Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Shewanella woodyi ATCC 51908

Properties
Regulator type: Transcription factor
TF locus tag: Swoo_0180
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Shewanellaceae
Statistics of regulated genes:
- Genes 15
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 192 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -68
Score: 5
Sequence: ATATGTATATAAATACAGTG
Locus tag: Swoo_4592
Name: recG
Funciton: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
recG
ATP-dependent DNA helicase RecG (EC 3.6.1.-)

Position: -45
Score: 5.3
Sequence: TACTGTATATACTGACAGTT
Position: -26
Score: 5
Sequence: TACTGTATAGAAAGACAGGA
Locus tag: Swoo_0180
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
Locus tag: Swoo_0179
Name: sulA
Funciton: Cell division inhibitor sulA
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)
sulA
Cell division inhibitor sulA

Position: -38
Score: 5.3
Sequence: TACTGTATAAAAACACAGTT
Locus tag: Swoo_2465
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: Swoo_2466
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
umuD
DNA polymerase V, subunit UmuD
umuC
DNA polymerase V, subunit UmuC

Position: -124
Score: 5.5
Sequence: TACTGTATGACTATACAGTA
Locus tag: Swoo_3340
Name: recA
Funciton: Recombinase A
recA
Recombinase A

Position: -35
Score: 5.4
Sequence: TACTGGTAATTTATACAGTG
Locus tag: Swoo_2976
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB
DNA topoisomerase III (EC 5.99.1.2)

Position: -64
Score: 5.9
Sequence: TACTGTATTTATGAACAGTA
Position: -42
Score: 5.9
Sequence: TACTGTTCATAAATACAGTA
Locus tag: Swoo_3359
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -37
Score: 5.1
Sequence: CACTGTTATTATGTACAGCT
Locus tag: Swoo_3086
Name: dinG
Funciton: ATP-dependent helicase DinG/Rad3
Locus tag: Swoo_3087
Name: SO1818
Funciton: protein of unknown function DUF81
Locus tag: Swoo_3088
Name: SO1817
Funciton: Primosomal replication protein N prime-like protein
dinG
ATP-dependent helicase DinG/Rad3
SO1818
protein of unknown function DUF81
SO1817
Primosomal replication protein N prime-like protein

Position: -31
Score: 5.9
Sequence: AACTGTATATAAAAACAGTA
Locus tag: Swoo_2130
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
Locus tag: Swoo_2131
Name: yebR
Funciton: COG1956, GAF domain-containing protein
yebG
SOS regulon DNA damage-inducible protein
yebR
COG1956, GAF domain-containing protein

Position: -52
Score: 6
Sequence: CACTGTTTTTATATACAGTA
Locus tag: Swoo_3604
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -48
Score: 5.8
Sequence: CACTGTTTTTTTATACAGTA
Locus tag: Swoo_4307
Name: xerD
Funciton: Site-specific recombinase XerD
xerD
Site-specific recombinase XerD
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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