Regulon of Cobalamin in Silicibacter TM1040

Properties
Regulator type:	RNA regulatory element
Name:	Cobalamin
RFAM:	RF00174
Regulation mode:
Biological process:	Cobalamin biosynthesis
Effector:	Adenosylcobalamin
Regulog:	Cobalamin - Rhodobacterales
Under regulation:
- Genes	19
- Operons	6

Member of regulog collections

By taxonomy - Rhodobacterales
By RNA motif - Cobalamin
By effector - Adenosylcobalamin
By pathway - Cobalamin biosynthesis

Regulated operons
	Locus Tag	Name	Function
Position: -336 Score: 77.8 Sequence: CGCAAGGAAATTTCG... Locus tag: TM1040_2208 Name: cfrX Funciton: Predicted metal-binding protein Locus tag: TM1040_2209 Name: cobW Funciton: CobW GTPase involved in cobalt insertion for B12 biosynthesis Locus tag: TM1040_2210 Name: cobN Funciton: CobN component of cobalt chelatase involved in B12 biosynthesis Locus tag: TM1040_2211 Name: cobG Funciton: Cobalamin biosynthesis protein CobG Locus tag: TM1040_2212 Name: cbiC Funciton: Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Locus tag: TM1040_2213 Name: cbiL Funciton: Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Locus tag: TM1040_2214 Name: cbiH Funciton: Cobalt-precorrin-3b C17-methyltransferase
	TM1040_2208	cfrX	Predicted metal-binding protein
	TM1040_2209	cobW	CobW GTPase involved in cobalt insertion for B12 biosynthesis
	TM1040_2210	cobN	CobN component of cobalt chelatase involved in B12 biosynthesis
	TM1040_2211	cobG	Cobalamin biosynthesis protein CobG
	TM1040_2212	cbiC	Cobalt-precorrin-8x methylmutase (EC 5.4.1.2)
	TM1040_2213	cbiL	Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130)
	TM1040_2214	cbiH	Cobalt-precorrin-3b C17-methyltransferase
Position: -338 Score: 106.6 Sequence: ATACAACTCTGCCCT... Locus tag: TM1040_3219 Name: ardX Funciton: Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit Locus tag: TM1040_3218 Name: frdX Funciton: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
	TM1040_3219	ardX	Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit
	TM1040_3218	frdX	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
Position: -295 Score: 121.7 Sequence: ATCAATATCGTGTTG... Locus tag: TM1040_0521 Name: nrdH Funciton: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib Locus tag: TM1040_0520 Name: nrdI Funciton: Ribonucleotide reduction protein NrdI Locus tag: TM1040_0519 Name: nrdA Funciton: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) Locus tag: TM1040_0518 Name: nrdB Funciton: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
	TM1040_0521	nrdH	Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib
	TM1040_0520	nrdI	Ribonucleotide reduction protein NrdI
	TM1040_0519	nrdA	Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
	TM1040_0518	nrdB	Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
Position: -302 Score: 134.4 Sequence: CGCATGAGAGGGGCG... Locus tag: TM1040_2933 Name: cbiW Funciton: hypothetical protein Locus tag: TM1040_2934 Name: btuF Funciton: ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component Locus tag: TM1040_2935 Name: btuC Funciton: ABC transporter (iron.B12.siderophore.hemin) , permease component Locus tag: TM1040_2936 Name: btuD Funciton: ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
	TM1040_2933	cbiW	hypothetical protein
	TM1040_2934	btuF	ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component
	TM1040_2935	btuC	ABC transporter (iron.B12.siderophore.hemin) , permease component
	TM1040_2936	btuD	ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component
Position: -308 Score: 125.5 Sequence: GCGTAGCATCCAGAC... Locus tag: TM1040_0168 Name: RSP_0787 Funciton: hypothetical protein
	TM1040_0168	RSP_0787	hypothetical protein
Position: -352 Score: 112.8 Sequence: CATTGTCGACGGCAT... Locus tag: TM1040_2222 Name: cbtA Funciton: Predicted cobalt transporter CbtA
	TM1040_2222	cbtA	Predicted cobalt transporter CbtA

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of Cobalamin in Silicibacter TM1040

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --