Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of GlxR in Corynebacterium diphtheriae NCTC 13129

Properties
Regulator type: Transcription factor
TF locus tag: DIP0303
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Energy metabolism; Carbohydrate metabolism
Effector: Cyclic 3',5'-AMP
Regulog: GlxR - Corynebacteriaceae
Statistics of regulated genes:
- Genes 80
- Operons 44
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 562 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -109
Score: 3.6
Sequence: TGTGAATACACTAACA
Locus tag: DIP0299
Name: whiB4
Funciton: Predicted transcriptional regulator, WhiB family
DIP0299
whiB4
Predicted transcriptional regulator, WhiB family
Position: -232
Score: 3.8
Sequence: AGTGATTTTGTACACC
Position: -70
Score: 3.5
Sequence: TGTACTGCGCACCACA
Locus tag: DIP0369
Name: ramB
Funciton: Acetate metabolism transcriptional regulator RamB, XRE family
DIP0369
ramB
Acetate metabolism transcriptional regulator RamB, XRE family
Position: -356
Score: 4.3
Sequence: TGTGATAACCTTCACA
Locus tag: DIP1310
Name: gap
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Locus tag: DIP1309
Name: pgk
Funciton: Phosphoglycerate kinase (EC 2.7.2.3)
Locus tag: DIP1308
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
DIP1310
gap
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
DIP1309
pgk
Phosphoglycerate kinase (EC 2.7.2.3)
DIP1308
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
Position: -56
Score: 4
Sequence: AGTGCTTTGTTTCACA
Locus tag: DIP0646
Name: pyc
Funciton: Pyruvate carboxyl transferase (EC 6.4.1.1)
DIP0646
pyc
Pyruvate carboxyl transferase (EC 6.4.1.1)
Position: -496
Score: 4.4
Sequence: AGTGATGCTCGTCACT
Locus tag: DIP1889
Name: ramA
Funciton: Acetate metabolism transcriptional regulator RamA, LuxR family
DIP1889
ramA
Acetate metabolism transcriptional regulator RamA, LuxR family
Position: -157
Score: 3.7
Sequence: AGTGACTCAACACATA
Position: -137
Score: 3.9
Sequence: GGTGATCTAGGAAACA
Locus tag: DIP0303
Name: glxR
Funciton: Carbohydrate and energy metabolism global transcriptional regulator GlxR, Crp family
DIP0303
glxR
Carbohydrate and energy metabolism global transcriptional regulator GlxR, Crp family
Position: -85
Score: 3.6
Sequence: AGTGCGTTACCTAACA
Locus tag: DIP1910
Name: pstS
Funciton: Phosphate ABC transport system, substrate-binding protein
Locus tag: DIP1909
Name: pstC
Funciton: Phosphate ABC transport system, permease protein 1
Locus tag: DIP1908
Name: pstA
Funciton: Phosphate ABC transport system, permease protein 2
DIP1910
pstS
Phosphate ABC transport system, substrate-binding protein
DIP1909
pstC
Phosphate ABC transport system, permease protein 1
DIP1908
pstA
Phosphate ABC transport system, permease protein 2
Position: -430
Score: 3.8
Sequence: AGCGGCCTATGTCACA
Locus tag: DIP0254
Name: gntK
Funciton: Gluconokinase (EC 2.7.1.12)
DIP0254
gntK
Gluconokinase (EC 2.7.1.12)
Position: -260
Score: 4.2
Sequence: TGTGATCCTTAACACT
Locus tag: DIP0712
Name: whiB1
Funciton: Predicted transcriptional regulator, WhiB family
DIP0712
whiB1
Predicted transcriptional regulator, WhiB family
Position: -287
Score: 4.1
Sequence: TGTGGCACACATAACA
Locus tag: DIP0784
Name: serC
Funciton: Phosphoserine aminotransferase (EC 2.6.1.52)
DIP0784
serC
Phosphoserine aminotransferase (EC 2.6.1.52)
Position: -55
Score: 3.4
Sequence: GGTGTTTTTTCACACT
Locus tag: DIP0931
Name: coaA
Funciton: Pantothenate kinase (EC 2.7.1.33)
DIP0931
coaA
Pantothenate kinase (EC 2.7.1.33)
Position: -346
Score: 4.2
Sequence: GGTGAGTTGGATCACA
Locus tag: DIP0311
Name: cg0360
Funciton: Predicted phosphatase
DIP0311
cg0360
Predicted phosphatase
Position: -69
Score: 3.7
Sequence: TGTAAGGTGCGACACT
Locus tag: DIP1018
Name: deaD
Funciton: Cold shock ATP-dependent RNA helicase
DIP1018
deaD
Cold shock ATP-dependent RNA helicase
Position: -246
Score: 3.8
Sequence: TATGAGAAAAAACACA
Locus tag: DIP0501
Name: narK
Funciton: Nitrate/nitrite transporter
Locus tag: DIP0500
Name: narG
Funciton: Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
Locus tag: DIP0499
Name: narH
Funciton: Respiratory nitrate reductase beta chain (EC 1.7.99.4)
Locus tag: DIP0498
Name: null
Funciton: Respiratory nitrate reductase delta chain (EC 1.7.99.4)
Locus tag: DIP0497
Name: narI
Funciton: Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
DIP0501
narK
Nitrate/nitrite transporter
DIP0500
narG
Respiratory nitrate reductase alpha chain (EC 1.7.99.4)
DIP0499
narH
Respiratory nitrate reductase beta chain (EC 1.7.99.4)
DIP0498
Respiratory nitrate reductase delta chain (EC 1.7.99.4)
DIP0497
narI
Respiratory nitrate reductase gamma chain (EC 1.7.99.4)
Position: -87
Score: 3.5
Sequence: TGTGATTCCCGCCAAA
Locus tag: DIP1088
Name: pfkA
Funciton: 6-phosphofructokinase (EC 2.7.1.11)
DIP1088
pfkA
6-phosphofructokinase (EC 2.7.1.11)
Position: -282
Score: 4.5
Sequence: TGTGAGATAACCCACA
Locus tag: DIP1627
Name: ctaE
Funciton: Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Locus tag: DIP1626
Name: qcrC
Funciton: Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: DIP1625
Name: qcrA
Funciton: Ubiquinol-cytochrome C reductase, iron-sulfur subunit (EC 1.10.2.2)
Locus tag: DIP1624
Name: qcrB
Funciton: Ubiquinol cytochrome C oxidoreductase, cytochrome B subunit (EC 1.10.2.2)
DIP1627
ctaE
Cytochrome c oxidase polypeptide III (EC 1.9.3.1)
DIP1626
qcrC
Ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
DIP1625
qcrA
Ubiquinol-cytochrome C reductase, iron-sulfur subunit (EC 1.10.2.2)
DIP1624
qcrB
Ubiquinol cytochrome C oxidoreductase, cytochrome B subunit (EC 1.10.2.2)
Position: -74
Score: 4
Sequence: AGTGGTATAAGCCACT
Locus tag: DIP1300
Name: ctaA
Funciton: Cytochrome oxidase assembly protein
DIP1300
ctaA
Cytochrome oxidase assembly protein
Position: 8
Score: 3.8
Sequence: CGTGATGACAGACACA
Locus tag: DIP1428
Name: ptsI
Funciton: Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
DIP1428
ptsI
Phosphoenolpyruvate-protein phosphotransferase of PTS system (EC 2.7.3.9)
Position: -121
Score: 3.8
Sequence: TGTGTAGAGTCTCACT
Locus tag: DIP1547
Name: gdh
Funciton: NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
DIP1547
gdh
NADP-specific glutamate dehydrogenase (EC 1.4.1.4)
Position: -162
Score: 3.9
Sequence: TGTAAGGTATATCTCA
Locus tag: DIP2255
Name: ldh
Funciton: L-lactate dehydrogenase (EC 1.1.1.27)
Locus tag: DIP2254
Name: glpQ
Funciton: Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
Locus tag: DIP2253
Name: cg3214
Funciton: Conserved hypothetical protein
DIP2255
ldh
L-lactate dehydrogenase (EC 1.1.1.27)
DIP2254
glpQ
Glycerophosphoryl diester phosphodiesterase (EC 3.1.4.46)
DIP2253
cg3214
Conserved hypothetical protein
Position: -134
Score: 4.2
Sequence: TGTGACTTGGGTAACT
Position: -102
Score: 4.3
Sequence: TGTGGTGCAGCACACA
Locus tag: DIP0790
Name: cg0952
Funciton: Putative membrane protein
Locus tag: DIP0791
Name: mctC
Funciton: Monocarboxylic acid transporter
DIP0790
cg0952
Putative membrane protein
DIP0791
mctC
Monocarboxylic acid transporter
Position: -57
Score: 4.2
Sequence: TGGGATATGAGTCACA
Locus tag: DIP1863
Name: serB
Funciton: Phosphoserine phosphatase (EC 3.1.3.3)
Locus tag: DIP1862
Name: cg2778
Funciton: Putative hydrolase
DIP1863
serB
Phosphoserine phosphatase (EC 3.1.3.3)
DIP1862
cg2778
Putative hydrolase
Position: -227
Score: 4
Sequence: TGTGGCGATAGTCACC
Locus tag: DIP1864
Name: ctaD
Funciton: Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
DIP1864
ctaD
Cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Position: -106
Score: 4.2
Sequence: TGTGACGTGTATCTCC
Locus tag: DIP2180
Name: pck
Funciton: Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
DIP2180
pck
Phosphoenolpyruvate carboxykinase [GTP] (EC 4.1.1.32)
Position: -185
Score: 3.5
Sequence: AGTCATAAATGTCACA
Position: 4
Score: 4.2
Sequence: TGTGGCACAGGTCTCA
Locus tag: DIP2055
Name: pta
Funciton: Phosphate acetyltransferase (EC 2.3.1.8)
Locus tag: DIP2054
Name: ackA
Funciton: Acetate kinase (EC 2.7.2.1)
DIP2055
pta
Phosphate acetyltransferase (EC 2.3.1.8)
DIP2054
ackA
Acetate kinase (EC 2.7.2.1)
Position: -251
Score: 4.2
Sequence: TGTGACATCTATCACG
Locus tag: DIP1629
Name: ctaC
Funciton: Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: DIP1628
Name: ctaF
Funciton: Cytochrome c oxidase polypeptide IV (EC 1.9.3.1)
DIP1629
ctaC
Cytochrome c oxidase polypeptide II (EC 1.9.3.1)
DIP1628
ctaF
Cytochrome c oxidase polypeptide IV (EC 1.9.3.1)
Position: -191
Score: 4.2
Sequence: CGTGATAGATGTCACA
Locus tag: DIP1630
Name: ltsA
Funciton: Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
DIP1630
ltsA
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
Position: -8
Score: 3.8
Sequence: TGTGATCTATGGCAAA
Locus tag: DIP1979
Name: cynT
Funciton: Carbonic anhydrase (EC 4.2.1.1)
Locus tag: DIP1978
Name: cg2952
Funciton: Conserved hypothetical protein
DIP1979
cynT
Carbonic anhydrase (EC 4.2.1.1)
DIP1978
cg2952
Conserved hypothetical protein
Position: -121
Score: 3.9
Sequence: TGAGTAGTAGCTCACT
Locus tag: DIP0538
Name: cg2707
Funciton: Predicted ATPase
DIP0538
cg2707
Predicted ATPase
Position: -89
Score: 3.6
Sequence: GGAGGTATAAGTCTCA
Locus tag: DIP0253
Name: gntP
Funciton: Gluconate permease
DIP0253
gntP
Gluconate permease
Position: -185
Score: 3.7
Sequence: TGAGATATAGACCTCT
Locus tag: DIP0539
Name: msiK1
Funciton: Maltose/maltodextrin ABC transporter, ATP-binding protein
DIP0539
msiK1
Maltose/maltodextrin ABC transporter, ATP-binding protein
Position: -76
Score: 4.5
Sequence: TGTGCCGAAAGTCACA
Locus tag: DIP1865
Name: nrdF
Funciton: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
DIP1865
nrdF
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
Position: -82
Score: 4.6
Sequence: GGTGACCTAATTCACA
Locus tag: DIP0370
Name: sdhC
Funciton: Succinate dehydrogenase, cytochrome b subunit (EC 1.3.99.1)
Locus tag: DIP0371
Name: sdhA
Funciton: Succinate dehydrogenase, flavoprotein subunit (EC 1.3.99.1)
Locus tag: DIP0372
Name: sdhB
Funciton: Succinate dehydrogenase, iron-sulfur cluster subunit (EC 1.3.99.1)
Locus tag: DIP0373
Name: cg0448
Funciton: Conserved hypothetical protein
DIP0370
sdhC
Succinate dehydrogenase, cytochrome b subunit (EC 1.3.99.1)
DIP0371
sdhA
Succinate dehydrogenase, flavoprotein subunit (EC 1.3.99.1)
DIP0372
sdhB
Succinate dehydrogenase, iron-sulfur cluster subunit (EC 1.3.99.1)
DIP0373
cg0448
Conserved hypothetical protein
Position: -1
Score: 3.5
Sequence: TATGACGCATACAACA
Locus tag: DIP0833
Name: gabD2
Funciton: Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
DIP0833
gabD2
Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
Position: -252
Score: 4.5
Sequence: TGTGACTTTCGGCACA
Position: -173
Score: 3.7
Sequence: CGTGGCATATCTCACC
Locus tag: DIP1866
Name: ftn
Funciton: Ferritin
DIP1866
ftn
Ferritin
Position: -257
Score: 3.8
Sequence: GGTGGGCTGGGTCACC
Position: -1
Score: 3.4
Sequence: TATGGCTGACCACACA
Locus tag: DIP0064
Name: copR
Funciton: Copper homeostasis transcriptional regulator CopR, OmpR family
Locus tag: DIP0063
Name: copS
Funciton: Copper homeostasis regulatory system, sensor kinase
Locus tag: DIP0062
Name: copZ
Funciton: Copper insertion chaperone and transporter component
Locus tag: DIP0061
