Regulon of HypR2 in Silicibacter pomeroyi DSS-3

Properties
Regulator type:	Transcription factor
TF locus tag:	SPOA0261
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Proline and 4-hydrohyproline utilization
Effector:	4-hydroxyproline
Regulog:	HypR2 - Rhodobacterales
Statistics of regulated genes:
- Genes	8
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 17 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By trascription factor - HypR
By TF family - GntR/Others
By effector - 4-hydroxyproline
By pathway - Proline and 4-hydrohyproline utilization

Regulated operons
	Locus Tag	Name	Function
Position: -64 Score: 5.2 Sequence: TTTTGGATACATTA Locus tag: SPOA0260 Name: hypH Funciton: Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
	SPOA0260	hypH	Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) # hydroxy-L-proline-inducible
Position: -172 Score: 5 Sequence: TTCTGTATCCAAAA Position: -38 Score: 4.1 Sequence: ATCTGTATCCGAAA Locus tag: SPOA0267 Name: hypD Funciton: 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted Locus tag: SPOA0266 Name: hypE Funciton: Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8) Locus tag: SPOA0265 Name: COG4663 Funciton: TRAP-type C4-dicarboxylate transport system, periplasmic component Locus tag: SPOA0264 Name: COG3090 Funciton: TRAP-type C4-dicarboxylate transport system, small permease component Locus tag: SPOA0263 Name: COG4664 Funciton: TRAP-type C4-dicarboxylate transport system, large permease component Locus tag: SPOA0262 Name: hypO Funciton: D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster Locus tag: SPOA0261 Name: hypR2 Funciton: Predicted regulator for proline and hydrohyproline utilization, GntR family
	SPOA0267	hypD	1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) # predicted
	SPOA0266	hypE	Proline racemase /4-hydroxyproline epimerase (EC 5.1.1.8)
	SPOA0265	COG4663	TRAP-type C4-dicarboxylate transport system, periplasmic component
	SPOA0264	COG3090	TRAP-type C4-dicarboxylate transport system, small permease component
	SPOA0263	COG4664	TRAP-type C4-dicarboxylate transport system, large permease component
	SPOA0262	hypO	D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster
	SPOA0261	hypR2	Predicted regulator for proline and hydrohyproline utilization, GntR family

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD