5.2 Pos=-137 [Jannaschia sp. CCS1]
ACCCTAGAACGATTCCAAATT
>Jann_0865(fssA) Score=4.9 Pos=-79 [Jannaschia sp. CCS1]
ACTTTAGAACGATTCCAGTTC
>Jann_3276(dps) Score=6.3 Pos=-123 [Jannaschia sp. CCS1]
AGTTTAGAATTATTCTAGACA
# TF - NagQ: Jann_1359
>Jann_1358(nagK) Score=0.1 Pos=-100 [Jannaschia sp. CCS1]
GATACCTTTTTAATACCT
>Jann_1357(murQ) Score=-1.6 Pos=-146 [Jannaschia sp. CCS1]
AAAGCCAATACAATACCA
# TF - NtrC: Jann_2238
>Jann_2236(nifR3) Score=5.1 Pos=-54 [Jannaschia sp. CCS1]
TGCTTAATTATTGTGCA
>Jann_2232(amtB2) Score=4.3 Pos=-122 [Jannaschia sp. CCS1]
CGCCCGAATAATAGGCG
>Jann_4056(glnK) Score=4.4 Pos=-183 [Jannaschia sp. CCS1]
CGCACAAAAAACAGGCA
>Jann_1744(ureD) Score=4.2 Pos=-139 [Jannaschia sp. CCS1]
TGCCTGCGAATTAGGCA
>Jann_1516(glnB) Score=4.4 Pos=-150 [Jannaschia sp. CCS1]
TGATCATTTTTTAGGCG
>Jann_3038(nasT) Score=4.6 Pos=-56 [Jannaschia sp. CCS1]
TGCACAATACTTAATCA
>Jann_3440(gdhA) Score=4.4 Pos=-141 [Jannaschia sp. CCS1]
TGCCTGATATTTGCGCA
>Jann_3040(nrtA) Score=4.7 Pos=-269 [Jannaschia sp. CCS1]
TGCCCAAAATTCGGGCG
>Jann_3041(nrtB) Score=4.7 Pos=-138 [Jannaschia sp. CCS1]
CGCCCAAAAAATAGGCG
# TF - Mur: Jann_1799
>Jann_2080(sitA) Score=5 Pos=-88 [Jannaschia sp. CCS1]
TTTGCAACTCACTCGCAAG
>Jann_2080(sitA) Score=4.7 Pos=-58 [Jannaschia sp. CCS1]
CTTGCGAATAAGTCGCATA
# TF - LexA: Jann_1874
>Jann_2777(uvrD) Score=1.5 Pos=-56 [Jannaschia sp. CCS1]
GAACAATCTGCGAAC
>Jann_1560(imuA) Score=0.8 Pos=10 [Jannaschia sp. CCS1]
GAACAAATAGGGAAC
>Jann_1874(lexA) Score=1.3 Pos=-77 [Jannaschia sp. CCS1]
GAACATACCCTGAAC
>Jann_1986(recA) Score=0.6 Pos=-98 [Jannaschia sp. CCS1]
GAACAAGACAAGAAC
>Jann_0964(ruvC) Score=5.2 Pos=2 [Jannaschia sp. CCS1]
GTTCGCGTTTCGTGC
>Jann_1723(uvrA) Score=4.5 Pos=-82 [Jannaschia sp. CCS1]
GTTCCTGAAACGTTC
>Jann_2549(PF04055) Score=4.7 Pos=-9 [Jannaschia sp. CCS1]
GTTCTTCAAATGTTC
>Jann_1986(recA) Score=4.9 Pos=-127 [Jannaschia sp. CCS1]
GTTCTTGTTTTGTTT
>Jann_3406(PF06319) Score=5 Pos=-26 [Jannaschia sp. CCS1]
GTTCACCTATTGTTC
# TF - LiuR: Jann_2969
>Jann_2969(liuR) Score=5.2 Pos=-93 [Jannaschia sp. CCS1]
AATTACGTAAACGTCATC
# TF - RutR: Jann_2710
>Jann_1306(codA) Score=5.5 Pos=-36 [Jannaschia sp. CCS1]
ATTTTACCATATGGTAAGGA
>Jann_2709(praX) Score=5.7 Pos=-57 [Jannaschia sp. CCS1]
