Regulon of LiuR in Polaromonas naphthalenivorans CJ2

Properties
Regulator type:	Transcription factor
TF locus tag:	Pnap_0453
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes	12
- Operons	5
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 59 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Comamonadaceae
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -86 Score: 6.3 Sequence: TTTGACGTTTACGTAAAC Position: -80 Score: 5.1 Sequence: GTTTACGTAAACGTAAGA Locus tag: Pnap_0453 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Pnap_0453	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -74 Score: 6.6 Sequence: ATTGACGTTTACGTAAAC Position: -68 Score: 5.1 Sequence: GTTTACGTAAACGTCAAG Locus tag: Pnap_0454 Name: paaI Funciton: Phenylacetic acid degradation protein paaI Locus tag: Pnap_0455 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: Pnap_0456 Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1) Locus tag: Pnap_0457 Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) Locus tag: Pnap_0458 Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) Locus tag: Pnap_0459 Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Pnap_0454	paaI	Phenylacetic acid degradation protein paaI
	Pnap_0455	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Pnap_0456	cah	Carbonic anhydrase (EC 4.2.1.1)
	Pnap_0457	aceK	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
	Pnap_0458	ivdA	Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
	Pnap_0459	ivdC	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
Position: -81 Score: 6.6 Sequence: GTTGACGTTTACGTAAAC Position: -75 Score: 4.8 Sequence: GTTTACGTAAACGTAATA Locus tag: Pnap_3524 Name: mcm Funciton: Methylmalonyl-CoA mutase (EC 5.4.99.2)
	Pnap_3524	mcm	Methylmalonyl-CoA mutase (EC 5.4.99.2)
Position: -50 Score: 5.6 Sequence: GCTTACGTTTACGTCAAC Position: -44 Score: 5.1 Sequence: GTTTACGTCAACGTCAAT Locus tag: Pnap_1223 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: Pnap_1224 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit Locus tag: Pnap_1225 Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
	Pnap_1223	etfB	Electron transfer flavoprotein, beta subunit
	Pnap_1224	etfA	Electron transfer flavoprotein, alpha subunit
	Pnap_1225	acdH	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -86 Score: 6.1 Sequence: ATTGACGTTGACGTAAAC Position: -80 Score: 5.5 Sequence: GTTGACGTAAACGTCAAA Locus tag: Pnap_1609 Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Pnap_1609	paaH	3-hydroxyacyl-CoA dehydrogenase

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD