Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Crp in Shewanella sp ANA-3

Properties
Regulator type: Transcription factor
TF locus tag: Shewana3_0617
Regulator family: CRP
Regulation mode: repressor (activator)
Biological process: Carbon catabolism
Effector: Cyclic 3',5'-AMP
Regulog: Crp - Shewanellaceae
Statistics of regulated genes:
- Genes 335
- Operons 178
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 2713 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -315
Score: 3.9
Sequence: AAGTATGAATCAGGTCACACTC
Locus tag: Shewana3_0432
Name: yniC
Funciton: 2-deoxyglucose-6-phosphate hydrolase YniC
Shewana3_0432
yniC
2-deoxyglucose-6-phosphate hydrolase YniC
Position: -241
Score: 4.9
Sequence: AAACGAGATCTAAATCACATTT
Locus tag: Shewana3_1134
Name: SO3421
Funciton: b-type cytochrome, putative
Shewana3_1134
SO3421
b-type cytochrome, putative
Position: -222
Score: 4.2
Sequence: TTTTGTGATTAGAATCTCAGCA
Locus tag: Shewana3_0231
Name: ccmA
Funciton: ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Locus tag: Shewana3_0230
Name: ccmB
Funciton: ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Locus tag: Shewana3_0229
Name: ccmC
Funciton: cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Locus tag: Shewana3_0228
Name: ccmD
Funciton: cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Locus tag: Shewana3_0227
Name: ccmE
Funciton: cytochrome c-type biogenesis protein CcmE, heme chaperone
Shewana3_0231
ccmA
ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA
Shewana3_0230
ccmB
ABC transporter involved in cytochrome c biogenesis, CcmB subunit
Shewana3_0229
ccmC
cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE
Shewana3_0228
ccmD
cytochrome c-type biogenesis protein CcmD, interacts with CcmCE
Shewana3_0227
ccmE
cytochrome c-type biogenesis protein CcmE, heme chaperone
Position: -129
Score: 4.3
Sequence: CAGCGTGATTGCGATCGCATTT
Locus tag: Shewana3_0938
Name: nqrA-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Locus tag: Shewana3_0939
Name: nqrB-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Locus tag: Shewana3_0940
Name: nqrC-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Locus tag: Shewana3_0941
Name: nqrD-1
Funciton: Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Locus tag: Shewana3_0942
Name: nqrE-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Locus tag: Shewana3_0943
Name: nqrF-2
Funciton: Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Shewana3_0938
nqrA-2
Na(+)-translocating NADH-quinone reductase subunit A (EC 1.6.5.-)
Shewana3_0939
nqrB-2
Na(+)-translocating NADH-quinone reductase subunit B (EC 1.6.5.-)
Shewana3_0940
nqrC-2
Na(+)-translocating NADH-quinone reductase subunit C (EC 1.6.5.-)
Shewana3_0941
nqrD-1
Na(+)-translocating NADH-quinone reductase subunit D (EC 1.6.5.-)
Shewana3_0942
nqrE-2
Na(+)-translocating NADH-quinone reductase subunit E (EC 1.6.5.-)
Shewana3_0943
nqrF-2
Na(+)-translocating NADH-quinone reductase subunit F (EC 1.6.5.-)
Position: -135
Score: 3.9
Sequence: AAGTTAGAATCAGATCACACTT
Locus tag: Shewana3_1460
Name: fadI
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Locus tag: Shewana3_1461
Name: fadJ
Funciton: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Shewana3_1460
fadI
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
Shewana3_1461
fadJ
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Position: -176
Score: 4.2
Sequence: GTTAGTGATGGCGATCACAAAC
Locus tag: Shewana3_2391
Name: SO2586
Funciton: inactive homolog of metal-dependent proteases, putative molecular chaperone
Locus tag: Shewana3_2390
Name: SO2585
Funciton: hypothetical protein
Locus tag: Shewana3_2389
Name: SO2584
Funciton: Tlr1621 protein
Shewana3_2391
SO2586
inactive homolog of metal-dependent proteases, putative molecular chaperone
Shewana3_2390
SO2585
hypothetical protein
Shewana3_2389
SO2584
Tlr1621 protein
Position: -78
Score: 4.2
Sequence: AAGCGTGAGCTAACGCACACAA
Locus tag: Shewana3_0438
Name: SO0439
Funciton: hypothetical protein
Shewana3_0438
SO0439
hypothetical protein
Position: -165
Score: 4.1
Sequence: TTGTGTGATCATAGTTGCAAAA
Locus tag: Shewana3_3153
Name: SO3552
Funciton: Von Willebrand factor type A domain protein
Locus tag: Shewana3_3152
Name: SO3551
Funciton: RNA polymerase sigma-70 factor, ECF subfamily
Locus tag: Shewana3_3151
Name: null
Funciton: hypothetical protein
Shewana3_3153
SO3552
Von Willebrand factor type A domain protein
Shewana3_3152
SO3551
RNA polymerase sigma-70 factor, ECF subfamily
Shewana3_3151
hypothetical protein
Position: -109
Score: 3.9
Sequence: AAAATCGATTTTGCTCACAGTA
Locus tag: Shewana3_3046
Name: SO1328
Funciton: transcriptional regulator, LysR family
Shewana3_3046
SO1328
transcriptional regulator, LysR family
Position: -135
Score: 4.2
Sequence: AATTGTGACTAAGATTAAATTG
Locus tag: Shewana3_0716
Name: SO3914
Funciton: ferrichrome-iron receptor
Locus tag: Shewana3_0717
Name: piuC
Funciton: iron-uptake factor PiuC
Shewana3_0716
SO3914
ferrichrome-iron receptor
Shewana3_0717
piuC
iron-uptake factor PiuC
Position: -80
Score: 4.8
Sequence: AAATTTGAGCTTGATCACACTA
Locus tag: Shewana3_0095
Name: Shewana3_0095
Funciton: hypothetical protein
Shewana3_0095
Shewana3_0095
hypothetical protein
Position: -113
Score: 4.1
Sequence: AAATGTGCGATGAGTAACAAAA
Locus tag: Shewana3_0581
Name: bfd
Funciton: bacterioferritin-associated ferredoxin
Shewana3_0581
bfd
bacterioferritin-associated ferredoxin
Position: -261
Score: 4.2
Sequence: AGTTGTGATCTTTGGCGCGTAT
Locus tag: Shewana3_1157
Name: SO3395
Funciton: hypothetical protein
Shewana3_1157
SO3395
hypothetical protein
Position: -117
Score: 4.2
Sequence: TATTTTGATTGTGATCTCTTTA
Locus tag: Shewana3_3180
Name: SO3588
Funciton: gpr1/fun34/yaaH family protein
Shewana3_3180
SO3588
gpr1/fun34/yaaH family protein
Position: -217
Score: 4.1
Sequence: TTTCGCGATAAATATCAAACTT
Position: -60
Score: 4.1
Sequence: AAAAATGAACTAGATCAAAATA
Locus tag: Shewana3_3088
Name: SO1278
Funciton: methyl-accepting chemotaxis protein
Shewana3_3088
SO1278
methyl-accepting chemotaxis protein
Position: -149
Score: 3.9
Sequence: AACTTTGATCCCGATCGACTAT
Locus tag: Shewana3_3429
Name: napD
Funciton: periplasmic nitrate reductase component NapD
Locus tag: Shewana3_3430
Name: napA
Funciton: periplasmic nitrate reductase precursor (EC 1.7.99.4)
Locus tag: Shewana3_3431
Name: napG
Funciton: ferredoxin-type protein NapG (periplasmic nitrate reductase)
Locus tag: Shewana3_3432
Name: napH
Funciton: polyferredoxin NapH (periplasmic nitrate reductase)
Locus tag: Shewana3_3433
Name: napB
Funciton: nitrate reductase cytochrome c550-type subunit
Shewana3_3429
napD
periplasmic nitrate reductase component NapD
Shewana3_3430
napA
periplasmic nitrate reductase precursor (EC 1.7.99.4)
Shewana3_3431
napG
ferredoxin-type protein NapG (periplasmic nitrate reductase)
Shewana3_3432
napH
polyferredoxin NapH (periplasmic nitrate reductase)
Shewana3_3433
napB
nitrate reductase cytochrome c550-type subunit
Position: -140
Score: 4.4
Sequence: AAATTTGAACCACATCACACAG
Locus tag: Shewana3_0738
Name: Sputcn32_0777
Funciton: hypothetical protein
Shewana3_0738
Sputcn32_0777
hypothetical protein
Position: -150
Score: 4.2
Sequence: AAATGTTATCTTTATCACTCAG
Locus tag: Shewana3_2985
Name: SO1389
Funciton: ROK family protein, in a cluster with chitinase
Shewana3_2985
SO1389
ROK family protein, in a cluster with chitinase
Position: -233
Score: 4.2
Sequence: CTGAGTGATAAAGATAACATTT
Locus tag: Shewana3_2986
Name: SO1388
Funciton: Xaa-Pro aminopeptidase (EC 3.4.11.9)
Shewana3_2986
SO1388
Xaa-Pro aminopeptidase (EC 3.4.11.9)
Position: -135
Score: 3.9
Sequence: AAGTGTGACCTAAATCTAGTTG
Locus tag: Shewana3_1042
Name: deoA
Funciton: thymidine phosphorylase (EC 2.4.2.4)
Locus tag: Shewana3_1043
Name: deoB
Funciton: phosphopentomutase (EC 5.4.2.7)
Locus tag: Shewana3_1044
Name: deoD-2
Funciton: purine nucleoside phosphorylase (EC 2.4.2.1)
Shewana3_1042
deoA
thymidine phosphorylase (EC 2.4.2.4)
Shewana3_1043
deoB
phosphopentomutase (EC 5.4.2.7)
Shewana3_1044
deoD-2
purine nucleoside phosphorylase (EC 2.4.2.1)
Position: -102
Score: 4.6
Sequence: TTAGGTGATCTTTGTCACAGAT
Locus tag: Shewana3_1628
Name: yceI
Funciton: hypothetical protein
Locus tag: Shewana3_1629
Name: SO2891
Funciton: type IIA topoisomerase, B subunit
Shewana3_1628
yceI
hypothetical protein
Shewana3_1629
SO2891
type IIA topoisomerase, B subunit
Position: -132
Score: 3.7
Sequence: CACTATGATCTGCTTCTAATTT
Position: -103
Score: 3.7
Sequence: TAATGAGCCCCGCTTCAAACTT
Locus tag: Shewana3_0601
Name: petA
Funciton: ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Locus tag: Shewana3_0602
Name: petB
Funciton: ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Locus tag: Shewana3_0603
Name: petC
Funciton: ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Locus tag: Shewana3_0604
Name: sspA
Funciton: stringent starvation protein A
Locus tag: Shewana3_0605
Name: sspB
Funciton: stringent starvation protein B
Shewana3_0601
petA
ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2)
Shewana3_0602
petB
ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)
Shewana3_0603
petC
ubiquinol cytochrome C oxidoreductase, cytochrome C1 subunit
Shewana3_0604
sspA
stringent starvation protein A
Shewana3_0605
sspB
stringent starvation protein B
Position: -136
Score: 4.1
Sequence: TTCCTTGATTTAGATCACACTC
Locus tag: Shewana3_2830
Name: null
Funciton: hypothetical protein
Shewana3_2830
hypothetical protein
Position: -209
Score: 3.9
Sequence: AAATGTGATCTACGCCTAAATG
Locus tag: Shewana3_1750
Name: icd
Funciton: isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Shewana3_1750
icd
isocitrate dehydrogenase [NADP] (EC 1.1.1.42); monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Position: -163
Score: 4.1
Sequence: TTTCGTGAGCTAGATTAGATAT
Locus tag: Shewana3_0133
Name: SO0141
Funciton: sensory box/GGDEF family protein
Shewana3_0133
SO0141
sensory box/GGDEF family protein
Position: -96
Score: 4.5
Sequence: AAGTGTGATACTTGCCACAAAA
Locus tag: Shewana3_2761
Name: SO1689
Funciton: lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); copper-translocating P-type ATPase (EC 3.6.3.4)
Shewana3_2761
SO1689
lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); copper-translocating P-type ATPase (EC 3.6.3.4)
Position: -63
Score: 3.8
Sequence: TATTTTGATATTGAATAAAATA
Position: -34
Score: 3.7
Sequence: TGATGTGCGAGTGTTCAAATAG
Position: -2
Score: 4
Sequence: TTATGTTATTATTGCCACAAAA
Locus tag: Shewana3_1787
Name: ycbW
Funciton: probable membrane protein YcbW
Shewana3_1787
ycbW
probable membrane protein YcbW
Position: -102
Score: 4.7
Sequence: TTATGCGAGCGGAATCACATTT
Locus tag: Shewana3_2579
Name: SO2797
Funciton: glutaredoxin
Shewana3_2579
SO2797
glutaredoxin
Position: -144
Score: 4.2
Sequence: AGTCGCGACTTTGTTCACAATT
Locus tag: Shewana3_1040
Name: tsx
Funciton: nucleoside-specific channel-forming protein, Tsx
Shewana3_1040
tsx
nucleoside-specific channel-forming protein, Tsx
Position: -225
Score: 3.8
Sequence: ATGCGTGATCCGTCGCAATTAT
Position: -131
Score: 3.9
Sequence: TTTGATGATCCACCTCAAACAA
Locus tag: Shewana3_3911
Name: null
Funciton: hypothetical protein
Locus tag: Shewana3_3912
Name: SO4505
Funciton: hypothetical protein probably related to Formate dehydrogenase function
Locus tag: Shewana3_3913
Name: SO4506
Funciton: iron-sulfur cluster-binding protein
Locus tag: Shewana3_3914
Name: SO4507
Funciton: putative formate dehydrogenase-specific chaperone
Locus tag: Shewana3_3915
Name: SO4508
Funciton: formate dehydrogenase subunit or accessory protein
Locus tag: Shewana3_3916
Name: SO4509
Funciton: formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Locus tag: Shewana3_3917
Name: fdhB-1
Funciton: formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Locus tag: Shewana3_3918
Name: SO4511
Funciton: formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Shewana3_3911
hypothetical protein
Shewana3_3912
SO4505
hypothetical protein probably related to Formate dehydrogenase function
Shewana3_3913
SO4506
iron-sulfur cluster-binding protein
Shewana3_3914
SO4507
putative formate dehydrogenase-specific chaperone
Shewana3_3915
SO4508
formate dehydrogenase subunit or accessory protein
Shewana3_3916
SO4509
formate dehydrogenase-O, major subunit (EC 1.2.1.2)
Shewana3_3917
fdhB-1
formate dehydrogenase-O, iron-sulfur subunit (EC 1.2.1.2); putative formate dehydrogenase iron-sulfur subunit (EC 1.2.1.2)
Shewana3_3918
SO4511
formate dehydrogenase -O, gamma subunit (EC 1.2.1.2)
Position: -316
Score: 4.9
Sequence: TTTTCTGATTCAGCTCACATTA
Locus tag: Shewana3_4030
Name: Sputcn32_3857
Funciton: hypothetical protein
Locus tag: Shewana3_4031
Name: Sputcn32_3858
Funciton: cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Locus tag: Shewana3_4032
Name: Sputcn32_3859
Funciton: cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Locus tag: Shewana3_4033
Name: Sputcn32_3860
Funciton: cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Locus tag: Shewana3_4034
Name: Sputcn32_3861
Funciton: cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Locus tag: Shewana3_4035
Name: Sputcn32_3862
Funciton: heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Shewana3_4030
Sputcn32_3857
hypothetical protein
Shewana3_4031
Sputcn32_3858
cytochrome O ubiquinol oxidase subunit II (EC 1.10.3.-)
Shewana3_4032
Sputcn32_3859
cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-)
Shewana3_4033
Sputcn32_3860
cytochrome O ubiquinol oxidase subunit III (EC 1.10.3.-)
Shewana3_4034
Sputcn32_3861
cytochrome O ubiquinol oxidase subunit IV (EC 1.10.3.-)
Shewana3_4035
Sputcn32_3862
heme O synthase, protoheme IX farnesyltransferase (EC 2.5.1.-) COX10-CtaB
Position: -125
Score: 4.1
Sequence: AATTGTGCCGGATATCACTTTC
Locus tag: Shewana3_2556
Name: null
Funciton: hypothetical protein
Shewana3_2556
hypothetical protein
Position: -151
Score: 3.8
Sequence: CTCAATGATCCAGCTCACACTT
Locus tag: Shewana3_0147
Name: pckA
Funciton: phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Shewana3_0147
pckA
phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)
Position: -65
Score: 3.9
Sequence: TTACGTGACTTACAGCACGTCT
Locus tag: Shewana3_0750
Name: sfcA
Funciton: NAD-dependent malic enzyme (EC 1.1.1.38)
Shewana3_0750
sfcA
NAD-dependent malic enzyme (EC 1.1.1.38)
Position: -83
Score: 4
Sequence: TCTTGTGAGCCAGTTCACGCCT
Locus tag: Shewana3_0651
Name: SO3987
Funciton: hypothetical protein
Shewana3_0651
SO3987
hypothetical protein
Position: -128
Score: 4.1
Sequence: AAGCGTGATGGATTTTGCAAAA
Locus tag: Shewana3_4003
Name: yhgI
Funciton: NfuA Fe-S protein maturation
Shewana3_4003
yhgI
NfuA Fe-S protein maturation
Position: -312
Score: 4.2
Sequence: TATTGTAATTTAATCAACATTT
Position: -119
Score: 4.2
Sequence: GGATATGATGGGTTTCACATTT
Locus tag: Shewana3_3669
Name: SO4118
Funciton: NADP-dependent malic enzyme (EC 1.1.1.40)
Locus tag: Shewana3_3668
Name: mshH
Funciton: MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Locus tag: Shewana3_3667
Name: mshI
Funciton: MSHA biogenesis protein MshI
Shewana3_3669
SO4118
NADP-dependent malic enzyme (EC 1.1.1.40)
Shewana3_3668
mshH
MSHA biogenesis protein MshH, GGDEF:EAL domain protein
Shewana3_3667
mshI
MSHA biogenesis protein MshI
Position: -85
Score: 4.4
Sequence: GGATGTGAGTTGCTTCACAATT
Locus tag: Shewana3_1142
Name: swp_3747
Funciton: hypothetical protein
Shewana3_1142
swp_3747
hypothetical protein
Position: -141
Score: 4.2
Sequence: CAATGTGAGCGGCTTCAAATTG
Locus tag: Shewana3_0817
Name: SO3776
Funciton: hypothetical protein
Shewana3_0817
SO3776
hypothetical protein
Position: -234
Score: 3.8
Sequence: TTTTTTGATTCAGATCAAAGCC
Locus tag: Shewana3_1892
Name: rplY
Funciton: LSU ribosomal protein L25p
Shewana3_1892
rplY
LSU ribosomal protein L25p
Position: -120
Score: 4.4
Sequence: TAGAGTGAGATTAATCACAGTT
Locus tag: Shewana3_0903
Name: fkpA
Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
Shewana3_0903
fkpA
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor (EC 5.2.1.8)
Position: -131
Score: 4.4
Sequence: TATAGTGTTGTCCGTCACATTT
Locus tag: Shewana3_0819
Name: SO3774
Funciton: proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Shewana3_0819
SO3774
proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
Position: -53
Score: 4.5
Sequence: TTTTGTTATACTCGTCACCTTT
Locus tag: Shewana3_0800
Name: SO3797
Funciton: probable collagenase (EC 3.4.24.3)
Shewana3_0800
SO3797
probable collagenase (EC 3.4.24.3)
Position: -143
Score: 3.9
Sequence: TTATGCGATATTGTTCTAATTC
Locus tag: Shewana3_3416
Name: serA
Funciton: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Locus tag: Shewana3_3417
Name: SO0861
Funciton: folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
Shewana3_3416
serA
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
Shewana3_3417
SO0861
folate-dependent protein for Fe/S cluster synthesis/repair in oxidative stress
Position: -70
Score: 3.9
Sequence: TTTTGCAACTATGATCACACAA
Locus tag: Shewana3_3154
Name: SO3553
Funciton: putative sulfate permease
Shewana3_3154
SO3553
putative sulfate permease
Position: -150
Score: 4.5
Sequence: CTATGTGATCAGGATCTCAGTT
Locus tag: Shewana3_2667
Name: miaE
Funciton: tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)
Shewana3_2667
miaE
tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-)
Position: -234
Score: 4.3
Sequence: AGATGTGATCTAGATCGGCTTA
Locus tag: Shewana3_2937
Name: Sputcn32_1245
Funciton: transcriptional regulator, MarR family
Shewana3_2937
Sputcn32_1245
transcriptional regulator, MarR family
Position: -131
Score: 3.9
Sequence: AAGTGTGAACAACAACACTATT
Position: -108
Score: 4.1
Sequence: CATTTTGATCTAGCGCAAACTT
Locus tag: Shewana3_0658
Name: nrfA
Funciton: cytochrome c552 precursor (EC 1.7.2.2)
Shewana3_0658
nrfA
cytochrome c552 precursor (EC 1.7.2.2)
Position: -84
Score: 4.6
Sequence: TTTTGTGAAACGTTTCACTATT
Position: -25
Score: 3.8
Sequence: TAGCGTGTTTTTCATCGAATTT
Locus tag: Shewana3_3866
Name: SO0319
Funciton: conserved domain protein
Locus tag: Shewana3_3865
Name: SO0320
Funciton: conserved domain protein
Locus tag: Shewana3_3864
Name: SO0321
Funciton: hypothetical protein
Shewana3_3866
SO0319
conserved domain protein
Shewana3_3865
SO0320
conserved domain protein
Shewana3_3864
SO0321
hypothetical protein
Position: -79
Score: 3.9
Sequence: ACCCGCGATCTTGATCACACTT
Locus tag: Shewana3_1891
Name: SO2111
Funciton: hypothetical protein
Shewana3_1891
SO2111
hypothetical protein
Position: -262
Score: 4.4
Sequence: AAGTTTGACATGGGTCACAGTT
Locus tag: Shewana3_0451
Name: nadC
Funciton: di-and tricarboxylate transporter
Shewana3_0451
nadC
di-and tricarboxylate transporter
Position: -205
Score: 4
Sequence: TTTTGTGAGCAAGAGCTAAATA
Position: -153
Score: 4.4
Sequence: CAAAGTGACGTAGCTCACAAAG
Locus tag: Shewana3_2232
Name: gloA
Funciton: lactoylglutathione lyase (EC 4.4.1.5)
Shewana3_2232
gloA
lactoylglutathione lyase (EC 4.4.1.5)
Position: -234
Score: 4.3
Sequence: AGATGTGATCTAGATCGGCTTA
Locus tag: Shewana3_2937
Name: Sputcn32_1245
Funciton: transcriptional regulator, MarR family
Shewana3_2937
Sputcn32_1245
transcriptional regulator, MarR family
Position: -320
Score: 5.2
Sequence: AAGTGTGACACACATCACATAT
Position: -276
Score: 4.4
Sequence: AAATGTTATTTTCTTAACAGTT
Locus tag: Shewana3_1958
Name: null
Funciton: TonB-dependent receptor
Shewana3_1958
TonB-dependent receptor
Position: -70
Score: 3.9
Sequence: TTTTGCAACTATGATCACACAA
Locus tag: Shewana3_3154
Name: SO3553
Funciton: putative sulfate permease
Locus tag: Shewana3_3155
Name: purE
Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Shewana3_3156
Name: purK
Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Shewana3_3157
Name: SO3556
Funciton: cyclic nucleotide phosphodiesterase, putative
Shewana3_3154
SO3553
putative sulfate permease
Shewana3_3155
purE
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Shewana3_3156
purK
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Shewana3_3157
SO3556
cyclic nucleotide phosphodiesterase, putative
Position: -171
Score: 4.5
Sequence: AATAGTGATAAAGATCGCGTTT
Locus tag: Shewana3_1429
Name: null
Funciton: hypothetical protein
Shewana3_1429
hypothetical protein
Position: -187
Score: 3.8
Sequence: TTGGGTGAGCACTGTCACAGAT
Locus tag: Shewana3_0274
Name: moaA
Funciton: molybdenum cofactor biosynthesis protein MoaA
Locus tag: Shewana3_0275
Name: moaC
Funciton: molybdenum cofactor biosynthesis protein MoaC
Locus tag: Shewana3_0276
Name: moaD
Funciton: molybdenum cofactor biosynthesis protein MoaD
Locus tag: Shewana3_0277
Name: moaE
Funciton: molybdenum cofactor biosynthesis protein MoaE
Locus tag: Shewana3_0278
Name: modA
Funciton: molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Locus tag: Shewana3_0279
Name: modB
Funciton: molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Locus tag: Shewana3_0280
Name: modC
Funciton: molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Shewana3_0274
moaA
molybdenum cofactor biosynthesis protein MoaA
Shewana3_0275
moaC
molybdenum cofactor biosynthesis protein MoaC
Shewana3_0276
moaD
molybdenum cofactor biosynthesis protein MoaD
Shewana3_0277
moaE
molybdenum cofactor biosynthesis protein MoaE
Shewana3_0278
modA
molybdenum ABC transporter, substrate-binding protein (TC 3.A.1.8.1)
Shewana3_0279
modB
molybdenum transport system permease protein ModB (TC 3.A.1.8.1)
Shewana3_0280
modC
molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)
Position: -140
Score: 4.4
Sequence: TTTTGTGATGTTTCTCTACATA
Locus tag: Shewana3_2628
Name: SO1821
Funciton: outer membrane porin, putative
Shewana3_2628
SO1821
outer membrane porin, putative
Position: -187
Score: 4.3
Sequence: AAACGCGATCTTTATCACTATT
Locus tag: Shewana3_1428
Name: SO3120
Funciton: oxidoreductase, Gfo/Idh/MocA family
Shewana3_1428
SO3120
oxidoreductase, Gfo/Idh/MocA family
Position: -96
Score: 4.2
Sequence: CATTGTGAAGCGTATCATGTAA
Locus tag: Shewana3_3683
Name: SO4138
Funciton: hypothetical protein
Shewana3_3683
SO4138
hypothetical protein
Position: -234
Score: 4
Sequence: CAATTTGATGTGGTTCCAATAA
Position: -125
Score: 4.1
Sequence: TGCTGAGATTCTAATCACAAAA
Locus tag: Shewana3_0232
Name: scyA
Funciton: cytochrome c-type protein
Shewana3_0232
scyA
cytochrome c-type protein
Position: -266
Score: 4.5
Sequence: ATGTGTGACATGGATCTAATTT
Locus tag: Shewana3_3510
Name: argR
Funciton: arginine pathway regulatory protein ArgR, repressor of arg regulon
Shewana3_3510
argR
arginine pathway regulatory protein ArgR, repressor of arg regulon
Position: -95
Score: 4
Sequence: TCTTGTGAATTGAGTCACAGAG
Locus tag: Shewana3_2588
Name: SO2806
Funciton: hypothetical protein
Shewana3_2588
SO2806
hypothetical protein
Position: -317
Score: 4.1
Sequence: TTTTGTGAGCAAGCTAGAATTA
Locus tag: Shewana3_0871
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Locus tag: Shewana3_0872
Name: SO3719
Funciton: hypothetical protein
Shewana3_0871
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Shewana3_0872
SO3719
hypothetical protein
Position: -66
Score: 4.1
Sequence: GAGTGTGACCTGATTCATACTT
Locus tag: Shewana3_0433
Name: acnB
Funciton: aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Shewana3_0433
acnB
aconitate hydratase 2 (EC 4.2.1.3) @ 2-methylisocitrate dehydratase (EC 4.2.1.99)
Position: -92
Score: 4.1
Sequence: TTCTGTGATCAAGTTAACCTTC
Locus tag: Shewana3_3680
Name: udp
Funciton: Uridine phosphorylase (EC 2.4.2.3)
Shewana3_3680
udp
Uridine phosphorylase (EC 2.4.2.3)
Position: -94
Score: 4.3
Sequence: TTACATGATACGCTTCACAATG
Locus tag: Shewana3_3684
Name: Sputcn32_0539
Funciton: mechanosensitive ion channel
Locus tag: Shewana3_3685
Name: SO4139
Funciton: tetratricopeptide repeat family protein
Shewana3_3684
Sputcn32_0539
mechanosensitive ion channel
Shewana3_3685
SO4139
tetratricopeptide repeat family protein
Position: -105
Score: 4
Sequence: GGATGTGAGCCGCTTCGCAAAT
Locus tag: Shewana3_1574
Name: SO2858
Funciton: hypothetical protein
Locus tag: Shewana3_1575
Name: SO2857
Funciton: sodium solute symporter family protein
Locus tag: Shewana3_1576
Name: SO2856
Funciton: predicted signal-transduction protein containing cAMP-binding and CBS domains
Locus tag: Shewana3_1577
Name: SO2855
Funciton: DNA polymerase III epsilon subunit (EC 2.7.7.7)
Shewana3_1574
SO2858
hypothetical protein
Shewana3_1575
SO2857
sodium solute symporter family protein
Shewana3_1576
SO2856
predicted signal-transduction protein containing cAMP-binding and CBS domains
Shewana3_1577
SO2855
DNA polymerase III epsilon subunit (EC 2.7.7.7)
Position: -138
Score: 3.7
Sequence: AAGTTTGCGCTAGATCAAAATG
Position: -115
Score: 4.5
Sequence: AATAGTGTTGTTGTTCACACTT
Locus tag: Shewana3_0657
Name: narQ
Funciton: Nitrate/nitrite sensor protein (EC 2.7.3.-)
Locus tag: Shewana3_0656
Name: narP
Funciton: Nitrate/nitrite response regulator protein
Shewana3_0657
narQ
Nitrate/nitrite sensor protein (EC 2.7.3.-)
Shewana3_0656
narP
Nitrate/nitrite response regulator protein
Position: -86
Score: 4.3
Sequence: TATAGTGATTTCAATCACAACC
Locus tag: Shewana3_0355
Name: ilvC
Funciton: Ketol-acid reductoisomerase (EC 1.1.1.86)
Shewana3_0355
ilvC
Ketol-acid reductoisomerase (EC 1.1.1.86)
Position: -144
Score: 4.3
Sequence: TTTTGTGATTTAGCGCATAACT
Locus tag: Shewana3_0542
Name: SO0544
Funciton: sensory box histidine kinase
Locus tag: Shewana3_0543
Name: SO0544.1
Funciton: response regulator receiver protein
Shewana3_0542
SO0544
sensory box histidine kinase
Shewana3_0543
SO0544.1
response regulator receiver protein
Position: -193
Score: 4.1
Sequence: AGTTATGCGCTAAATCACAAAA
Locus tag: Shewana3_0541
Name: SO0543
Funciton: hypothetical protein
Shewana3_0541
SO0543
hypothetical protein
Position: -127
Score: 4.5
Sequence: AATAGTGAGCAATATCACGATT
Locus tag: Shewana3_2889
Name: SO1539
Funciton: Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Shewana3_2889
SO1539
Probable acylaminoacyl-peptidase (EC 3.4.19.1)
Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATTA
Locus tag: Shewana3_4111
Name: cytcB
Funciton: diheme cytochrome c4
Shewana3_4111
cytcB
diheme cytochrome c4
Position: -276
Score: 5
Sequence: AAGTGTGATCTTGTTCTCACTT
Position: -153
Score: 4.4
Sequence: CATTGAGATTTTTGTCACATAA
Locus tag: Shewana3_2671
Name: feoA
Funciton: Ferrous iron transport protein A
Locus tag: Shewana3_2670
Name: feoB
Funciton: Ferrous iron transport protein B
Shewana3_2671
feoA
Ferrous iron transport protein A
Shewana3_2670
feoB
Ferrous iron transport protein B
Position: -270
Score: 4.2
Sequence: TTTAGTGATATTAGTCAACTAA
Locus tag: Shewana3_0618
Name: sel1
Funciton: Sel1 domain protein repeat-containing protein precursor
Shewana3_0618
sel1
Sel1 domain protein repeat-containing protein precursor
Position: -82
Score: 4.1
Sequence: AAACGCGAACTAACTCGCATTT
Locus tag: Shewana3_2573
Name: cdd
Funciton: cytidine deaminase (EC 3.5.4.5)
Shewana3_2573
cdd
cytidine deaminase (EC 3.5.4.5)
Position: -149
Score: 4.7
Sequence: AATCGTGATATTGCTCACTATT
Locus tag: Shewana3_2890
Name: icd
Funciton: Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Shewana3_2890
icd
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41)
Position: -92
Score: 4.7
Sequence: AAGTGTGACGAACTTCTCATTT
Position: -52
Score: 3.9
Sequence: AAGTGTTAACATGAGCACACTT
Locus tag: Shewana3_0387
Name: cyaA
Funciton: Adenylate cyclase (EC 4.6.1.1)
Shewana3_0387
cyaA
Adenylate cyclase (EC 4.6.1.1)
Position: -167
Score: 4.6
Sequence: AAATGTGATATTGGTCTTAAAT
Locus tag: Shewana3_2541
Name: Swoo_2741
Funciton: Alkyl hydroperoxide reductase subunit C-like protein
Shewana3_2541
Swoo_2741
Alkyl hydroperoxide reductase subunit C-like protein
Position: -183
Score: 4.4
Sequence: TTACATGATGCAGCGCACATTT
Locus tag: Shewana3_2511
Name: cctA
Funciton: cytochrome c3
Shewana3_2511
cctA
cytochrome c3
Position: -96
Score: 4.7
Sequence: TAATGTGATCGGGGTAATATTT
Locus tag: Shewana3_4110
Name: engB
Funciton: GTP-binding protein EngB
Shewana3_4110
engB
GTP-binding protein EngB
Position: -95
Score: 4.4
Sequence: AAATATTACCCCGATCACATTA
Locus tag: Shewana3_4111
Name: cytcB
Funciton: Cytochrome c4
Shewana3_4111
cytcB
Cytochrome c4
Position: -9
Score: 4.3
Sequence: TAATTTGATATGTACCATATAA
Locus tag: Shewana3_3695
Name: SO4154
Funciton: transcriptional regulator, LysR family
Shewana3_3695
SO4154
transcriptional regulator, LysR family
Position: -113
Score: 4.7
Sequence: TATTGTGATCAGTATCAAACAC
Locus tag: Shewana3_0428
Name: lpdA
Funciton: Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Shewana3_0428
lpdA
Dihydrolipoamide dehydrogenase (EC 1.8.1.4)
Position: -239
Score: 4.3
Sequence: CAATGTGATTGATATCAATAAA
Locus tag: Shewana3_3348
Name: nhaD
Funciton: Na+/H+ antiporter NhaD type
Shewana3_3348
nhaD
Na+/H+ antiporter NhaD type
Position: -74
Score: 5.2
Sequence: AAATGTGATCTGTCTTACATTT
Locus tag: Shewana3_0989
Name: lipB
Funciton: Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Locus tag: Shewana3_0988
Name: lipA
Funciton: Lipoate synthase
Shewana3_0989
lipB
Octanoate-[acyl-carrier-protein]-protein-N-octanoyltransferase
Shewana3_0988
lipA
Lipoate synthase
Position: -97
Score: 4.1
Sequence: TTTTGTGCGCATCTTCATAAAT
Locus tag: Shewana3_3845
Name: ygbA
Funciton: nitrosative stress induced protein
Shewana3_3845
ygbA
nitrosative stress induced protein
Position: -99
Score: 5.2
Sequence: AAATGTGATCTATGTCAAAAAA
Locus tag: Shewana3_3963
Name: null
Funciton: hypothetical protein
Locus tag: Shewana3_3962
Name: nrfB
Funciton: Cytochrome c-type protein NrfB precursor
Locus tag: Shewana3_3961
Name: nrfC
Funciton: 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Locus tag: Shewana3_3960
Name: nrfD-2
Funciton: nitrite reductase, quinol dehydrogenase component, NrfD
Shewana3_3963
hypothetical protein
Shewana3_3962
nrfB
Cytochrome c-type protein NrfB precursor
Shewana3_3961
nrfC
4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
Shewana3_3960
nrfD-2
nitrite reductase, quinol dehydrogenase component, NrfD
Position: -223
Score: 4.2
Sequence: TTGAGTGAAAGTCGTCACATAA
Locus tag: Shewana3_2521
Name: Sputcn32_2347
Funciton: methyl-accepting chemotaxis sensory transducer
Shewana3_2521
Sputcn32_2347
methyl-accepting chemotaxis sensory transducer
Position: -172
Score: 4.2
Sequence: AAGTGTGCTCATGTTAACACTT
Position: -132
Score: 4.3
Sequence: AAATGAGAAGTTCGTCACACTT
Locus tag: Shewana3_0386
Name: hemC
Funciton: Porphobilinogen deaminase (EC 2.5.1.61)
Locus tag: Shewana3_0385
Name: hemD
Funciton: Uroporphyrinogen-III synthase (EC 4.2.1.75)
Locus tag: Shewana3_0384
Name: hemX
Funciton: Homolog of E. coli HemX protein
Locus tag: Shewana3_0383
Name: hemY
Funciton: HemY domain-containing protein
Shewana3_0386
hemC
Porphobilinogen deaminase (EC 2.5.1.61)
Shewana3_0385
hemD
Uroporphyrinogen-III synthase (EC 4.2.1.75)
Shewana3_0384
hemX
Homolog of E. coli HemX protein
Shewana3_0383
hemY
HemY domain-containing protein
Position: -70
Score: 3.9
Sequence: TTTTGCAACTATGATCACACAA
Locus tag: Shewana3_3154
Name: SO3553
Funciton: putative sulfate permease
Locus tag: Shewana3_3155
Name: purE
Funciton: phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Locus tag: Shewana3_3156
Name: purK
Funciton: phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Locus tag: Shewana3_3157
Name: SO3556
Funciton: cyclic nucleotide phosphodiesterase, putative
Shewana3_3154
SO3553
putative sulfate permease
Shewana3_3155
purE
phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21)
Shewana3_3156
purK
phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21)
Shewana3_3157
SO3556
cyclic nucleotide phosphodiesterase, putative
Position: -144
Score: 3.9
Sequence: TTTTTAGATTGAGATAACAGAT
Position: -88
Score: 3.9
Sequence: AATTGATAAGAAGATCACACTA
Locus tag: Shewana3_2481
Name: hmgA
Funciton: Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Shewana3_2481
hmgA
Homogentisate 1,2-dioxygenase (EC 1.13.11.5)
Position: -104
Score: 4.6
Sequence: AAATGTGATGTAGCCCAAAAAG
Locus tag: Shewana3_2302
Name: fumB
Funciton: Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Shewana3_2302
fumB
Fumarate hydratase class I, aerobic (EC 4.2.1.2)
Position: -117
Score: 3.7
Sequence: TTATTTGATACGACTTAAGAAT
Position: -90
Score: 5.1
Sequence: ATTTGTTATATTTATCACATAA
Locus tag: Shewana3_0952
Name: Sbal_2136
Funciton: putative OMR family iron-siderophore receptor precursor
Shewana3_0952
Sbal_2136
putative OMR family iron-siderophore receptor precursor
Position: -187
Score: 4
Sequence: TTGTTTGAGGTGGATCATCAAA
Position: -91
Score: 4
Sequence: AATTGCGACGGATCACGCATTT
Locus tag: Shewana3_3910
Name: SO4503
Funciton: formate dehydrogenase chain D (EC 1.2.1.2)
Locus tag: Shewana3_3909
Name: SO4502
Funciton: conserved domain protein
Shewana3_3910
SO4503
formate dehydrogenase chain D (EC 1.2.1.2)
Shewana3_3909
SO4502
conserved domain protein
Position: -85
Score: 4.4
Sequence: GGATGTGAGTTGCTTCACAATT
Locus tag: Shewana3_1142
Name: null
Funciton: hypothetical protein
Locus tag: Shewana3_1143
Name: SO3412
Funciton: extracellular solute-binding proteins, family 3 protein
Locus tag: Shewana3_1144
Name: SO3411
Funciton: tricorn protease homolog (EC 3.4.21.-)
Shewana3_1142
hypothetical protein
Shewana3_1143
SO3412
extracellular solute-binding proteins, family 3 protein
Shewana3_1144
SO3411
tricorn protease homolog (EC 3.4.21.-)
Position: -77
Score: 3.9
Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: Shewana3_0402
Name: fdrC
Funciton: fumarate reductase cytochrome b subunit
Locus tag: Shewana3_0403
Name: frdA
Funciton: succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Shewana3_0404
Name: frdB
Funciton: succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Shewana3_0402
fdrC
fumarate reductase cytochrome b subunit
Shewana3_0403
frdA
succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Shewana3_0404
frdB
succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -136
Score: 4.6
Sequence: AATTGTGAACTGGTTCGCTTTT
Locus tag: Shewana3_4051
Name: prlC
Funciton: Oligopeptidase A (EC 3.4.24.70)
Shewana3_4051
prlC
Oligopeptidase A (EC 3.4.24.70)
Position: -157
Score: 4.4
Sequence: TTTTGTTACTCATCGCACATTT
Locus tag: Shewana3_0582
Name: SO0584
Funciton: methyl-accepting chemotaxis protein
Shewana3_0582
SO0584
methyl-accepting chemotaxis protein
Position: -130
Score: 4.8
Sequence: TCAAGTGATCAAGATCACATTT
Locus tag: Shewana3_0734
Name: Shewana3_0734
Funciton: outer membrane porin, putative
Shewana3_0734
Shewana3_0734
outer membrane porin, putative
Position: -210
Score: 4.1
Sequence: CTTTGTGCAGTGTATCACAAAG
Locus tag: Shewana3_0024
Name: fadB
Funciton: enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Locus tag: Shewana3_0023
Name: fadA
Funciton: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
Shewana3_0024
fadB
enoyl-CoA hydratase (EC 4.2.1.17) / delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Shewana3_0023
fadA
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ acetyl-CoA acetyltransferase (EC 2.3.1.9)
Position: -287
Score: 3.8
Sequence: AGTTAAGATACAGAGCACATTA
Position: -92
Score: 4.1
Sequence: ACTTGAGACTGGTTTCACATTA
Locus tag: Shewana3_3964
Name: Sbal_0179
Funciton: transcriptional regulator, LysR family
Locus tag: Shewana3_3965
Name: menD
Funciton: 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
Locus tag: Shewana3_3966
Name: SO4574
Funciton: 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
Locus tag: Shewana3_3967
Name: menC
Funciton: O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
Locus tag: Shewana3_3968
Name: SO4576
Funciton: O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)
Shewana3_3964
Sbal_0179
transcriptional regulator, LysR family
Shewana3_3965
menD
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase (EC 2.2.1.9)
Shewana3_3966
SO4574
2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase (EC 4.2.99.20)
Shewana3_3967
menC
O-succinylbenzoate-CoA synthase (EC 4.2.1.-)
Shewana3_3968
SO4576
O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26)
Position: -233
Score: 3.7
Sequence: AATATTGCGTTAGCTCGCATTT
Position: -189
Score: 3.7
Sequence: TATCGCGATTAGTTGCATATAA
Locus tag: Shewana3_3906
Name: ppc
Funciton: phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Locus tag: Shewana3_3907
Name: yceB
Funciton: uncharacterized lipoprotein YceB precursor
Shewana3_3906
ppc
phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Shewana3_3907
yceB
uncharacterized lipoprotein YceB precursor
Position: -307
Score: 3.9
Sequence: TTAATTGAAGCTGGTCGCATTT
Locus tag: Shewana3_3365
Name: SO0919
Funciton: Serine transporter, putative
Shewana3_3365
SO0919
Serine transporter, putative
Position: -155
Score: 5.1
Sequence: TTATGTGATGATGATCAAAATT
Locus tag: Shewana3_2386
Name: fadD1
Funciton: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Shewana3_2386
fadD1
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Position: -251
Score: 4.2
Sequence: ATTCTTGATGCATATCAAGAAT
Position: -191
Score: 4.2
Sequence: TAACATGATGCAGATCTAATTT
Locus tag: Shewana3_1881
Name: resA
Funciton: C-type cytochrome biogenesis protein ResA (thioredoxin)
Locus tag: Shewana3_1882
Name: SO2101
Funciton: lipoprotein, putative
Locus tag: Shewana3_1883
Name: null
Funciton: hypothetical protein
Locus tag: Shewana3_1884
Name: apbE
Funciton: thiamin biosynthesis lipoprotein ApbE
Locus tag: Shewana3_1885
Name: SO2104
Funciton: DNA-binding response regulator for Quinone-reactive Ni/Fe-hydrogenase
Locus tag: Shewana3_1886
Name: SO2105
Funciton: Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase ## FIG-predicted
Shewana3_1881
resA
C-type cytochrome biogenesis protein ResA (thioredoxin)
Shewana3_1882
SO2101
lipoprotein, putative
Shewana3_1883
hypothetical protein
Shewana3_1884
apbE
thiamin biosynthesis lipoprotein ApbE
Shewana3_1885
SO2104
DNA-binding response regulator for Quinone-reactive Ni/Fe-hydrogenase
Shewana3_1886
SO2105
Signal transduction histidine kinase for Quinone-reactive Ni/Fe-hydrogenase ## FIG-predicted
Position: -248
Score: 4.2
Sequence: TTATGTGAGCTGATGCAAGTTT
Locus tag: Shewana3_0862
Name: cobA
Funciton: uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Locus tag: Shewana3_0863
Name: cysD
Funciton: sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Locus tag: Shewana3_0864
Name: cysN
Funciton: sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Locus tag: Shewana3_0865
Name: Shew_1424
Funciton: sulfate permease, Trk-type
Locus tag: Shewana3_0866
Name: cysC
Funciton: adenylylsulfate kinase (EC 2.7.1.25)
Shewana3_0862
cobA
uroporphyrinogen-III methyltransferase (EC 2.1.1.107)
Shewana3_0863
cysD
sulfate adenylyltransferase subunit 2 (EC 2.7.7.4)
Shewana3_0864
cysN
sulfate adenylyltransferase subunit 1 (EC 2.7.7.4)
Shewana3_0865
Shew_1424
sulfate permease, Trk-type
Shewana3_0866
cysC
adenylylsulfate kinase (EC 2.7.1.25)
Position: -102
Score: 4.4
Sequence: TATTTTGACTCATGTCAAAAAT
Locus tag: Shewana3_0572
Name: SO0572
Funciton: enoyl-CoA hydratase (EC 4.2.1.17)
Shewana3_0572
SO0572
enoyl-CoA hydratase (EC 4.2.1.17)
Position: -95
Score: 4
Sequence: AATTTGGATGCAGGGCACATTT
Locus tag: Shewana3_3145
Name: phk
Funciton: Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Shewana3_3145
phk
Xylulose-5-phosphate phosphoketolase (EC 4.1.2.9)
Position: -176
Score: 4.3
Sequence: AAATGTTACGCCTATCCCATAT
Locus tag: Shewana3_3266
Name: SO3699.1
Funciton: hypothetical protein
Shewana3_3266
SO3699.1
hypothetical protein
Position: -199
Score: 4.1
Sequence: TTATGTGATTTTCACAACAACA
Position: -157
Score: 3.8
Sequence: AATTGTAAATTTTTGCATATAT
Locus tag: Shewana3_3679
Name: SO4131
Funciton: nucleoside-binding outer membrane protein
Shewana3_3679
SO4131
nucleoside-binding outer membrane protein
Position: -142
Score: 4.1
Sequence: TTATGTGAGCTAGCTTGTATTT
Locus tag: Shewana3_0099
Name: hutC
Funciton: histidine utilization repressor
Locus tag: Shewana3_0100
Name: hutU
Funciton: urocanate hydratase (EC 4.2.1.49)
Locus tag: Shewana3_0101
Name: hutH
Funciton: histidine ammonia-lyase (EC 4.3.1.3)
Shewana3_0099
hutC
histidine utilization repressor
Shewana3_0100
hutU
urocanate hydratase (EC 4.2.1.49)
Shewana3_0101
hutH
histidine ammonia-lyase (EC 4.3.1.3)
Position: -174
Score: 3.5
Sequence: TTAGTTGACTAATATCACTAAA
Locus tag: Shewana3_0617
Name: crp
Funciton: Cyclic AMP receptor protein Crp
Shewana3_0617
crp
Cyclic AMP receptor protein Crp
Position: -187
Score: 4.4
Sequence: TTTATTGATCTTTATCTCATTT
Position: -167
Score: 4.5
Sequence: TTTTGTGAATAGGCTAACAAAA
Locus tag: Shewana3_0812
Name: cydD
Funciton: Transport ATP-binding protein CydD
Locus tag: Shewana3_0813
Name: cydC
Funciton: Transport ATP-binding protein CydC
Locus tag: Shewana3_0814
Name: cyaB
Funciton: adenylate cyclase CyaB, putative
Shewana3_0812
cydD
Transport ATP-binding protein CydD
Shewana3_0813
cydC
Transport ATP-binding protein CydC
Shewana3_0814
cyaB
adenylate cyclase CyaB, putative
Position: -166
Score: 3.9
Sequence: AAATTAGATCTGCATCATGTTA
Position: -106
Score: 4.2
Sequence: ATTCTTGATATGCATCAAGAAT
Locus tag: Shewana3_1880
Name: hyaA
Funciton: Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Locus tag: Shewana3_1879
Name: hyaB
Funciton: Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Locus tag: Shewana3_1878
Name: hydC
Funciton: Ni,Fe-hydrogenase I cytochrome b subunit
Locus tag: Shewana3_1877
Name: hyaD
Funciton: Hydrogenase maturation protease (EC 3.4.24.-)
Locus tag: Shewana3_1876
Name: hyaE
Funciton: NiFe hydrogenase assembly chaperone, HyaE
Locus tag: Shewana3_1875
Name: hyaF
Funciton: NiFe hydrogenase assembly protein, HypF
Shewana3_1880
hyaA
Quinone-reactive Ni/Fe-hydrogenase small chain precursor (EC 1.12.5.1)
Shewana3_1879
hyaB
Quinone-reactive Ni/Fe-hydrogenase large chain (EC 1.12.5.1)
Shewana3_1878
hydC
Ni,Fe-hydrogenase I cytochrome b subunit
Shewana3_1877
hyaD
Hydrogenase maturation protease (EC 3.4.24.-)
Shewana3_1876
hyaE
NiFe hydrogenase assembly chaperone, HyaE
Shewana3_1875
hyaF
NiFe hydrogenase assembly protein, HypF
Position: -294
Score: 4.3
Sequence: AATAGTGATTTTTATTGCAAAT
Locus tag: Shewana3_3048
Name: SO1326
Funciton: COG1242: Predicted Fe-S oxidoreductase
Shewana3_3048
SO1326
COG1242: Predicted Fe-S oxidoreductase
Position: -197
Score: 5.1
Sequence: AAATGTGATTTTGCTCACGCTA
Locus tag: Shewana3_2778
Name: fahA
Funciton: Fumarylacetoacetate hydrolase family protein
Locus tag: Shewana3_2777
Name: maiA
Funciton: Maleylacetoacetate isomerase (EC 5.2.1.2)
Shewana3_2778
fahA
Fumarylacetoacetate hydrolase family protein
Shewana3_2777
maiA
Maleylacetoacetate isomerase (EC 5.2.1.2)
Position: -148
Score: 4.6
Sequence: TAGTGTGATCTTCTTATCAATT
Position: -92
Score: 3.9
Sequence: ATCTGTTATCTCAATCTAAAAA
Locus tag: Shewana3_2480
Name: hmgR
Funciton: Tyrosine degradation transcriptional regulator, LysR family
Shewana3_2480
hmgR
Tyrosine degradation transcriptional regulator, LysR family
Position: -107
Score: 3.8
Sequence: AATCTTGATTTGGATCAATAAG
Locus tag: Shewana3_2775
Name: ompW
Funciton: outer membrane protein W precursor
Shewana3_2775
ompW
outer membrane protein W precursor
Position: -73
Score: 3.8
Sequence: TAATGGGTTCTTGCTCAAACAT
Locus tag: Shewana3_1451
Name: putP
Funciton: proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Shewana3_1451
putP
proline/sodium symporter PutP (TC 2.A.21.2.1) @ propionate/sodium symporter
Position: -49
Score: 4.5
Sequence: TTTTTTGAGATGAATCACCTAA
Locus tag: Shewana3_3138
Name: mviN
Funciton: proposed peptidoglycan lipid II flippase MurJ
Locus tag: Shewana3_3137
Name: ribF
Funciton: riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
Locus tag: Shewana3_3136
Name: ileS
Funciton: isoleucyl-tRNA synthetase (EC 6.1.1.5)
Locus tag: Shewana3_3135
Name: lspA
Funciton: lipoprotein signal peptidase (EC 3.4.23.36)
Locus tag: Shewana3_3134
Name: fkbP-2
Funciton: FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
Locus tag: Shewana3_3133
Name: lytB
Funciton: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
Locus tag: Shewana3_3132
Name: pilV
Funciton: type IV fimbrial biogenesis protein PilV
Locus tag: Shewana3_3131
Name: pilW
Funciton: type IV fimbrial biogenesis protein PilW
Locus tag: Shewana3_3130
Name: pilX
Funciton: type IV fimbrial biogenesis protein PilX
Locus tag: Shewana3_3129
Name: pilY1
Funciton: type IV fimbrial biogenesis protein PilY1
Locus tag: Shewana3_3128
Name: pilE
Funciton: type IV pilus biogenesis protein PilE
Shewana3_3138
mviN
proposed peptidoglycan lipid II flippase MurJ
Shewana3_3137
ribF
riboflavin kinase (EC 2.7.1.26) / FMN adenylyltransferase (EC 2.7.7.2)
Shewana3_3136
ileS
isoleucyl-tRNA synthetase (EC 6.1.1.5)
Shewana3_3135
lspA
lipoprotein signal peptidase (EC 3.4.23.36)
Shewana3_3134
fkbP-2
FKBP-type peptidyl-prolyl cis-trans isomerase slpA (EC 5.2.1.8)
Shewana3_3133
lytB
4-hydroxy-3-methylbut-2-enyl diphosphate reductase (EC 1.17.1.2)
Shewana3_3132
pilV
type IV fimbrial biogenesis protein PilV
Shewana3_3131
pilW
type IV fimbrial biogenesis protein PilW
Shewana3_3130
pilX
type IV fimbrial biogenesis protein PilX
Shewana3_3129
pilY1
type IV fimbrial biogenesis protein PilY1
Shewana3_3128
pilE
type IV pilus biogenesis protein PilE
Position: -144
Score: 4.2
Sequence: TTTTGTGATCCTCTTCTAAGAG
Position: -77
Score: 3.9
Sequence: ATTTGTGAGCGATATTAATTTT
Locus tag: Shewana3_0401
Name: frdC1
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewana3_0402
Name: fdrC2
Funciton: Fumarate reductase cytochrome b subunit
Locus tag: Shewana3_0403
Name: frdA
Funciton: Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Locus tag: Shewana3_0404
Name: frdB
Funciton: Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Shewana3_0401
frdC1
Fumarate reductase cytochrome b subunit
Shewana3_0402
fdrC2
Fumarate reductase cytochrome b subunit
Shewana3_0403
frdA
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1)
Shewana3_0404
frdB
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1)
Position: -171
Score: 4.3
Sequence: TTTTTTGACATGGCTCAAGTAT
Locus tag: Shewana3_2107
Name: ccoN
Funciton: Cbb3-type cytochrome c oxidase, subunit I, CcoN
Locus tag: Shewana3_2108
Name: ccoO
Funciton: Cbb3-type cytochrome c oxidase, subunit II, CcoO
Locus tag: Shewana3_2109
Name: ccoQ
Funciton: Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Locus tag: Shewana3_2110
Name: ccoP
Funciton: Cbb3-type cytochrome c oxidase, subunit III, CcoP
Shewana3_2107
ccoN
Cbb3-type cytochrome c oxidase, subunit I, CcoN
Shewana3_2108
ccoO
Cbb3-type cytochrome c oxidase, subunit II, CcoO
Shewana3_2109
ccoQ
Cbb3-type cytochrome c oxidase, subunit IV, CcoQ
Shewana3_2110
ccoP
Cbb3-type cytochrome c oxidase, subunit III, CcoP
Position: -201
Score: 4.6
Sequence: AAAAGTGATTTATCTCACTAAA
Locus tag: Shewana3_3757
Name: SO4232
Funciton: long-chain fatty acid transport protein
Locus tag: Shewana3_3756
Name: glpK
Funciton: glycerol kinase (EC 2.7.1.30)
Shewana3_3757
SO4232
long-chain fatty acid transport protein
Shewana3_3756
glpK
glycerol kinase (EC 2.7.1.30)
Position: -75
Score: 4.5
Sequence: AACTGTGAGGGAGTTAACAAAA
Locus tag: Shewana3_2781
Name: phhA
Funciton: Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Locus tag: Shewana3_2780
Name: phhB
Funciton: Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Shewana3_2781
phhA
Phenylalanine-4-hydroxylase (EC 1.14.16.1)
Shewana3_2780
phhB
Pterin-4-alpha-carbinolamine dehydratase (EC 4.2.1.96)
Position: -156
Score: 4.2
Sequence: AAAGGTGACGAGTATAACAAAA
Locus tag: Shewana3_0799
Name: Sputcn32_0834
Funciton: ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Locus tag: Shewana3_0798
Name: asnC
Funciton: regulatory protein AsnC
Shewana3_0799
Sputcn32_0834
ribosomal large subunit pseudouridine synthase A (EC 4.2.1.70)
Shewana3_0798
asnC
regulatory protein AsnC
Position: -159
Score: 4.1
Sequence: TTTTATGATGATTTTCATATTG
Locus tag: Shewana3_0479
Name: SO4003
Funciton: response regulator
Shewana3_0479
SO4003
response regulator
Position: -78
Score: 5.1
Sequence: AAATGTGATTTAGATCTCGTTT
Locus tag: Shewana3_1133
Name: yfiA-2
Funciton: Ribosome hibernation protein YfiA
Shewana3_1133
yfiA-2
Ribosome hibernation protein YfiA
Position: -175
Score: 4.3
Sequence: ATCTGTGACAGTGCTCACCCAA
Locus tag: Shewana3_0273
Name: etfD
Funciton: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Shewana3_0273
etfD
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Position: -56
Score: 4.3
Sequence: AACTGTGATTAATCTCACTCTA
Locus tag: Shewana3_0902
Name: SO1064
Funciton: FOG: WD40 repeat
Locus tag: Shewana3_0901
Name: slyX
Funciton: protein SlyX
Locus tag: Shewana3_0900
Name: def-2
Funciton: peptide deformylase (EC 3.5.1.88)
Locus tag: Shewana3_0899
Name: SO1061
Funciton: TPR domain protein
Locus tag: Shewana3_0898
Name: spaP
Funciton: Putative lipoprotein
Locus tag: Shewana3_0897
Name: SO1059
Funciton: membrane alanine aminopeptidase N (EC 3.4.11.2)
Shewana3_0902
SO1064
FOG: WD40 repeat
Shewana3_0901
slyX
protein SlyX
Shewana3_0900
def-2
peptide deformylase (EC 3.5.1.88)
Shewana3_0899
SO1061
TPR domain protein
Shewana3_0898
spaP
Putative lipoprotein
Shewana3_0897
SO1059
membrane alanine aminopeptidase N (EC 3.4.11.2)
Position: -181
Score: 4.1
Sequence: TATTGTGAAATCGCGCAGAAAA
Locus tag: Shewana3_0441
Name: purH
Funciton: IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Locus tag: Shewana3_0440
Name: purD
Funciton: Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Shewana3_0441
purH
IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3)
Shewana3_0440
purD
Phosphoribosylamine--glycine ligase (EC 6.3.4.13)
Position: -133
Score: 4.4
Sequence: TTTGTTGATTGCGATCACAATT
Locus tag: Shewana3_2322
Name: SO2535
Funciton: Predicted glutamine amidotransferase
Shewana3_2322
SO2535
Predicted glutamine amidotransferase
Position: -151
Score: 4.4
Sequence: AACTGAGATCCTGATCACATAG
Locus tag: Shewana3_2668
Name: SO1787
Funciton: probable membrane protein YPO2362
Shewana3_2668
SO1787
probable membrane protein YPO2362
Position: -204
Score: 4
Sequence: AAACTTGCATCAGCTCACATAA
Locus tag: Shewana3_0861
Name: swp_4060
Funciton: phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
Shewana3_0861
swp_4060
phospholipase A1 precursor (EC 3.1.1.32, EC 3.1.1.4); outer membrane phospholipase A
Position: -278
Score: 3.8
Sequence: TCTATTGATCCTATTCACGAAT
Locus tag: Shewana3_3619
Name: psrA
Funciton: polysulfide reductase, subunit A
Locus tag: Shewana3_3618
Name: psrB
Funciton: polysulfide reductase, subunit B
Locus tag: Shewana3_3617
Name: psrC
Funciton: polysulfide reductase, subunit C
Shewana3_3619
psrA
polysulfide reductase, subunit A
Shewana3_3618
psrB
polysulfide reductase, subunit B
Shewana3_3617
psrC
polysulfide reductase, subunit C
Position: -125
Score: 4.2
Sequence: TTAAGTGATCTTGGCCACAATC
Locus tag: Shewana3_0666
Name: SO3967
Funciton: Molybdenum-binding periplasmic protein
Shewana3_0666
SO3967
Molybdenum-binding periplasmic protein
Position: -280
Score: 4.3
Sequence: TTATTAGATGGTCATCACACTT
Locus tag: Shewana3_2910
Name: Shewana3_2910
Funciton: putative membrane protein
Shewana3_2910
Shewana3_2910
putative membrane protein
Position: -201
Score: 3.9
Sequence: ATCTGCGAGATACCTCATATAT
Locus tag: Shewana3_2787
Name: mtrF
Funciton: decaheme cytochrome c MtrF
Shewana3_2787
mtrF
decaheme cytochrome c MtrF
Position: -121
Score: 3.9
Sequence: TAGCTTGATCGAAAACACAGTT
Locus tag: Shewana3_3197
Name: purT
Funciton: phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
Shewana3_3197
purT
phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
Position: -222
Score: 4
Sequence: GTTTGTGATCGCCATCACTAAC
Locus tag: Shewana3_2392
Name: hemB-1
Funciton: porphobilinogen synthase (EC 4.2.1.24)
Shewana3_2392
hemB-1
porphobilinogen synthase (EC 4.2.1.24)
Position: -94
Score: 4.3
Sequence: TTACATGATACGCTTCACAATG
Locus tag: Shewana3_3684
Name: kefA
Funciton: mechanosensitive ion channel
Shewana3_3684
kefA
mechanosensitive ion channel
Position: -118
Score: 4.3
Sequence: AAAAGCGATCTCGCTCAAAAAT
Locus tag: Shewana3_3290
Name: chaA
Funciton: calcium/proton antiporter
Shewana3_3290
chaA
calcium/proton antiporter
Position: -304
Score: 4.7
Sequence: TTTTGCGATCTGCCTCACAATC
Locus tag: Shewana3_3924
Name: Shewana3_3924
Funciton: methyl-accepting chemotaxis protein
Shewana3_3924
Shewana3_3924
methyl-accepting chemotaxis protein
Position: -295
Score: 4.4
Sequence: TTATGTGACAAAAATCTCAATG
Position: -172
Score: 4.3
Sequence: AAGTGAGAACAAGATCACACTT
Locus tag: Shewana3_2672
Name: mtrD
Funciton: periplasmic decaheme cytochrome c, MtrD
Locus tag: Shewana3_2673
Name: mtrE
Funciton: outer membrane protein, MtrE
Locus tag: Shewana3_2674
Name: mtrF
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrF
Locus tag: Shewana3_2675
Name: omcA
Funciton: surface localized decaheme cytochrome c lipoprotein, OmcA
Shewana3_2672
mtrD
periplasmic decaheme cytochrome c, MtrD
Shewana3_2673
mtrE
outer membrane protein, MtrE
Shewana3_2674
mtrF
surface localized decaheme cytochrome c lipoprotein, MtrF
Shewana3_2675
omcA
surface localized decaheme cytochrome c lipoprotein, OmcA
Position: -181
Score: 4.9
Sequence: CTGTGTGATGTGGTTCAAATTT
Locus tag: Shewana3_0739
Name: SO3890
Funciton: methyl-accepting chemotaxis protein
Shewana3_0739
SO3890
methyl-accepting chemotaxis protein
Position: -67
Score: 4.1
Sequence: AAATGTGTTAAACCACACAAAA
Locus tag: Shewana3_0733
Name: omp35
Funciton: outer membrane porin
Shewana3_0733
omp35
outer membrane porin
Position: -54
Score: 4.9
Sequence: AAACGTGATGCGGATCACTTAT
Locus tag: Shewana3_0083
Name: Sbal_4271
Funciton: membrane protein, HPP family
Shewana3_0083
Sbal_4271
membrane protein, HPP family
Position: -93
Score: 4.3
Sequence: TTAATTGACCTAGATCAAACTT
Locus tag: Shewana3_3675
Name: null
Funciton: hypothetical protein
Shewana3_3675
hypothetical protein
Position: -118
Score: 4.6
Sequence: TTTATTGATGTGTTTCACAGAT
Locus tag: Shewana3_3347
Name: cadC
Funciton: transcriptional regulator-related protein
Locus tag: Shewana3_3346
Name: null
Funciton: hypothetical protein
Shewana3_3347
cadC
transcriptional regulator-related protein
Shewana3_3346
hypothetical protein
Position: -157
Score: 4.5
Sequence: ATTTGTGATGTGAATCATTGTT
Locus tag: Shewana3_1640
Name: ydhD
Funciton: Probable monothiol glutaredoxin ydhD
Shewana3_1640
ydhD
Probable monothiol glutaredoxin ydhD
Position: -162
Score: 4.4
Sequence: TGGATTGATCCAGATCACAAAT
Locus tag: Shewana3_3045
Name: cyaC
Funciton: Adenylate cyclase (EC 4.6.1.1)
Shewana3_3045
cyaC
Adenylate cyclase (EC 4.6.1.1)
Position: -142
Score: 4.6
Sequence: TTCTTTGATAAGTCTCACATTT
Locus tag: Shewana3_1151
Name: yfiA-1
Funciton: ribosomal subunit interface protein
Shewana3_1151
yfiA-1
ribosomal subunit interface protein
Position: -236
Score: 4.1
Sequence: TTTTGTTAAGCAGATCATGTTT
Locus tag: Shewana3_3925
Name: SO4519
Funciton: sodium-dependent transporter
Shewana3_3925
SO4519
sodium-dependent transporter
Position: -189
Score: 3.5
Sequence: TAGAAAGATCCAAGTCACACAT
Locus tag: Shewana3_2676
Name: mtrC
Funciton: surface localized decaheme cytochrome c lipoprotein, MtrC
Locus tag: Shewana3_2677
Name: mtrA
Funciton: periplasmic decaheme cytochrome c, MtrA
Locus tag: Shewana3_2678
Name: mtrB
Funciton: outer membrane protein, MtrB
Shewana3_2676
mtrC
surface localized decaheme cytochrome c lipoprotein, MtrC
Shewana3_2677
mtrA
periplasmic decaheme cytochrome c, MtrA
Shewana3_2678
mtrB
outer membrane protein, MtrB
Position: -328
Score: 3.8
Sequence: GAATGTGATCTGTCTCGGCATT
Locus tag: Shewana3_0489
Name: mccA
Funciton: cytochrome c, putative
Shewana3_0489
mccA
cytochrome c, putative
Position: -384
Score: 4.3
Sequence: TACTGTGATCCCGTTAACCCAA
Position: -217
Score: 3.8
Sequence: TAATGTGCGCTGCCGCAAATTG
Locus tag: Shewana3_3344
Name: SO0939
Funciton: split-soret diheme cytochrome c
Locus tag: Shewana3_3345
Name: null
Funciton: hypothetical protein
Shewana3_3344
SO0939
split-soret diheme cytochrome c
Shewana3_3345
hypothetical protein
Position: -142
Score: 4
Sequence: AACTGGTATTTTGATCACAATT
Locus tag: Shewana3_0610
Name: astC
Funciton: Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Locus tag: Shewana3_0611
Name: astA
Funciton: Arginine N-succinyltransferase (EC 2.3.1.109)
Locus tag: Shewana3_0612
Name: astD
Funciton: Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Locus tag: Shewana3_0613
Name: SO0620
Funciton: FIG008480: hypothetical protein
Shewana3_0610
astC
Acetylornithine aminotransferase (EC 2.6.1.11) / N-succinyl-L,L-diaminopimelate aminotransferase (EC 2.6.1.17) / Succinylornithine transaminase (EC 2.6.1.81)
Shewana3_0611
astA
Arginine N-succinyltransferase (EC 2.3.1.109)
Shewana3_0612
astD
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71)
Shewana3_0613
SO0620
FIG008480: hypothetical protein
Position: -118
Score: 4.2
Sequence: GAAAGTGATACACCTCAAATAA
Locus tag: Shewana3_3688
Name: SO4142
Funciton: cytochrome c family protein
Locus tag: Shewana3_3689
Name: SO4143
Funciton: hypothetical protein
Locus tag: Shewana3_3690
Name: SO4144
Funciton: octaheme tetrathionate reductase
Shewana3_3688
SO4142
cytochrome c family protein
Shewana3_3689
SO4143
hypothetical protein
Shewana3_3690
SO4144
octaheme tetrathionate reductase
Position: -154
Score: 4.3
Sequence: AAAAGCGAACCAGTTCACAATT
Locus tag: Shewana3_4052
Name: null
Funciton: hypothetical protein
Shewana3_4052
hypothetical protein
Position: -142
Score: 4.1
Sequence: AATTGTTAAGTATTTCATATTG
Locus tag: Shewana3_0786
Name: SO3811
Funciton: lipoprotein, putative
Locus tag: Shewana3_0785
Name: ppiA
Funciton: peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Locus tag: Shewana3_0784
Name: SO3813
Funciton: hypothetical protein
Locus tag: Shewana3_0783
Name: ampG
Funciton: AmpG permease
Shewana3_0786
SO3811
lipoprotein, putative
Shewana3_0785
ppiA
peptidyl-prolyl cis-trans isomerase ppiA precursor (EC 5.2.1.8)
Shewana3_0784
SO3813
hypothetical protein
Shewana3_0783
ampG
AmpG permease
Position: -318
Score: 4.2
Sequence: AGAAGTGATCTTGATCAATTTT
Locus tag: Shewana3_3991
Name: SO4606
Funciton: cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Locus tag: Shewana3_3992
Name: SO4607
Funciton: cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Locus tag: Shewana3_3993
Name: coxG
Funciton: cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Locus tag: Shewana3_3994
Name: SO4609
Funciton: cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Shewana3_3991
SO4606
cytochrome c oxidase polypeptide II (EC 1.9.3.1)
Shewana3_3992
SO4607
cytochrome c oxidase polypeptide I (EC 1.9.3.1)
Shewana3_3993
coxG
cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1
Shewana3_3994
SO4609
cytochrome c oxidase polypeptide III (EC 1.9.3.1)
Position: -255
Score: 4.4
Sequence: CTTTGTGATACACTGCACAAAG
Locus tag: Shewana3_0025
Name: pepQ
Funciton: Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Locus tag: Shewana3_0026
Name: SO0023
Funciton: FIG000605: protein co-occurring with transport systems (COG1739)
Locus tag: Shewana3_0027
Name: trkH-1
Funciton: potassium uptake protein TrkH
Locus tag: Shewana3_0028
Name: hemG
Funciton: protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Shewana3_0025
pepQ
Xaa-Pro dipeptidase PepQ (EC 3.4.13.9)
Shewana3_0026
SO0023
FIG000605: protein co-occurring with transport systems (COG1739)
Shewana3_0027
trkH-1
potassium uptake protein TrkH
Shewana3_0028
hemG
protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-)
Position: -308
Score: 4.5
Sequence: AAATGTGATCTTGATCACTTGA
Locus tag: Shewana3_0735
Name: SO3895
Funciton: HesA/MoeB/ThiF family protein related to EC-YgdL
Shewana3_0735
SO3895
HesA/MoeB/ThiF family protein related to EC-YgdL
Position: -203
Score: 4.2
Sequence: TAGTGTGACTAGGGTCTCAGTA
Locus tag: Shewana3_1241
Name: cydA
Funciton: cytochrome d ubiquinol oxidase, subunit I, CydA
Locus tag: Shewana3_1242
Name: cydB
Funciton: cytochrome d ubiquinol oxidase, subunit II, CydB
Shewana3_1241
cydA
cytochrome d ubiquinol oxidase, subunit I, CydA
Shewana3_1242
cydB
cytochrome d ubiquinol oxidase, subunit II, CydB
Position: -278
Score: 4.8
Sequence: ATTTGTGACAAATTGCACATTA
Position: -205
Score: 4.1
Sequence: ATTCGTTAGGGATCTCACAGAT
Locus tag: Shewana3_1149
Name: SO3406
Funciton: FIG024006: iron uptake protein
Locus tag: Shewana3_1148
Name: SO3407
Funciton: FIG138928: iron-regulated membrane protein
Locus tag: Shewana3_1147
Name: SO3408
Funciton: FIG016502: iron uptake protein
Shewana3_1149
SO3406
FIG024006: iron uptake protein
Shewana3_1148
SO3407
FIG138928: iron-regulated membrane protein
Shewana3_1147
SO3408
FIG016502: iron uptake protein
Position: -159
Score: 5.1
Sequence: AAATGTGATTTGTATCAACTTT
Locus tag: Shewana3_3585
Name: SO4018
Funciton: hypothetical protein
Shewana3_3585
SO4018
hypothetical protein
Position: -263
Score: 4.1
Sequence: TCGAGTGACATGGATCACAGTT
Position: -181
Score: 4.2
Sequence: CAAAATGATCTAGATCATATTA
Locus tag: Shewana3_2904
Name: lldP
Funciton: L-lactate permease
Locus tag: Shewana3_2905
Name: dldD
Funciton: D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Shewana3_2904
lldP
L-lactate permease
Shewana3_2905
dldD
D-lactate dehydrogenase, Fe-S protein, FAD/FMN-containing
Position: -225
Score: 4.2
Sequence: ATTTAAGACCAATATCACATTT
Locus tag: Shewana3_2542
Name: SO2757
Funciton: Histidine permease YuiF
Shewana3_2542
SO2757
Histidine permease YuiF
Position: -72
Score: 4.8
Sequence: AATTGTGATCGCAATCAACAAA
Locus tag: Shewana3_2323
Name: fadE2
Funciton: Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Shewana3_2323
fadE2
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -46
Score: 4.3
Sequence: AAATTAGATCCATGTCACACAT
Locus tag: Shewana3_3509
Name: mdh
Funciton: malate dehydrogenase (EC 1.1.1.37)
Shewana3_3509
mdh
malate dehydrogenase (EC 1.1.1.37)
Position: -91
Score: 4.6
Sequence: AATATTGATCCATATCACGTTT
Locus tag: Shewana3_3681
Name: SO4134
Funciton: Protein of unknown function DUF465
Shewana3_3681
SO4134
Protein of unknown function DUF465
Position: -91
Score: 4.3
Sequence: AACAATGATTCACATCACAAAT
Locus tag: Shewana3_1639
Name: sodB
Funciton: superoxide dismutase [Fe] (EC 1.15.1.1)
Shewana3_1639
sodB
superoxide dismutase [Fe] (EC 1.15.1.1)
Position: -201
Score: 3.9
Sequence: ATCTGCGAGATACCTCATATAT
Locus tag: Shewana3_2787
Name: mtrF
Funciton: decaheme cytochrome c MtrF
Shewana3_2787
mtrF
decaheme cytochrome c MtrF
Position: -234
Score: 4.8
Sequence: TTAAGTGATCTGGCTCACTTAA
Locus tag: Shewana3_2536
Name: SO2753
Funciton: prolyl endopeptidase (EC 3.4.21.26)
Shewana3_2536
SO2753
prolyl endopeptidase (EC 3.4.21.26)
Position: -172
Score: 4.4
Sequence: AAACATGATCTGCTTAACAAAA
Locus tag: Shewana3_3926
Name: SO4520
Funciton: Oxygen-independent coproporphyrinogen III oxidase, putative
Shewana3_3926
SO4520
Oxygen-independent coproporphyrinogen III oxidase, putative
Position: -160
Score: 4.6
Sequence: AAGTGTGATCTGATTCTAACTT
Locus tag: Shewana3_1459
Name: SO3090
Funciton: MoxR-like ATPase in aerotolerance operon
Locus tag: Shewana3_1458
Name: SO3091
Funciton: Conserved hypothetical protein
Locus tag: Shewana3_1457
Name: null
Funciton: hypothetical protein
Locus tag: Shewana3_1456
Name: SO3093
Funciton: von Willebrand factor type A domain protein
Locus tag: Shewana3_1455
Name: SO3094
Funciton: TPR domain protein in aerotolerance operon
Locus tag: Shewana3_1454
Name: SO3095
Funciton: hypothetical protein
Shewana3_1459
SO3090
MoxR-like ATPase in aerotolerance operon
Shewana3_1458
SO3091
Conserved hypothetical protein
Shewana3_1457
hypothetical protein
Shewana3_1456
SO3093
von Willebrand factor type A domain protein
Shewana3_1455
SO3094
TPR domain protein in aerotolerance operon
Shewana3_1454
SO3095
hypothetical protein
Position: -309
Score: 4
Sequence: AAATGTCGCGTGGATCACATTT
Locus tag: Shewana3_3977
Name: cymA
Funciton: membrane anchored tetraheme cytochrome c, CymA
Shewana3_3977
cymA
membrane anchored tetraheme cytochrome c, CymA
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