Name: copB
Funciton: Copper-translocating P-type ATPase (EC 3.6.3.4)
DIP0064
copR
Copper homeostasis transcriptional regulator CopR, OmpR family
DIP0063
copS
Copper homeostasis regulatory system, sensor kinase
DIP0062
copZ
Copper insertion chaperone and transporter component
DIP0061
copB
Copper-translocating P-type ATPase (EC 3.6.3.4)
Position: -51
Score: 3.8
Sequence: GGTGTCGGAAACCACA
Position: -23
Score: 4.2
Sequence: GGTGATGTGGAACACT
Locus tag: DIP0885
Name: echA3
Funciton: 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
DIP0885
echA3
3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4)
Position: -102
Score: 3.8
Sequence: GGTGACCCAGCCCACC
Locus tag: DIP0066
Name: cg3286
Funciton: conserved hypothetical protein
Locus tag: DIP0067
Name: copO
Funciton: Multicopper oxidase, secreted
DIP0066
cg3286
conserved hypothetical protein
DIP0067
copO
Multicopper oxidase, secreted
Position: -223
Score: 4.3
Sequence: TGTGATATGGGGCACT
Locus tag: DIP1282
Name: DIP1282
Funciton: Putative ORF
Locus tag: DIP1283
Name: acn
Funciton: Aconitate hydratase (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
Locus tag: DIP1284
Name: acnR
Funciton: Aconitase gene transcriptional regulator AcnR, TetR family
DIP1282
DIP1282
Putative ORF
DIP1283
acn
Aconitate hydratase (EC 4.2.1.3) / 2-methylisocitrate dehydratase (EC 4.2.1.99)
DIP1284
acnR
Aconitase gene transcriptional regulator AcnR, TetR family
Position: -307
Score: 4.3
Sequence: AGTGCCCCATATCACA
Locus tag: DIP1281
Name: cg1735
Funciton: Secreted cell wall-associated hydrolase (invasion-associated protein)
DIP1281
cg1735
Secreted cell wall-associated hydrolase (invasion-associated protein)
Position: -310
Score: 4.2
Sequence: TGTGACGGAGGTAACA
Locus tag: DIP1046
Name: atpB
Funciton: ATP synthase A chain (EC 3.6.3.14)
Locus tag: DIP1047
Name: atpE
Funciton: ATP synthase C chain (EC 3.6.3.14)
Locus tag: DIP1048
Name: atpF
Funciton: ATP synthase B chain (EC 3.6.3.14)
Locus tag: DIP1049
Name: atpH
Funciton: ATP synthase delta chain (EC 3.6.3.14)
Locus tag: DIP1050
Name: atpA
Funciton: ATP synthase alpha chain (EC 3.6.3.14)
Locus tag: DIP1051
Name: atpG
Funciton: ATP synthase gamma chain (EC 3.6.3.14)
Locus tag: DIP1052
Name: atpD
Funciton: ATP synthase beta chain (EC 3.6.3.14)
Locus tag: DIP1053
Name: atpC
Funciton: ATP synthase epsilon chain (EC 3.6.3.14)
DIP1046
atpB
ATP synthase A chain (EC 3.6.3.14)
DIP1047
atpE
ATP synthase C chain (EC 3.6.3.14)
DIP1048
atpF
ATP synthase B chain (EC 3.6.3.14)
DIP1049
atpH
ATP synthase delta chain (EC 3.6.3.14)
DIP1050
atpA
ATP synthase alpha chain (EC 3.6.3.14)
DIP1051
atpG
ATP synthase gamma chain (EC 3.6.3.14)
DIP1052
atpD
ATP synthase beta chain (EC 3.6.3.14)
DIP1053
atpC
ATP synthase epsilon chain (EC 3.6.3.14)
Position: -64
Score: 3.7
Sequence: GGTGATCTGCGCTACA
Locus tag: DIP1122
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
DIP1122
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -105
Score: 3.6
Sequence: TGTTAGTGTATTCACA
Locus tag: DIP0298
Name: pbp1B
Funciton: Multimodular transpeptidase-transglycosylase (EC 2.4.1.129)
DIP0298
pbp1B
Multimodular transpeptidase-transglycosylase (EC 2.4.1.129)
Position: -342
Score: 3.7
Sequence: CGTGACCTGCACCATA
Locus tag: DIP1098
Name: ilvB
Funciton: Acetolactate synthase, large subunit (EC 2.2.1.6)
Locus tag: DIP1099
Name: ilvN
Funciton: Acetolactate synthase, small subunit (EC 2.2.1.6)
Locus tag: DIP1100
Name: ilvC
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
DIP1098
ilvB
Acetolactate synthase, large subunit (EC 2.2.1.6)
DIP1099
ilvN
Acetolactate synthase, small subunit (EC 2.2.1.6)
DIP1100
ilvC
Ketol-acid reductoisomerase (EC 1.1.1.86)
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