Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of GcvA in Shewanella frigidimarina NCIMB 400

Properties
Regulator type: Transcription factor
TF locus tag: Sfri_2783
Regulator family: LysR
Regulation mode: activator (repressor)
Biological process: Glycine metabolism
Effector: Glycine
Regulog: GcvA - Shewanellaceae
Statistics of regulated genes:
- Genes 9
- Operons 5
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 108 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -171
Score: 4.3
Sequence: ATTATTAAAACTATT
Position: -96
Score: 5
Sequence: ATTAGATTAATTAAT
Locus tag: Sfri_0596
Name: SO3342
Funciton: putative membrane protein
SO3342
putative membrane protein

Position: -140
Score: 4.5
Sequence: ATCAAAAAATCTAAT
Locus tag: Sfri_2402
Name: sdaA
Funciton: L-serine dehydratase 1 (EC 4.3.1.17)
sdaA
L-serine dehydratase 1 (EC 4.3.1.17)

Position: -131
Score: 5.2
Sequence: ATTAGCTAAACTAAT
Locus tag: Sfri_3151
Name: gcvT
Funciton: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
Locus tag: Sfri_3150
Name: gcvH
Funciton: Glycine cleavage system H protein
Locus tag: Sfri_3149
Name: gcvP
Funciton: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
gcvT
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH
Glycine cleavage system H protein
gcvP
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)

Position: -38
Score: 5.6
Sequence: ATTAGAAAAACTAAT
Locus tag: Sfri_2783
Name: gcvA
Funciton: Glycine cleavage system transcriptional activator GcvA
Locus tag: Sfri_2782
Name: SO1534
Funciton: Predicted hydrolase of the alpha/beta-hydrolase fold
gcvA
Glycine cleavage system transcriptional activator GcvA
SO1534
Predicted hydrolase of the alpha/beta-hydrolase fold

Position: -191
Score: 5
Sequence: ATTAGTTTTTTTAAT
Locus tag: Sfri_3938
Name: kbl
Funciton: 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
Locus tag: Sfri_3939
Name: tdh
Funciton: L-threonine 3-dehydrogenase (EC 1.1.1.103)
kbl
2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29)
tdh
L-threonine 3-dehydrogenase (EC 1.1.1.103)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD