Regulon of PsrA in Shewanella putrefaciens CN-32

Properties
Regulator type:	Transcription factor
TF locus tag:	Sputcn32_1862
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid degradation
Effector:	Oleate
Regulog:	PsrA - Shewanellaceae
Statistics of regulated genes:
- Genes	26
- Operons	17
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 295 sites [see more]

Member of regulog collections

By taxonomy - Shewanellaceae
By trascription factor - PsrA
By TF family - TetR
By effector - Oleate
By pathway - Fatty acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -42 Score: 5 Sequence: ATTCGAACGCACGTTTAACT Locus tag: Sputcn32_3181 Name: Sbal_0657 Funciton: hypothetical protein
	Sputcn32_3181	Sbal_0657	hypothetical protein
Position: -70 Score: 5.4 Sequence: AATAAAACGCCCGTTTACAA Locus tag: Sputcn32_0388 Name: etfD Funciton: electron-transferring-flavoprotein dehydrogenase
	Sputcn32_0388	etfD	electron-transferring-flavoprotein dehydrogenase
Position: -86 Score: 4.5 Sequence: TTTCATTCATTTGTTTGAAA Position: -73 Score: 4.5 Sequence: TTTGAAACATGCGTTTATCA Locus tag: Sputcn32_2396 Name: SO2935 Funciton: oxidoreductase, short-chain dehydrogenase/reductase family
	Sputcn32_2396	SO2935	oxidoreductase, short-chain dehydrogenase/reductase family
Position: -331 Score: 5.7 Sequence: ATTTAAATAAGCGTTTAAAT Locus tag: Sputcn32_2273 Name: sdhC Funciton: succinate dehydrogenase, cytochrome b556 subunit Locus tag: Sputcn32_2272 Name: sdhD Funciton: succinate dehydrogenase subunit D Locus tag: Sputcn32_2271 Name: sdhA Funciton: succinate dehydrogenase, flavoprotein subunit Locus tag: Sputcn32_2270 Name: sdhB Funciton: succinate dehydrogenase, iron-sulfur protein
	Sputcn32_2273	sdhC	succinate dehydrogenase, cytochrome b556 subunit
	Sputcn32_2272	sdhD	succinate dehydrogenase subunit D
	Sputcn32_2271	sdhA	succinate dehydrogenase, flavoprotein subunit
	Sputcn32_2270	sdhB	succinate dehydrogenase, iron-sulfur protein
Position: -80 Score: 6.1 Sequence: AATTAAACATCTGTTTGAAT Locus tag: Sputcn32_0764 Name: echH Funciton: enoyl-CoA hydratase/isomerase family protein
	Sputcn32_0764	echH	enoyl-CoA hydratase/isomerase family protein
Position: -41 Score: 6.1 Sequence: ATTAAAACAACTGTTTTAAT Locus tag: Sputcn32_2035 Name: acdH Funciton: acyl-CoA dehydrogenase family protein
	Sputcn32_2035	acdH	acyl-CoA dehydrogenase family protein
Position: -77 Score: 5.9 Sequence: ATTAAAACGTATGTTTAATT Locus tag: Sputcn32_3121 Name: SO0881 Funciton: conserved hypothetical protein Locus tag: Sputcn32_3120 Name: SO0882 Funciton: oxidoreductase, GMC family
	Sputcn32_3121	SO0881	conserved hypothetical protein
	Sputcn32_3120	SO0882	oxidoreductase, GMC family
Position: -121 Score: 5.2 Sequence: ATGCAAACAGTCGTTTGAGT Locus tag: Sputcn32_2511 Name: etfB Funciton: electron transfer flavoprotein, beta subunit Locus tag: Sputcn32_2510 Name: etfA Funciton: electron transfer flavoprotein, alpha subunit
	Sputcn32_2511	etfB	electron transfer flavoprotein, beta subunit
	Sputcn32_2510	etfA	electron transfer flavoprotein, alpha subunit
Position: -66 Score: 5.5 Sequence: ATCTAAACATATGTTTGATT Locus tag: Sputcn32_0970 Name: fadD2 Funciton: long-chain-fatty-acid--CoA ligase
	Sputcn32_0970	fadD2	long-chain-fatty-acid--CoA ligase
Position: -156 Score: 5.9 Sequence: ATTTAAACAATTGTTTGAAA Locus tag: Sputcn32_1791 Name: fadE2 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Sputcn32_1791	fadE2	oxidoreductase, acyl-CoA dehydrogenase family
Position: -38 Score: 5.9 Sequence: ATTTAAACGAGTGTTTTAAA Locus tag: Sputcn32_1862 Name: psrA Funciton: fatty acid degradation transcriptional regulator, TetR family Locus tag: Sputcn32_1863 Name: fadE1 Funciton: oxidoreductase, acyl-CoA dehydrogenase family
	Sputcn32_1862	psrA	fatty acid degradation transcriptional regulator, TetR family
	Sputcn32_1863	fadE1	oxidoreductase, acyl-CoA dehydrogenase family
Position: -168 Score: 5.4 Sequence: AAACAAACAGGTGTTTAAAA Locus tag: Sputcn32_2460 Name: fadI Funciton: fatty oxidation complex, beta subunit Locus tag: Sputcn32_2459 Name: fadJ Funciton: fatty oxidation complex, alpha subunit
	Sputcn32_2460	fadI	fatty oxidation complex, beta subunit
	Sputcn32_2459	fadJ	fatty oxidation complex, alpha subunit
Position: -162 Score: 6.1 Sequence: AATTAAACAGTCGTTTAAAT Locus tag: Sputcn32_0013 Name: fadB Funciton: fatty oxidation complex, alpha subunit Locus tag: Sputcn32_0012 Name: fadA Funciton: fatty oxidation complex, beta subunit
	Sputcn32_0013	fadB	fatty oxidation complex, alpha subunit
	Sputcn32_0012	fadA	fatty oxidation complex, beta subunit
Position: -31 Score: 5 Sequence: TTTAAATCACTTGTTTTAAA Position: -18 Score: 5.4 Sequence: TTTTAAAAGGATGTTTGAAT Locus tag: Sputcn32_2077 Name: fadH Funciton: NADP-dependent 2,4-dienoyl-CoA reductase
	Sputcn32_2077	fadH	NADP-dependent 2,4-dienoyl-CoA reductase
Position: -135 Score: 5.4 Sequence: ATTAAAACGCTCGTATGATT Locus tag: Sputcn32_1761 Name: fadD1 Funciton: long-chain-fatty-acid--CoA ligase
	Sputcn32_1761	fadD1	long-chain-fatty-acid--CoA ligase
Position: -439 Score: 5.9 Sequence: AATTAAACGGTCGTTTTAAT Locus tag: Sputcn32_1238 Name: aceB Funciton: malate synthase A Locus tag: Sputcn32_1239 Name: aceA Funciton: isocitrate lyase
	Sputcn32_1238	aceB	malate synthase A
	Sputcn32_1239	aceA	isocitrate lyase
Position: -105 Score: 5.7 Sequence: ATTTAAACGCTTATTTAAAT Locus tag: Sputcn32_2274 Name: gltA Funciton: citrate synthase
	Sputcn32_2274	gltA	citrate synthase

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of PsrA in Shewanella putrefaciens CN-32

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --