Regulon of RutR in Oceanobacter sp. RED65

Properties
Regulator type:	Transcription factor
TF locus tag:	RED65_04280
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Regulog:	RutR - Oceanospirillales/Alteromonadales
Statistics of regulated genes:
- Genes	11
- Operons	3
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 32 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Oceanospirillales/Alteromonadales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Regulated operons
	Locus Tag	Name	Function
Position: -35 Score: 4.9 Sequence: TCCTGATCAGATAGTCAATT Locus tag: RED65_11380 Name: add Funciton: Adenosine deaminase (EC 3.5.4.4)
	RED65_11380	add	Adenosine deaminase (EC 3.5.4.4)
Position: -127 Score: 4.4 Sequence: TTTTAACCCTCTGGTCAGGT Locus tag: RED65_12897 Name: pbuT Funciton: Xanthine/uracil permease
	RED65_12897	pbuT	Xanthine/uracil permease
Position: -230 Score: 5.4 Sequence: AACTGACCATATGGACAGAA Position: -125 Score: 5.7 Sequence: AGCTGACTAATTGGTCAGAT Locus tag: RED65_04290 Name: xdhA Funciton: Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4) Locus tag: RED65_04295 Name: xdhB Funciton: Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) Locus tag: RED65_04300 Name: xdhC Funciton: XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase) Locus tag: RED65_04305 Name: allC Funciton: Allantoicase (EC 3.5.3.4) Locus tag: RED65_04310 Name: pucL Funciton: Uricase (EC 1.7.3.3) Locus tag: RED65_04315 Name: pucM Funciton: Hydroxyisourate hydrolase (EC 3.5.2.17) Locus tag: RED65_04320 Name: allA Funciton: Ureidoglycolate hydrolase (EC 3.5.3.19) Locus tag: RED65_04325 Name: guaD Funciton: Guanine deaminase (EC 3.5.4.3) Locus tag: RED65_04330 Name: COG3748 Funciton: Predicted inner membrane protein
	RED65_04290	xdhA	Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4)
	RED65_04295	xdhB	Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4)
	RED65_04300	xdhC	XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase)
	RED65_04305	allC	Allantoicase (EC 3.5.3.4)
	RED65_04310	pucL	Uricase (EC 1.7.3.3)
	RED65_04315	pucM	Hydroxyisourate hydrolase (EC 3.5.2.17)
	RED65_04320	allA	Ureidoglycolate hydrolase (EC 3.5.3.19)
	RED65_04325	guaD	Guanine deaminase (EC 3.5.4.3)
	RED65_04330	COG3748	Predicted inner membrane protein

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD