Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of NarP in Haemophilus ducreyi 35000HP

Properties
Regulator type: Transcription factor
TF locus tag: HD0305
Regulator family: LuxR
Regulation mode: activator (repressor)
Biological process: Nitrate and nitrite respiration
Effector: Nitrite; Nitrate
Regulog: NarP - Pasteurellales
Statistics of regulated genes:
- Genes 28
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 114 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -25
Score: 4.4
Sequence: TAACCATTTATGATTA
Locus tag: HD0264
Name: mdh
Funciton: Malate dehydrogenase (EC 1.1.1.37)
HD0264
mdh
Malate dehydrogenase (EC 1.1.1.37)
Position: -85
Score: 4.5
Sequence: TACCTCTAAAGAAGTA
Locus tag: HD0786
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: HD0787
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: HD0789
Name: ccmC
Funciton: Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: HD0790
Name: ccmD
Funciton: Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
HD0786
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
HD0787
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
HD0789
ccmC
Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
HD0790
ccmD
Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Position: -133
Score: 4.8
Sequence: TACTTCTTTATAGGTA
Position: -43
Score: 4.1
Sequence: TAATTTTTTTGTGTGA
Locus tag: HD0791
Name: ccmE
Funciton: Cytochrome c-type biogenesis protein CcmE, heme chaperone
Locus tag: HD0792
Name: ccmF
Funciton: Cytochrome c heme lyase, subunit CcmF
HD0791
ccmE
Cytochrome c-type biogenesis protein CcmE, heme chaperone
HD0792
ccmF
Cytochrome c heme lyase, subunit CcmF
Position: -96
Score: 4.5
Sequence: TACCTCTCTTGAGGTA
Locus tag: HD0237
Name: dcuB
Funciton: C4-dicarboxylate transporter
HD0237
dcuB
C4-dicarboxylate transporter
Position: -153
Score: 4.2
Sequence: TTCTTATTTAGGGTTA
Locus tag: HD1782
Name: cydA
Funciton: Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: HD1781
Name: cydB
Funciton: Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
HD1782
cydA
Cytochrome d ubiquinol oxidase subunit I (EC 1.10.3.-)
HD1781
cydB
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)
Position: -307
Score: 4.5
Sequence: TACTACTTTTGAGTTA
Locus tag: HD0379
Name: nqrA
Funciton: Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
Locus tag: HD0380
Name: nqrB
Funciton: Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
Locus tag: HD0381
Name: nqrC
Funciton: Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
Locus tag: HD0382
Name: nqrD
Funciton: Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
Locus tag: HD0383
Name: nqrE
Funciton: Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
Locus tag: HD0384
Name: nqrF
Funciton: Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
HD0379
nqrA
Na(+)-translocating NADH-quinone reductase, subunit A (EC 1.6.5.-)
HD0380
nqrB
Na(+)-translocating NADH-quinone reductase, subunit B (EC 1.6.5.-)
HD0381
nqrC
Na(+)-translocating NADH-quinone reductase, subunit C (EC 1.6.5.-)
HD0382
nqrD
Na(+)-translocating NADH-quinone reductase, subunit D (EC 1.6.5.-)
HD0383
nqrE
Na(+)-translocating NADH-quinone reductase, subunit E (EC 1.6.5.-)
HD0384
nqrF
Na(+)-translocating NADH-quinone reductase, subunit F (EC 1.6.5.-)
Position: -80
Score: 4.3
Sequence: TACCTAAATGGAGTGA
Locus tag: HD0072
Name: napF
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapF
Locus tag: HD0073
Name: napD
Funciton: Periplasmic nitrate reductase component NapD
Locus tag: HD0074
Name: napA
Funciton: Periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: HD0076
Name: napG
Funciton: Periplasmic nitrate reductase, ferredoxin-type protein NapG
Locus tag: HD0077
Name: napH
Funciton: Periplasmic nitrate reductase, polyferredoxin NapH
Locus tag: HD0078
Name: napB
Funciton: Nitrate reductase cytochrome c550-type subunit
Locus tag: HD0079
Name: napC
Funciton: Cytochrome c-type protein NapC
HD0072
napF
Periplasmic nitrate reductase, ferredoxin-type protein NapF
HD0073
napD
Periplasmic nitrate reductase component NapD
HD0074
napA
Periplasmic nitrate reductase precursor (EC 1.7.99.4)
HD0076
napG
Periplasmic nitrate reductase, ferredoxin-type protein NapG
HD0077
napH
Periplasmic nitrate reductase, polyferredoxin NapH
HD0078
napB
Nitrate reductase cytochrome c550-type subunit
HD0079
napC
Cytochrome c-type protein NapC
Position: -95
Score: 4.2
Sequence: TACCTCAATTTAATTG
Locus tag: HD0991
Name: focA
Funciton: Formate transporter, FNT family
Locus tag: HD0990
Name: pflB
Funciton: Pyruvate formate-lyase (EC 2.3.1.54)
HD0991
focA
Formate transporter, FNT family
HD0990
pflB
Pyruvate formate-lyase (EC 2.3.1.54)
Position: -143
Score: 4.4
Sequence: TACCTAATTTGCGTTA
Locus tag: HD1393
Name: torY
Funciton: Biotin sulfoxide reductase, cytochrome c-type
Locus tag: HD1394
Name: torZ
Funciton: Biotin sulfoxide reductase
HD1393
torY
Biotin sulfoxide reductase, cytochrome c-type
HD1394
torZ
Biotin sulfoxide reductase
Position: -110
Score: 4.1
Sequence: TAACCCTTTCTAGTGG
Locus tag: HD0278
Name: arcA
Funciton: Anaerobic metabolism transcriptional regulator arcA, OmpR family
HD0278
arcA
Anaerobic metabolism transcriptional regulator arcA, OmpR family
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