CCTTGACCGTTTGGTCAAAA
>Jann_2713(pydX) Score=5.8 Pos=-76 [Jannaschia sp. CCS1]
ATTTTACCATTTGATAAATT
>Jann_2710(rutR) Score=5.4 Pos=-177 [Jannaschia sp. CCS1]
TTTTGACCAAACGGTCAAGG
>Jann_0789(deoC) Score=5.6 Pos=-65 [Jannaschia sp. CCS1]
TTTTGACCGTTTGGTCAACC
# TF - PhnF: Jann_2856
>Jann_2855(phnN) Score=5.3 Pos=-29 [Jannaschia sp. CCS1]
TTGTATAATTAAATGGACAA
>Jann_2856(phnF) Score=5.3 Pos=-85 [Jannaschia sp. CCS1]
TTGTCCATTTAATTATACAA
# RNA - mini-ykkC
>Jann_1290(ykkC) Score=41.2 Pos=-66 [Jannaschia sp. CCS1]
CCCGCCGGGACGACCCGGCCATGTACGGGTAGTTGTCAGGACGACCTGC
# RNA - Cobalamin
>Jann_2934(cfrX) Score=141.5 Pos=-221 [Jannaschia sp. CCS1]
TGAACAGGGTCACGGCGATGGTGCCCTTCTTGGAGGGCCTAAGAGGGAACGCGGTGAAACCCCGCGGCTGCCCCCGCAACTGTAAGCGGTGAGCGGACCTGCGTATGCCACTGAGCCGACAAGCTCGGGAAGGCGCAGGCCCCGCCCTGACCCGCAAGCCAGGAGACCTGCCATCACCTGTGAAACGCAT
>Jann_2250(cbiW) Score=140.2 Pos=-273 [Jannaschia sp. CCS1]
CTGAAATCAAACTGGTGATGGTGTTTCGACATCCAAGACGATGTCGGACTGAAAAGGGAATACGGTGAGGACGCGCCTTAGGGCACCAAATCCGTAACTGCCCCCGCAACTGTAAGCGGTAAGCGACGCCAAATATGCCACTGGGACAGCTCCCGGGAAGGTTGGCCAAGCGTTGATCCGCAAGTCAGGAGACCTGCCATCAGGTGTTGAAACATT
# RNA - S15
>Jann_4030(rpsO) Score=14.1 Pos=-60 [Jannaschia sp. CCS1]
TGGGCCTTGCTGGACGACATCCCGGCCTGCGCCATAACCTTAACCCTGAAGGAGACCCCGATGTCGATTACGCCCGAAGAAAAAGCCCGCCTGATGAAGGAATTCGCCACCAAAGAA
# RNA - serC
>Jann_0260(serC) Score=66.7 Pos=-50 [Jannaschia sp. CCS1]
GGTGGGACACCCTTCCCCAACGAAGGGCGCATATCTGTGAGGATACCATTATG
# RNA - SAM_alpha
>Jann_1854(metY) Score=62.2 Pos=-148 [Jannaschia sp. CCS1]
CCAAGGGCCGTGGCGATTTGTGAACCGGATTGCGGGCCACGTTAAACATACCGCTAAAGAGGTCGAGGCCGCTGAAAGAC
# RNA - TPP
>Jann_0330(thiB) Score=52.9 Pos=-160 [Jannaschia sp. CCS1]
TAGCGGTACCTCGGGGGGGCTCGCGCATCTGACGATACGCTGGCCTGAGATTGCGAAAGCTGACCCGTTGAACCTGAACCGGTTAATACCGGCGGAGGGAAGGGTATCGCGGCCATCG
# RNA - Glycine
>Jann_3620(gcvT) Score=43.9 Pos=-148 [Jannaschia sp. CCS1]
GACATAACTCTGGAGAGTGAGGGCAGTGCCCCTCCGCCGAAGGGATAACGATCTCAGGCCGAAGGACAGAGGGGGCATCAG
>Jann_3620(gcvT) Score=41.3 Pos=-250 [Jannaschia sp. CCS1]
CGCAACCGTAGGGAGACTCTTGGGCGCGCAAACCACGCGCACCCCAGGGCCGAAGGAGCAACCGCCCCGGTAAACTCTCAGGCAAACGGACCTGTGGTTGT
# RNA - SAM-SAH
>Jann_0706(metK) Score=59.5 Pos=-52 [Jannaschia sp. CCS1]
CTCCTCCACAACGGCTTCCTGACGTGGGGGATTATTTGAATGGAGCATT
# TF - AglR: Jann_1945
>Jann_1945(aglR) Score=5.8 Pos=-31 [Jannaschia sp. CCS1]
AATTCCAAGCGCTTTGAAAG
>Jann_1945(aglR) Score=4.9 Pos=-204 [Jannaschia sp. CCS1]
TTTTCAAAGCGCTTTGGGGT
>Jann_1946(aglE) Score=4.9 Pos=-104 [Jannaschia sp. CCS1]
ACCCCAAAGCGCTTTGAAAA
# TF - HrcA: Jann_0207
>Jann_3359(groS) Score=6.9 Pos=-72 [Jannaschia sp. CCS1]
TTGGCACTCGCGTTCGGTGAGTGCTAA
# TF - SmoR: Jann_2901
>Jann_2901(smoR) Score=5.7 Pos=-85 [Jannaschia sp. CCS1]
ATCTTTACGCGCGAAAAGAT
>Jann_2902(smoE) Score=6.4 Pos=-89 [Jannaschia sp. CCS1]
AAATTTACGCGCGTAAAGTT
# TF - CueR: Jann_2087
>Jann_2086(copA) Score=5.5 Pos=-54 [Jannaschia sp. CCS1]
AGCTTCCAGTCACTGGAAGGT
# TF - Jann_3936: Jann_3936
>Jann_3935(RL4252) Score=6.4 Pos=-63 [Jannaschia sp. CCS1]
GATTTATAACGTTTTAATTC
>Jann_3935(RL4252) Score=5.5 Pos=-192 [Jannaschia sp. CCS1]
GATTTTAAACGTTTCAATAG
>Jann_3936(Jann_3936) Score=6.4 Pos=-194 [Jannaschia sp. CCS1]
GAATTAAAACGTTATAAATC
>Jann_3936(Jann_3936) Score=5.5 Pos=-65 [Jannaschia sp. CCS1]
CTATTGAAACGTTTAAAATC
# TF - Jann_1459: Jann_1459
>Jann_1459(Jann_1459) Score=5.4 Pos=-74 [Jannaschia sp. CCS1]
CTCTGAAATCGATTACATAC
>Jann_1460 Score=5.4 Pos=-92 [Jannaschia sp. CCS1]
GTATGTAATCGATTTCAGAG
# TF - SPO0590: Jann_1347, Jann_1397
>Jann_1397(SPO0590) Score=5.7 Pos=-79 [Jannaschia sp. CCS1]
GTGTGTAAGCCCTTACATTA
>Jann_1397(SPO0590) Score=5.1 Pos=-56 [Jannaschia sp. CCS1]
CGATGCAAGCCATTACAATT
>Jann_1347(SPO0590) Score=5.7 Pos=-118 [Jannaschia sp. CCS1]
CAATGTAAGCTGTTACAATT
>Jann_1347(SPO0590) Score=6.7 Pos=-95 [Jannaschia sp. CCS1]
AAATGCAAGCGCTTACATTT
>Jann_1349(dctP) Score=5.7 Pos=-281 [Jannaschia sp. CCS1]
AATTGTAACAGCTTACATTG
>Jann_1398(hisD1) Score=5.7 Pos=-107 [Jannaschia sp. CCS1]
TAATGTAAGGGCTTACACAC
>Jann_1398(hisD1) Score=5.1 Pos=-130 [Jannaschia sp. CCS1]
AATTGTAATGGCTTGCATCG
# TF - IolR: Jann_1424
>Jann_1425(iolK) Score=7.4 Pos=-126 [Jannaschia sp. CCS1]
TTTTGCAACCGGTTGCAAAA
>Jann_1420(iolD) Score=6.9 Pos=-97 [Jannaschia sp. CCS1]
TGTTGCAACCGCTTGCAAAA
>Jann_1421 Score=6.9 Pos=-44 [Jannaschia sp. CCS1]
TTTTGCAAGCGGTTGCAACA
>Jann_1424(iolR) Score=7.4 Pos=-95 [Jannaschia sp. CCS1]
TTTTGCAACCGGTTGCAAAA
# TF - Jann_1107: Jann_1107
>Jann_4090 Score=5.7 Pos=-93 [Jannaschia sp. CCS1]
GGGTGCATACGAATGCAAAA
