Regulon of RhaR in Oceanicola granulosus HTCC2516

Properties
Regulator type:	Transcription factor
TF locus tag:
Regulator family:	DeoR
Regulation mode:	repressor
Biological process:	Rhamnose utilization
Effector:	Rhamnose
Regulog:	RhaR - Rhodobacterales
Statistics of regulated genes:
- Genes	9
- Operons	2
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 11 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - DeoR
By effector - Rhamnose
By pathway - Rhamnose utilization

Regulated operons
	Locus Tag	Name	Function
Position: -150 Score: 6.4 Sequence: TCAATCA-(3)-TCGATCA Position: -140 Score: 6.4 Sequence: TCGATCA-(3)-TCAATCA Locus tag: OG2516_12151 Name: rhaEW Funciton: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22) Locus tag: OG2516_12146 Name: rhaI Funciton: L-rhamnose isomerase (EC 5.3.1.14)
	OG2516_12151	rhaEW	Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / Lactaldehyde dehydrogenase (EC 1.2.1.22)
	OG2516_12146	rhaI	L-rhamnose isomerase (EC 5.3.1.14)
Position: -137 Score: 4.9 Sequence: TCGAGCG-(3)-TCGCTCA Position: -116 Score: 5.5 Sequence: TCAATCA-(3)-TCGCTCA Position: -74 Score: 6.7 Sequence: ATGATTG-(3)-ATGATCG Position: -64 Score: 6.7 Sequence: ATGATCG-(3)-ATGATTG Locus tag: OG2516_12156 Name: rhaR Funciton: Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein Locus tag: OG2516_12161 Name: rhaF Funciton: L-rhamnose ABC transporter, periplasmic rhamnose-binding protein Locus tag: OG2516_12166 Name: rhaG Funciton: L-rhamnose ABC transporter, duplicated ATP-binding component Locus tag: OG2516_12171 Name: rhaH Funciton: L-rhamnose ABC transporter, permease component 1 Locus tag: OG2516_12176 Name: rhaJ Funciton: L-rhamnose ABC transporter, permease component 2 Locus tag: OG2516_12181 Name: rhaM Funciton: L-rhamnose mutarotase Locus tag: OG2516_12186 Name: rhaK Funciton: putative rhamnulokinase
	OG2516_12156	rhaR	Predicted transcriptional regulator for rhamnose utilization, DeoR familyprotein
	OG2516_12161	rhaF	L-rhamnose ABC transporter, periplasmic rhamnose-binding protein
	OG2516_12166	rhaG	L-rhamnose ABC transporter, duplicated ATP-binding component
	OG2516_12171	rhaH	L-rhamnose ABC transporter, permease component 1
	OG2516_12176	rhaJ	L-rhamnose ABC transporter, permease component 2
	OG2516_12181	rhaM	L-rhamnose mutarotase
	OG2516_12186	rhaK	putative rhamnulokinase

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