Regulon of RutR in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type:	Transcription factor
TF locus tag:	Atu2384
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Regulog:	RutR - Rhizobiales
Statistics of regulated genes:
- Genes	23
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 44 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Rhizobiales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -164 Score: 4.7 Sequence: GTTTTTCCACCGGGTCAAAA Locus tag: Atu0126 Name: pntD Funciton: Predicted nucleoside ABC transporter, substrate-binding protein Locus tag: Atu0127 Name: pntA Funciton: Predicted nucleoside ABC transporter, ATP-binding protein Locus tag: Atu0128 Name: pntB Funciton: Predicted nucleoside ABC transporter, permease protein 1 Locus tag: Atu0129 Name: pntC Funciton: Predicted nucleoside ABC transporter, permease protein 2 Locus tag: Atu0130 Name: cdd Funciton: Cytidine deaminase (EC 3.5.4.5) Locus tag: Atu0131 Name: deoD Funciton: Purine nucleoside phosphorylase (EC 2.4.2.1) Locus tag: Atu0132 Name: deoC Funciton: Deoxyribose-phosphate aldolase (EC 4.1.2.4) Locus tag: Atu0133 Name: deoA Funciton: Thymidine phosphorylase (EC 2.4.2.4)
	Atu0126	pntD	Predicted nucleoside ABC transporter, substrate-binding protein
	Atu0127	pntA	Predicted nucleoside ABC transporter, ATP-binding protein
	Atu0128	pntB	Predicted nucleoside ABC transporter, permease protein 1
	Atu0129	pntC	Predicted nucleoside ABC transporter, permease protein 2
	Atu0130	cdd	Cytidine deaminase (EC 3.5.4.5)
	Atu0131	deoD	Purine nucleoside phosphorylase (EC 2.4.2.1)
	Atu0132	deoC	Deoxyribose-phosphate aldolase (EC 4.1.2.4)
	Atu0133	deoA	Thymidine phosphorylase (EC 2.4.2.4)
Position: -153 Score: 5.4 Sequence: AATTGACCGGCTGGTAAACA Locus tag: Atu2384 Name: rutR Funciton: Transcriptional regulator RutR of pyrimidine catabolism, TetR family
	Atu2384	rutR	Transcriptional regulator RutR of pyrimidine catabolism, TetR family
Position: -157 Score: 5.9 Sequence: TTTTTACCAAATGATAAAAA Position: -101 Score: 5.2 Sequence: TTTTATCCATTTGATAAAAT Locus tag: Atu2500 Name: rutA Funciton: Pyrimidine oxygenase Locus tag: Atu2499 Name: rutB Funciton: Peroxyureidoacrylate / ureidoacrylate amido hydrolase Locus tag: Atu2498 Name: rutC Funciton: Aminoacrylate peracid reductase Locus tag: Atu2497 Name: rutD Funciton: Aminoacrylate hydrolase Locus tag: Atu2496 Name: rutE Funciton: 3-hydroxy propionic acid dehydrogenase Locus tag: Atu2495 Name: rutF Funciton: Flavin reductase
	Atu2500	rutA	Pyrimidine oxygenase
	Atu2499	rutB	Peroxyureidoacrylate / ureidoacrylate amido hydrolase
	Atu2498	rutC	Aminoacrylate peracid reductase
	Atu2497	rutD	Aminoacrylate hydrolase
	Atu2496	rutE	3-hydroxy propionic acid dehydrogenase
	Atu2495	rutF	Flavin reductase
Position: -46 Score: 5.1 Sequence: TTTTTACTGAAAGGTAAAAT Locus tag: Atu3604 Name: hpt Funciton: Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)
	Atu3604	hpt	Hypoxanthine-guanine phosphoribosyltransferase (EC 2.4.2.8)
Position: -145 Score: 5.2 Sequence: TGTTTACCAGCCGGTCAATT Locus tag: Atu2385 Name: pydC Funciton: Beta-ureidopropionase (EC 3.5.1.6) Locus tag: Atu2386 Name: pydB Funciton: Dihydropyrimidinase (EC 3.5.2.2) Locus tag: Atu2387 Name: Atu2387 Funciton: NTP pyrophosphohydrolase, MutT family Locus tag: Atu2388 Name: pytA Funciton: Pyrimidine ABC transporter ATP-binding protein Locus tag: Atu2389 Name: pytB Funciton: Pyrimidine ABC transporter, permease protein 1 Locus tag: Atu2390 Name: pytC Funciton: Pyrimidine ABC transporter, permease protein 2 Locus tag: Atu2391 Name: pytD Funciton: Pyrimidine ABC transporter, substrate-binding protein
	Atu2385	pydC	Beta-ureidopropionase (EC 3.5.1.6)
	Atu2386	pydB	Dihydropyrimidinase (EC 3.5.2.2)
	Atu2387	Atu2387	NTP pyrophosphohydrolase, MutT family
	Atu2388	pytA	Pyrimidine ABC transporter ATP-binding protein
	Atu2389	pytB	Pyrimidine ABC transporter, permease protein 1
	Atu2390	pytC	Pyrimidine ABC transporter, permease protein 2
	Atu2391	pytD	Pyrimidine ABC transporter, substrate-binding protein

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of RutR in Agrobacterium tumefaciens str. C58 (Cereon)

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --