Regulon of PsrA in Shewanella frigidimarina NCIMB 400

Properties
Regulator type:	Transcription factor
TF locus tag:	Sfri_1888
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Regulog:	PsrA - Shewanellaceae
Statistics of regulated genes:
- Genes	25
- Operons	16
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 295 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - PsrA
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -161 Score: 6.1 Sequence: AATTAAACGGCCGTTTAAAT Locus tag: Sfri_0013 Name: fadB Funciton: fatty oxidation complex, alpha subunit Locus tag: Sfri_0012 Name: fadA Funciton: fatty oxidation complex, beta subunit
	Sfri_0013	fadB	fatty oxidation complex, alpha subunit
	Sfri_0012	fadA	fatty oxidation complex, beta subunit
Position: -136 Score: 5.4 Sequence: TTGTAAACGCCTGTTTAAAA Locus tag: Sfri_2677 Name: fadI Funciton: fatty oxidation complex, beta subunit Locus tag: Sfri_2676 Name: fadJ Funciton: fatty oxidation complex, alpha subunit
	Sfri_2677	fadI	fatty oxidation complex, beta subunit
	Sfri_2676	fadJ	fatty oxidation complex, alpha subunit
Position: -86 Score: 4.6 Sequence: TATTAATCATTTGTTTCAAA Position: -73 Score: 5.3 Sequence: TTTCAAACGGTCGTTTATTT Locus tag: Sfri_2572 Name: SO2935 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
	Sfri_2572	SO2935	oxidoreductase, short-chain dehydrogenase/reductase family
Position: -105 Score: 5.7 Sequence: ATTTAAACGCTTATTTAAAT Locus tag: Sfri_2348 Name: gltA Funciton: citrate synthase
	Sfri_2348	gltA	citrate synthase
Position: -324 Score: 5.7 Sequence: ATTTAAATAAGCGTTTAAAT Locus tag: Sfri_2347 Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit Locus tag: Sfri_2346 Name: sdhD Funciton: succinate dehydrogenase subunit D Locus tag: Sfri_2345 Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit Locus tag: Sfri_2344 Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein
	Sfri_2347	sdhC	succinate dehydrogenase, cytochrome b556 subunit
	Sfri_2346	sdhD	succinate dehydrogenase subunit D
	Sfri_2345	sdhA	succinate dehydrogenase, flavoprotein subunit
	Sfri_2344	sdhB	succinate dehydrogenase, iron-sulfur protein
Position: -81 Score: 5.8 Sequence: AGTTAAACAGATGTTTGAAT Locus tag: Sfri_3336 Name: echH Funciton: enoyl-CoA hydratase/isomerase family protein
	Sfri_3336	echH	enoyl-CoA hydratase/isomerase family protein
Position: -81 Score: 6.1 Sequence: ATTTAAACGTATGTTTAAAT Locus tag: Sfri_3287 Name: SO0881 Funciton: conserved hypothetical protein Locus tag: Sfri_3286 Name: SO0882 Funciton: oxidoreductase, GMC family
	Sfri_3287	SO0881	conserved hypothetical protein
	Sfri_3286	SO0882	oxidoreductase, GMC family
Position: -40 Score: 6.1 Sequence: ATTAAAACAACTGTTTTAAT Locus tag: Sfri_2115 Name: acdH Funciton: acyl-CoA dehydrogenase family protein
	Sfri_2115	acdH	acyl-CoA dehydrogenase family protein
Position: -122 Score: 5.4 Sequence: ATGTAAACAGTCGTTTGACT Locus tag: Sfri_2748 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Sfri_2747 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Sfri_2748	etfB	electron transfer flavoprotein, beta subunit
	Sfri_2747	etfA	electron transfer flavoprotein, alpha subunit
Position: -44 Score: 6.1 Sequence: ATTTAAACAAGCGTTTAATT Locus tag: Sfri_3968 Name: SO0080 Funciton: thioesterase superfamily protein
	Sfri_3968	SO0080	thioesterase superfamily protein
Position: -150 Score: 5.9 Sequence: ATTTAAACAATTGTTTGAAA Locus tag: Sfri_1869 Name: fadE2 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Sfri_1869	fadE2	oxidoreductase, acyl-CoA dehydrogenase family
Position: -592 Score: 5.9 Sequence: TTTAAAACAGTTGTTTAAAT Locus tag: Sfri_1101 Name: aceB Funciton: malate synthase A Locus tag: Sfri_1102 Name: aceA Funciton: isocitrate lyase
	Sfri_1101	aceB	malate synthase A
	Sfri_1102	aceA	isocitrate lyase
Position: -55 Score: 5.5 Sequence: ATCTAAACGGACGTTTGATT Locus tag: Sfri_3097 Name: fadD2 Funciton: long-chain-fatty-acid--CoA ligase
	Sfri_3097	fadD2	long-chain-fatty-acid--CoA ligase
Position: -36 Score: 6.3 Sequence: ATTTAAACAGGTGTTTAAAT Locus tag: Sfri_1888 Name: psrA Funciton: fatty acid degradation transcriptional regulator, TetR family Locus tag: Sfri_1889 Name: fadE1 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Sfri_1888	psrA	fatty acid degradation transcriptional regulator, TetR family
	Sfri_1889	fadE1	oxidoreductase, acyl-CoA dehydrogenase family
Position: -84 Score: 5.3 Sequence: TAACAAACGAGCGTTTAAAT Position: -31 Score: 5 Sequence: TTTAAATCACTTGTTTAAAA Position: -18 Score: 5.4 Sequence: TTTAAAAAGGATGTTTGAAT Locus tag: Sfri_2144 Name: fadH Funciton: NADP-dependent 2,4-dienoyl-CoA reductase
	Sfri_2144	fadH	NADP-dependent 2,4-dienoyl-CoA reductase
Position: -145 Score: 5.2 Sequence: ATTAAAACACTTGTATGACT Locus tag: Sfri_1733 Name: fadD1 Funciton: long-chain-fatty-acid--CoA ligase
	Sfri_1733	fadD1	long-chain-fatty-acid--CoA ligase

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of PsrA in Shewanella frigidimarina NCIMB 400

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --