Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of RpoN in Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Properties
Regulator type: Transcription factor
TF locus tag: Ddes_0974
Regulator family: Sigma54
Regulation mode:
Biological process: Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Effector:
Regulog: RpoN - Desulfovibrionales
Statistics of regulated genes:
- Genes 106
- Operons 45
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 487 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: 47
Score: 4
Sequence: TATGGCAAAGCTCCTGTTG
Locus tag: Ddes_0811
Name: null
Funciton: protein of unknown function DUF81
Locus tag: Ddes_0812
Name: null
Funciton: hypothetical membrane protein
Locus tag: Ddes_0813
Name: null
Funciton: integral membrane sensor signal transduction histidine kinase
Locus tag: Ddes_0814
Name: null
Funciton: response regulator receiver protein
Locus tag: Ddes_0815
Name: null
Funciton: hypothetical protein
Locus tag: Ddes_0816
Name: null
Funciton: Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Locus tag: Ddes_0817
Name: null
Funciton: response regulator receiver sensor signal transduction histidine kinase
Ddes_0811
protein of unknown function DUF81
Ddes_0812
hypothetical membrane protein
Ddes_0813
integral membrane sensor signal transduction histidine kinase
Ddes_0814
response regulator receiver protein
Ddes_0815
hypothetical protein
Ddes_0816
Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Ddes_0817
response regulator receiver sensor signal transduction histidine kinase
Position: -228
Score: 5.1
Sequence: TCTGGCACGCATCCTGCAA
Locus tag: Ddes_1437
Name: null
Funciton: amidohydrolase family protein
Ddes_1437
amidohydrolase family protein
Position: -190
Score: 4.6
Sequence: TCTGGAACACTTCTTGTAT
Locus tag: Ddes_0220
Name: null
Funciton: Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15)
Locus tag: Ddes_0221
Name: null
Funciton: cationic amino acid transporter
Ddes_0220
Sulfoacetaldehyde acetyltransferase (EC 2.3.3.15)
Ddes_0221
cationic amino acid transporter
Position: -123
Score: 4.7
Sequence: TGTGGCATGCCCCATGCAA
Locus tag: Ddes_1436
Name: null
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
Locus tag: Ddes_1435
Name: null
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Locus tag: Ddes_1434
Name: null
Funciton: PAS modulated sigma54 specific transcriptional regulator, Fis family
Locus tag: Ddes_1433
Name: null
Funciton: hypothetical protein
Ddes_1436
Pyruvate formate-lyase (EC 2.3.1.54)
Ddes_1435
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Ddes_1434
PAS modulated sigma54 specific transcriptional regulator, Fis family
Ddes_1433
hypothetical protein
Position: -198
Score: 5.3
Sequence: TTTGGCACGCACATTGCTC
Locus tag: Ddes_2374
Name: null
Funciton: Hydrolase, UxaA family
Locus tag: Ddes_2375
Name: null
Funciton: Altronate dehydratase
Ddes_2374
Hydrolase, UxaA family
Ddes_2375
Altronate dehydratase
Position: -75
Score: 4.9
Sequence: AATGGCATACAGTTTGCTT
Locus tag: Ddes_0313
Name: null
Funciton: hypothetical protein
Locus tag: Ddes_0314
Name: null
Funciton: hypothetical protein
Ddes_0313
hypothetical protein
Ddes_0314
hypothetical protein
Position: -61
Score: 4.8
Sequence: CTTGGCACTGTACTTGCTG
Locus tag: Ddes_0311
Name: null
Funciton: hypothetical protein
Ddes_0311
hypothetical protein
Position: -76
Score: 5.3
Sequence: TCTGGCACGCTCTCTGCAT
Locus tag: Ddes_2091
Name: flgE
Funciton: Flagellar hook protein FlgE
Ddes_2091
flgE
Flagellar hook protein FlgE
Position: -120
Score: 5.3
Sequence: TCTGGCATCCATCTTGCTT
Locus tag: Ddes_1230
Name: null
Funciton: hypothetical protein
Ddes_1230
hypothetical protein
Position: -27
Score: 3.4
Sequence: ATTTGCAAAAATCATGCAA
Locus tag: Ddes_0186
Name: zraS
Funciton: Sensor protein of sigma-54-dependent two-component system
Locus tag: Ddes_0187
Name: zraR
Funciton: Two component, sigma54 specific, transcriptional regulator, Fis family
Ddes_0186
zraS
Sensor protein of sigma-54-dependent two-component system
Ddes_0187
zraR
Two component, sigma54 specific, transcriptional regulator, Fis family
Position: -96
Score: 4.5
Sequence: CTTGGCCCCTAATTTGCAT
Locus tag: Ddes_0327
Name: flhF
Funciton: Flagellar biosynthesis protein FlhF
Locus tag: Ddes_0326
Name: fleN
Funciton: Flagellar synthesis regulator FleN
Locus tag: Ddes_0325
Name: fliA
Funciton: RNA polymerase, sigma 28 subunit, FliA/WhiG
Locus tag: Ddes_0324
Name: cheY
Funciton: Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
Locus tag: Ddes_0323
Name: fliL
Funciton: Flagellar biosynthesis protein FliL
Locus tag: Ddes_0322
Name: null
Funciton: hypothetical protein
Locus tag: Ddes_0321
Name: null
Funciton: hypothetical protein
Ddes_0327
flhF
Flagellar biosynthesis protein FlhF
Ddes_0326
fleN
Flagellar synthesis regulator FleN
Ddes_0325
fliA
RNA polymerase, sigma 28 subunit, FliA/WhiG
Ddes_0324
cheY
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
Ddes_0323
fliL
Flagellar biosynthesis protein FliL
Ddes_0322
hypothetical protein
Ddes_0321
hypothetical protein
Position: -175
Score: 4.9
Sequence: TCTGGCACGGGCTTTGTAT
Locus tag: Ddes_0331
Name: flhA
Funciton: Flagellar biosynthesis pathway, component FlhA
Ddes_0331
flhA
Flagellar biosynthesis pathway, component FlhA
Position: -43
Score: 4.6
Sequence: TTTGGAACACTCTTTGTAT
Locus tag: Ddes_1259
Name: fliK
Funciton: Flagellar hook-length control protein FliK
Ddes_1259
fliK
Flagellar hook-length control protein FliK
Position: -98
Score: 4.4
Sequence: GTTGGAACAGCCTGTGCAT
Locus tag: Ddes_1260
Name: flgD
Funciton: Flagellar basal-body rod modification protein FlgD
Locus tag: Ddes_1261
Name: flgE
Funciton: Flagellar hook protein FlgE
Ddes_1260
flgD
Flagellar basal-body rod modification protein FlgD
Ddes_1261
flgE
Flagellar hook protein FlgE
Position: -84
Score: 4.4
Sequence: CGAGGCACGGAAATTGCTT
Locus tag: Ddes_2002
Name: DVU0518
Funciton: FlgN family protein
Locus tag: Ddes_2001
Name: flgK
Funciton: flagellar hook-associated protein FlgK
Locus tag: Ddes_2000
Name: flgL
Funciton: Flagellar hook-associated protein FlgL
Locus tag: Ddes_1999
Name: csrA
Funciton: carbon storage regulator, CsrA
Locus tag: Ddes_1998
Name: fliW
Funciton: Flagellar assembly factor FliW
Ddes_2002
DVU0518
FlgN family protein
Ddes_2001
flgK
flagellar hook-associated protein FlgK
Ddes_2000
flgL
Flagellar hook-associated protein FlgL
Ddes_1999
csrA
carbon storage regulator, CsrA
Ddes_1998
fliW
Flagellar assembly factor FliW
Position: -76
Score: 4.1
Sequence: TGCGGCCCGGCGCGTGCTG
Locus tag: Ddes_0750
Name: nudF
Funciton: ADP-ribose pyrophosphatase (EC 3.6.1.13)
Locus tag: Ddes_0751
Name: null
Funciton: 3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Locus tag: Ddes_0752
Name: nadE
Funciton: NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase
Ddes_0750
nudF
ADP-ribose pyrophosphatase (EC 3.6.1.13)
Ddes_0751
3-polyprenyl-4-hydroxybenzoate carboxy-lyase (EC 4.1.1.-)
Ddes_0752
nadE
NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase
Position: -134
Score: 4.3
Sequence: AGTTGCATGATTTTTGCAA
Locus tag: Ddes_0185
Name: zraP
Funciton: Zinc resistance-associated protein
Ddes_0185
zraP
Zinc resistance-associated protein
Position: -126
Score: 4.7
Sequence: CTTGGCACAGATAGTGCTT
Locus tag: Ddes_1147
Name: amt
Funciton: Ammonium transporter
Locus tag: Ddes_1148
Name: glnB
Funciton: Nitrogen regulatory protein P-II
Locus tag: Ddes_1149
Name: null
Funciton: Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Ddes_1147
amt
Ammonium transporter
Ddes_1148
glnB
Nitrogen regulatory protein P-II
Ddes_1149
Glutamine synthetase type III, GlnN (EC 6.3.1.2)
Position: -58
Score: 4.6
Sequence: TTTGGCACATGGATTGCAA
Locus tag: Ddes_1028
Name: fliC
Funciton: flagellin domain protein
Ddes_1028
fliC
flagellin domain protein
Position: -110
Score: 5.1
Sequence: ATTGGCACGACCTTTGCCT
Locus tag: Ddes_0767
Name: null
Funciton: hypothetical protein
Ddes_0767
hypothetical protein
Position: -173
Score: 4.1
Sequence: AATGGCAGCAAATTTGCAT
Locus tag: Ddes_2079
Name: mltC
Funciton: Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)
Ddes_2079
mltC
Membrane-bound lytic murein transglycosylase C precursor (EC 3.2.1.-)
Position: -115
Score: 4.9
Sequence: AATGGCATGGCGATTGCTA
Locus tag: Ddes_1642
Name: null
Funciton: hypothetical membrane protein
Locus tag: Ddes_1641
Name: null
Funciton: hypothetical membrane protein
Locus tag: Ddes_1640
Name: null
Funciton: lipoprotein, putative
Locus tag: Ddes_1639
Name: null
Funciton: lipoprotein, putative
Locus tag: Ddes_1638
Name: null
Funciton: hypothetical protein
Ddes_1642
hypothetical membrane protein
Ddes_1641
hypothetical membrane protein
Ddes_1640
lipoprotein, putative
Ddes_1639
lipoprotein, putative
Ddes_1638
hypothetical protein
Position: -191
Score: 4.2
Sequence: ACTGGTACGTTTCTTGAAA
Locus tag: Ddes_0082
Name: nrfH
Funciton: Cytochrome c nitrite reductase, small subunit NrfH
Locus tag: Ddes_0081
Name: nrfA
Funciton: Cytochrome c nitrite reductase, catalytic subunit NrfA
Ddes_0082
nrfH
Cytochrome c nitrite reductase, small subunit NrfH
Ddes_0081
nrfA
Cytochrome c nitrite reductase, catalytic subunit NrfA
Position: -66
Score: 4.4
Sequence: TATGGACCATATTTTGCAT
Locus tag: Ddes_1559
Name: null
Funciton: hypothetical protein
Ddes_1559
hypothetical protein
Position: -81
Score: 4.6
Sequence: GTTGGCATACTTATTGATT
Locus tag: Ddes_2343
Name: null
Funciton: type I phosphodiesterase/nucleotide pyrophosphatase
Locus tag: Ddes_2344
Name: null
Funciton: hypothetical protein
Ddes_2343
type I phosphodiesterase/nucleotide pyrophosphatase
Ddes_2344
hypothetical protein
Position: -244
Score: 4.8
Sequence: TTTGGAACAATGTTTGCTA
Locus tag: Ddes_0154
Name: null
Funciton: sodium-solute symporter, putative
Locus tag: Ddes_0153
Name: null
Funciton: OsmC/Ohr family protein
Locus tag: Ddes_0152
Name: null
Funciton: Glycine cleavage system H protein
Locus tag: Ddes_0151
Name: null
Funciton: dihydrolipoamide dehydrogenase( EC:1.8.1.4 )
Ddes_0154
sodium-solute symporter, putative
Ddes_0153
OsmC/Ohr family protein
Ddes_0152
Glycine cleavage system H protein
Ddes_0151
dihydrolipoamide dehydrogenase( EC:1.8.1.4 )
Position: -63
Score: 4.7
Sequence: TTTGGCACGACTACTGCAG
Locus tag: Ddes_2342
Name: null
Funciton: choline/carnitine/betaine transporter
Ddes_2342
choline/carnitine/betaine transporter
Position: -62
Score: 4.3
Sequence: TCTGGCATCATTAGTGCAA
Locus tag: Ddes_2346
Name: null
Funciton: OsmC family protein
Locus tag: Ddes_2347
Name: null
Funciton: dihydrolipoamide dehydrogenase( EC:1.8.1.4 )
Locus tag: Ddes_2348
Name: null
Funciton: Glycine cleavage system H protein
Locus tag: Ddes_2349
Name: null
Funciton: protein of unknown function DUF6 transmembrane
Locus tag: Ddes_2350
Name: null
Funciton: hypothetical protein
Ddes_2346
OsmC family protein
Ddes_2347
dihydrolipoamide dehydrogenase( EC:1.8.1.4 )
Ddes_2348
Glycine cleavage system H protein
Ddes_2349
protein of unknown function DUF6 transmembrane
Ddes_2350
hypothetical protein
Position: -151
Score: 4.7
Sequence: GTTGGCCTGCCTATTGCAC
Locus tag: Ddes_2345
Name: null
Funciton: sigma54 specific transcriptional regulator, Fis family
Ddes_2345
sigma54 specific transcriptional regulator, Fis family
Position: -76
Score: 4.9
Sequence: TTTGGCAAGACCTTTGCAT
Locus tag: Ddes_0695
Name: null
Funciton: hypothetical protein
Ddes_0695
hypothetical protein
Position: -118
Score: 3.8
Sequence: GCAGGGACGCTTTTTGTAT
Locus tag: Ddes_1867
Name: DVU2108
Funciton: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
Locus tag: Ddes_1866
Name: null
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain protein
Locus tag: Ddes_1865
Name: null
Funciton: Iron-sulfur cluster binding protein
Locus tag: Ddes_1864
Name: null
Funciton: Dinitrogenase iron-molybdenum cofactor biosynthesis protein
Ddes_1867
DVU2108
Dinitrogenase iron-molybdenum cofactor biosynthesis protein
Ddes_1866
4Fe-4S ferredoxin iron-sulfur binding domain protein
Ddes_1865
Iron-sulfur cluster binding protein
Ddes_1864
Dinitrogenase iron-molybdenum cofactor biosynthesis protein
Position: -57
Score: 4.9
Sequence: TTCGGCACGCTTTCTGCAA
Locus tag: Ddes_2004
Name: flgI
Funciton: Flagellar P-ring protein FlgI
Locus tag: Ddes_2003
Name: flgJ
Funciton: Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
Ddes_2004
flgI
Flagellar P-ring protein FlgI
Ddes_2003
flgJ
Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
Position: -141
Score: 4.7
Sequence: TCTGGCACAGTGTCTGCAA
Locus tag: Ddes_0373
Name: fliL
Funciton: Flagellar basal body-associated protein FliL
Locus tag: Ddes_0374
Name: null
Funciton: hypothetical protein
Locus tag: Ddes_0375
Name: fliN
Funciton: Flagellar motor switch protein FliN
Locus tag: Ddes_0376
Name: fliO
Funciton: Flagellar biosynthesis protein FliO
Locus tag: Ddes_0377
Name: fliP
Funciton: Flagellar biosynthesis protein FliP
Ddes_0373
fliL
Flagellar basal body-associated protein FliL
Ddes_0374
hypothetical protein
Ddes_0375
fliN
Flagellar motor switch protein FliN
Ddes_0376
fliO
Flagellar biosynthesis protein FliO
Ddes_0377
fliP
Flagellar biosynthesis protein FliP
Position: -71
Score: 4.4
Sequence: TCTGGCATCAATCTTGAAT
Locus tag: Ddes_0378
Name: fliQ
Funciton: Flagellar biosynthesis protein FliQ
Ddes_0378
fliQ
Flagellar biosynthesis protein FliQ
Position: -79
Score: 4.5
Sequence: CCGGGTACGCTTCTTGCTA
Locus tag: Ddes_0332
Name: flhB
Funciton: Flagellar biosynthesis protein FlhB
Locus tag: Ddes_0331
Name: flhA
Funciton: Flagellar biosynthesis protein FlhA
Ddes_0332
flhB
Flagellar biosynthesis protein FlhB
Ddes_0331
flhA
Flagellar biosynthesis protein FlhA
Position: -29
Score: 4.7
Sequence: TTTGGCAACCATTTTGCAA
Locus tag: Ddes_0193
Name: fliR
Funciton: Flagellar biosynthesis protein FliR
Ddes_0193
fliR
Flagellar biosynthesis protein FliR
Position: -101
Score: 5.3
Sequence: TTTGGCCCGCACTTTGCAT
Locus tag: Ddes_0391
Name: flgF
Funciton: Flagellar basal-body rod protein FlgF
Locus tag: Ddes_0392
Name: flgG
Funciton: Flagellar basal-body rod protein FlgG
Locus tag: Ddes_0393
Name: flgA
Funciton: Flagellar basal-body P-ring formation protein FlgA
Locus tag: Ddes_0394
Name: flgH
Funciton: Flagellar L-ring protein FlgH
Ddes_0391
flgF
Flagellar basal-body rod protein FlgF
Ddes_0392
flgG
Flagellar basal-body rod protein FlgG
Ddes_0393
flgA
Flagellar basal-body P-ring formation protein FlgA
Ddes_0394
flgH
Flagellar L-ring protein FlgH
Position: -78
Score: 4.4
Sequence: AATGGCCTTTTTCTTGCAT
Locus tag: Ddes_1836
Name: fliM
Funciton: Flagellar motor switch protein FliM
Ddes_1836
fliM
Flagellar motor switch protein FliM
Position: -119
Score: 3.9
Sequence: CGTGGCATGGTGGCTGCGC
Position: -63
Score: 5
Sequence: CTTGGCCCGCTGTTTGCAC
Locus tag: Ddes_0698
Name: fliJ
Funciton: Flagellar biosynthesis chaperone FliJ
Locus tag: Ddes_0697
Name: flbB
Funciton: Flagellar protein FlbB
Locus tag: Ddes_0696
Name: truA
Funciton: tRNA pseudouridine synthase A (EC 4.2.1.70)
Ddes_0698
fliJ
Flagellar biosynthesis chaperone FliJ
Ddes_0697
flbB
Flagellar protein FlbB
Ddes_0696
truA
tRNA pseudouridine synthase A (EC 4.2.1.70)
Position: -79
Score: 4.5
Sequence: TTAGGCATGAATGTTGCTA
Locus tag: Ddes_1573
Name: fliF
Funciton: Flagellar M-ring protein FliF
Locus tag: Ddes_1571
Name: fliG
Funciton: Flagellar motor switch protein FliG
Locus tag: Ddes_1570
Name: fliH
Funciton: Flagellar assembly protein FliH
Locus tag: Ddes_1569
Name: fliI
Funciton: flagellar protein export ATPase FliI
Ddes_1573
fliF
Flagellar M-ring protein FliF
Ddes_1571
fliG
Flagellar motor switch protein FliG
Ddes_1570
fliH
Flagellar assembly protein FliH
Ddes_1569
fliI
flagellar protein export ATPase FliI
Position: -59
Score: 4.8
Sequence: TTTGGAACAAATGTTGCTT
Locus tag: Ddes_1576
Name: flgB
Funciton: Flagellar basal-body rod protein FlgB
Locus tag: Ddes_1575
Name: flgC
Funciton: Flagellar basal-body rod protein FlgC
Locus tag: Ddes_1574
Name: fliE
Funciton: Flagellar hook-basal body complex protein FliE
Ddes_1576
flgB
Flagellar basal-body rod protein FlgB
Ddes_1575
flgC
Flagellar basal-body rod protein FlgC
Ddes_1574
fliE
Flagellar hook-basal body complex protein FliE
Position: -59
Score: 4.6
Sequence: CTTGGCAGCATTTTTGCAT
Locus tag: Ddes_0763
Name: null
Funciton: hypothetical protein
Ddes_0763
hypothetical protein
Position: -82
Score: 4.5
Sequence: AGTTGCACGCATTTTGCAA
Locus tag: Ddes_0530
Name: fliD
Funciton: Flagellar hook-associated protein FliD
Locus tag: Ddes_0529
Name: fliS
Funciton: Flagellin-specific chaperone FliS
Ddes_0530
fliD
Flagellar hook-associated protein FliD
Ddes_0529
fliS
Flagellin-specific chaperone FliS
Position: -177
Score: 4.9
Sequence: TTTGGCACGTTTCTGGCAT
Position: -148
Score: 4.3
Sequence: AATGGCACACACTGTGCCG
Position: -54
Score: 4
Sequence: GTTGGCAAGGTGAATGCCA
Locus tag: Ddes_0596
Name: null
Funciton: lipoprotein, putative
Ddes_0596
lipoprotein, putative
Position: -243
Score: 4.8
Sequence: AATGGCATGATTCCTGCTG
Locus tag: Ddes_2282
Name: flaB3
Funciton: Flagellin protein FlaA
Ddes_2282
flaB3
Flagellin protein FlaA
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