Regulon of IdnR in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type:	Transcription factor
TF locus tag:	Atu4685
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Idonate utilization
Effector:	L-idonate
Regulog:	IdnR - Rhizobiales
Statistics of regulated genes:
- Genes	10
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 32 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By TF family - LacI
By effector - L-idonate
By pathway - Idonate utilization

Regulated operons
	Locus Tag	Name	Function
Position: -177 Score: 6.4 Sequence: ATATGTTACCGATAACATTC Locus tag: Atu4087 Name: idnD Funciton: L-idonate 5-dehydrogenase (EC 1.1.1.264)
	Atu4087	idnD	L-idonate 5-dehydrogenase (EC 1.1.1.264)
Position: -245 Score: 5.7 Sequence: CAATGATACCGATAACATGC Position: -83 Score: 6.4 Sequence: AAATGTTATCGAGAACATTT Locus tag: Atu4687 Name: Atu4687 Funciton: putative ABC transporter, substrate-binding component Locus tag: Atu4688 Name: Atu4688 Funciton: putative ABC transporter, membrane spanning protein Locus tag: Atu4689 Name: Atu4689 Funciton: putative ABC transporter, membrane spanning protein Locus tag: Atu4690 Name: Atu4690 Funciton: putative ABC transporter, ATPase protein Locus tag: Atu4691 Name: COG1063 Funciton: Threonine dehydrogenase and related Zn-dependent dehydrogenases
	Atu4687	Atu4687	putative ABC transporter, substrate-binding component
	Atu4688	Atu4688	putative ABC transporter, membrane spanning protein
	Atu4689	Atu4689	putative ABC transporter, membrane spanning protein
	Atu4690	Atu4690	putative ABC transporter, ATPase protein
	Atu4691	COG1063	Threonine dehydrogenase and related Zn-dependent dehydrogenases
Position: -58 Score: 6.4 Sequence: GAATGTTATCGGTAACATAT Locus tag: Atu4086 Name: idnO Funciton: Gluconate 5-dehydrogenase (EC 1.1.1.69) Locus tag: Atu4085 Name: gnd Funciton: 6-phosphogluconate dehydrogenase EC=1.1.1.44
	Atu4086	idnO	Gluconate 5-dehydrogenase (EC 1.1.1.69)
	Atu4085	gnd	6-phosphogluconate dehydrogenase EC=1.1.1.44
Position: -232 Score: 6.4 Sequence: AAATGTTCTCGATAACATTT Position: -70 Score: 5.7 Sequence: GCATGTTATCGGTATCATTG Locus tag: Atu4686 Name: SSF54909 Funciton: Dimeric alpha-beta barrel Locus tag: Atu4685 Name: idnR Funciton: Predicted transcriptional regulator of L-idonate utilization, LacI family
	Atu4686	SSF54909	Dimeric alpha-beta barrel
	Atu4685	idnR	Predicted transcriptional regulator of L-idonate utilization, LacI family

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