Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RhaR in Arthrobacter sp. FB24

Properties
Regulator type: Transcription factor
TF locus tag: Arth_3308
Regulator family: LacI
Regulation mode: repressor
Biological process: Rhamnose utilization
Effector: Rhamnose
Regulog: RhaR - Micrococcineae
Statistics of regulated genes:
- Genes 18
- Operons 7
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 29 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -203
Score: 5.8
Sequence: TCTTTGAATCGTTTCATTGT
Position: -190
Score: 5.5
Sequence: TCATTGTTACGATTCAAAGT
Locus tag: Arth_3308
Name: rhaR
Funciton: Transcriptional regulator of rhamnose utilization, LacI family
Arth_3308
rhaR
Transcriptional regulator of rhamnose utilization, LacI family
Position: -57
Score: 5.5
Sequence: ACTTTGAATCGTAACAATGA
Position: -44
Score: 5.8
Sequence: ACAATGAAACGATTCAAAGA
Locus tag: Arth_3307
Name: rhaM
Funciton: L-rhamnose mutarotase
Locus tag: Arth_3306
Name: rhaI
Funciton: Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
Locus tag: Arth_3305
Name: rhaEW
Funciton: Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
Locus tag: Arth_3304
Name: rhaB
Funciton: Rhamnulokinase (EC 2.7.1.5)
Arth_3307
rhaM
L-rhamnose mutarotase
Arth_3306
rhaI
Predicted L-rhamnose isomerase RhaI (EC 5.3.1.14)
Arth_3305
rhaEW
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Predicted lactaldehyde dehydrogenase (EC 1.2.1.22)
Arth_3304
rhaB
Rhamnulokinase (EC 2.7.1.5)
Position: -155
Score: 5.1
Sequence: TGAATGAAACGTATCAATAT
Locus tag: Arth_3316
Name: ytcQ
Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
Locus tag: Arth_3315
Name: yteP
Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
Locus tag: Arth_3314
Name: ytcP
Funciton: Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
Locus tag: Arth_3313
Name: yesT
Funciton: Rhamnogalacturonan acetylesterase
Locus tag: Arth_3312
Name: yesU
Funciton: hypothetical protein
Arth_3316
ytcQ
Predicted unsaturated rhamnogalacturonyl ABC transporter, substrate-binding component
Arth_3315
yteP
Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 1
Arth_3314
ytcP
Predicted unsaturated rhamnogalacturonyl ABC transporter, permease component 2
Arth_3313
yesT
Rhamnogalacturonan acetylesterase
Arth_3312
yesU
hypothetical protein
Position: -135
Score: 5.4
Sequence: ATTATGTAACGATTCAAAAT
Locus tag: Arth_3317
Name: yteU
Funciton: Putative membrane enzyme for rhamnogalaturonan degradation
Arth_3317
yteU
Putative membrane enzyme for rhamnogalaturonan degradation
Position: -100
Score: 5.1
Sequence: ATATTGTATCGTTTCAGAAA
Locus tag: Arth_3324
Name: rhiN
Funciton: Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Locus tag: Arth_3323
Name: rhiF
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 1
Locus tag: Arth_3322
Name: rhiG
Funciton: Putatuve rhamnogalacturonides ABC transporter, permease component 2
Locus tag: Arth_3321
Name: AAur_3306
Funciton: hypothetical protein
Locus tag: Arth_3320
Name: AAur_3305
Funciton: putative transmembrane efflux protein (MFS)
Arth_3324
rhiN
Putatuve rhamnogalacturonides ABC transporter, substrate-binding protein
Arth_3323
rhiF
Putatuve rhamnogalacturonides ABC transporter, permease component 1
Arth_3322
rhiG
Putatuve rhamnogalacturonides ABC transporter, permease component 2
Arth_3321
AAur_3306
hypothetical protein
Arth_3320
AAur_3305
putative transmembrane efflux protein (MFS)
Position: -193
Score: 5.4
Sequence: ATTTTGAATCGTTACATAAT
Locus tag: Arth_3318
Name: AAur_3304
Funciton: oxidoreductase domain protein
Arth_3318
AAur_3304
oxidoreductase domain protein
Position: -116
Score: 5.4
Sequence: GCTTTGAATCGTTACATTGC
Locus tag: Arth_1969
Name: ramA1
Funciton: alpha-L-rhamnosidase
Arth_1969
ramA1
alpha-L-rhamnosidase
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