>Jann_3701(Jann_3701) Score=6.4 Pos=-36 [Jannaschia sp. CCS1]
TCTTGCAAACCTATGCAAAA
>Jann_2640(Jann_2640) Score=6.6 Pos=-86 [Jannaschia sp. CCS1]
TTTTGCAAACCTATGCAAAA
>Jann_1104(PF00815) Score=5.9 Pos=-81 [Jannaschia sp. CCS1]
TTTTGCAATCGTATGCAGAT
# TF - AfrR: Jann_3927
>Jann_3931 Score=5.4 Pos=-35 [Jannaschia sp. CCS1]
GAATTGGAACGTTCCAGAAG
>Jann_3940(afr) Score=5.5 Pos=-58 [Jannaschia sp. CCS1]
ATTGTGGAACGTTCCAATTA
>Jann_3940(afr) Score=5.8 Pos=-33 [Jannaschia sp. CCS1]
AAATCGGAACGTTCCAATTT
# TF - CceR (GapR): Jann_0311
>Jann_1953(edd) Score=5.8 Pos=-55 [Jannaschia sp. CCS1]
ACATGTTAGCGCTAACATGA
>Jann_1969(zwf) Score=5.8 Pos=-37 [Jannaschia sp. CCS1]
CGCTGTTAGCGCTAACGTGA
>Jann_1695(gapB) Score=5.4 Pos=-63 [Jannaschia sp. CCS1]
CCCTGTTACCGCTAACACAC
>Jann_0447(pykA) Score=5.3 Pos=-80 [Jannaschia sp. CCS1]
GACTGATAGCGCAAACATCG
>Jann_0535(pckA) Score=4.9 Pos=-138 [Jannaschia sp. CCS1]
GTATGGTTGCGCTAACTGTG
>Jann_1698(gapA) Score=4.9 Pos=-128 [Jannaschia sp. CCS1]
CCGTGTTAGCGCCACCACCC
>Jann_1698(gapA) Score=4.6 Pos=-109 [Jannaschia sp. CCS1]
CGATGTTTGCGCCACCGTTT
>Jann_1698(gapA) Score=5.2 Pos=-97 [Jannaschia sp. CCS1]
CACCGTTTCCGCTAACATGC
>Jann_0818(mdh) Score=4.1 Pos=-101 [Jannaschia sp. CCS1]
GGGCGTTGGGGCTATCGGCC
>Jann_1032(tal) Score=5.7 Pos=-71 [Jannaschia sp. CCS1]
TTCCGTTAGCGCTAACATGC
>Jann_2674(scrK) Score=4.8 Pos=-40 [Jannaschia sp. CCS1]
AAAGGTTACCGCTAACACGT
>Jann_1699(yedI) Score=4.9 Pos=-148 [Jannaschia sp. CCS1]
GGGTGGTGGCGCTAACACGG
>Jann_1699(yedI) Score=4.6 Pos=-167 [Jannaschia sp. CCS1]
AAACGGTGGCGCAAACATCG
>Jann_1699(yedI) Score=5.2 Pos=-179 [Jannaschia sp. CCS1]
GCATGTTAGCGGAAACGGTG
>Jann_1797(eno) Score=5.4 Pos=-84 [Jannaschia sp. CCS1]
GCCTGTTACCGCTAACGGAA
>Jann_1693(fba) Score=4.8 Pos=-80 [Jannaschia sp. CCS1]
GCCTGATAGCGCAACCATGA
# TF - MetR: Jann_1027
>Jann_2547(bhmT) Score=4.2 Pos=-90 [Jannaschia sp. CCS1]
ATGAAAATGATGCAT
# TF - PpsR: Jann_0164
>Jann_0144(crtA) Score=5.1 Pos=-110 [Jannaschia sp. CCS1]
TGTCCATATTAGTTGACA
>Jann_0162(bchF) Score=5.4 Pos=-73 [Jannaschia sp. CCS1]
TGTAAGTTTAGATTGACA
>Jann_0144(crtA) Score=5.3 Pos=-34 [Jannaschia sp. CCS1]
TGTCAGACTTGGTTGACA
>Jann_0300(hcaR) Score=5.2 Pos=-67 [Jannaschia sp. CCS1]
TGTAAGGTTGAGTTGACA
>Jann_0143(crtI) Score=5.3 Pos=-87 [Jannaschia sp. CCS1]
TGTCAACCAAGTCTGACA
>Jann_0143(crtI) Score=5.1 Pos=-11 [Jannaschia sp. CCS1]
TGTCAACTAATATGGACA
>Jann_0163(ppaA) Score=5.4 Pos=-262 [Jannaschia sp. CCS1]
TGTCAATCTAAACTTACA
>Jann_0163(ppaA) Score=4.6 Pos=-119 [Jannaschia sp. CCS1]
TGTCTAATTTCTATGACA
>Jann_0180(bchC) Score=5 Pos=-125 [Jannaschia sp. CCS1]
TGTCTATTCACGTTGACA
>Jann_0180(bchC) Score=5.4 Pos=-99 [Jannaschia sp. CCS1]
TGTCAGGTTAAACTGACA
>Jann_0165(bchG) Score=4.5 Pos=-56 [Jannaschia sp. CCS1]
CGTAAACCTGAGTTTACA
>Jann_0165(bchG) Score=5.4 Pos=-21 [Jannaschia sp. CCS1]
TGTCAGCCTAAGCTGACA
>Jann_0183(crtD) Score=4.8 Pos=-50 [Jannaschia sp. CCS1]
TGTAAATCAGACTGGACA
>Jann_0183(crtD) Score=5.2 Pos=-19 [Jannaschia sp. CCS1]
TGTCAACATTGACTGACA
>Jann_0182(crtE) Score=5.2 Pos=-98 [Jannaschia sp. CCS1]
TGTCAGTCAATGTTGACA
>Jann_0182(crtE) Score=4.8 Pos=-67 [Jannaschia sp. CCS1]
TGTCCAGTCTGATTTACA
>Jann_3845(hemC) Score=5.4 Pos=-34 [Jannaschia sp. CCS1]
TGTCAAGCCAAGTTGACA
>Jann_3846(hemE) Score=5.4 Pos=-86 [Jannaschia sp. CCS1]
TGTCAACTTGGCTTGACA
>Jann_1581 Score=5.2 Pos=-163 [Jannaschia sp. CCS1]
TGTCAATCATGATTTACA
>Jann_1581 Score=4.9 Pos=-138 [Jannaschia sp. CCS1]
TGTCAGTTAATTGTGACA
>Jann_0162(bchF) Score=4.6 Pos=-216 [Jannaschia sp. CCS1]
TGTCATAGAAATTAGACA
# TF - Pden_3389: Jann_1164
>Jann_1162(sgaA) Score=4.2 Pos=-83 [Jannaschia sp. CCS1]
CGATTGTATGCATAAT
>Jann_1163(dld2) Score=4.2 Pos=-58 [Jannaschia sp. CCS1]
ATTATGCATACAATCG
# TF - TauR: Jann_2850
>Jann_1443(bisC) Score=8.8 Pos=-120 [Jannaschia sp. CCS1]
TTGGTCTCAA------------CTGGCCCTAT
>Jann_1443(bisC) Score=8 Pos=-97 [Jannaschia sp. CCS1]
CTGGCCCTAT------------TTGGCCATAG
>Jann_2846(xsc) Score=8.6 Pos=-106 [Jannaschia sp. CCS1]
CTGGCCTTAT------------TTGGCCCTAC
>Jann_2848(COG161(BioA)) Score=8.8 Pos=-106 [Jannaschia sp. CCS1]
CTGGCCTTAC------------CTGGCCCTAC
# TF - FnrN: Jann_3858
>Jann_3858(fnrN) Score=5.4 Pos=-56 [Jannaschia sp. CCS1]
GCATTGATTTGGATCAAGCG
>Jann_1933(hemA) Score=5.9 Pos=-67 [Jannaschia sp. CCS1]
CCTTTGATCCAGATCAAAGC
>Jann_3859(hemN) Score=5.4 Pos=-51 [Jannaschia sp. CCS1]
CGCTTGATCCAAATCAATGC
>Jann_3857(ccoN) Score=5.6 Pos=-126 [Jannaschia sp. CCS1]
GGCTTGACCCAGATCAAGGT
>Jann_3853(ccoG) Score=5.4 Pos=-84 [Jannaschia sp. CCS1]
AACTTGATCCACGTCAAAGC