Regulon of LiuR in Delftia acidovorans SPH-1

Properties
Regulator type:	Transcription factor
TF locus tag:	Daci_5993
Regulator family:	MerR
Regulation mode:	repressor
Biological process:	Branched-chain amino acid degradation
Effector:
Regulog:	LiuR - Comamonadaceae
Statistics of regulated genes:
- Genes	15
- Operons	4
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 59 sites [see more]

Member of regulog collections

By trascription factor - LiuR
By taxonomy - Comamonadaceae
By TF family - MerR
By pathway - Branched-chain amino acid degradation

Regulated operons
	Locus Tag	Name	Function
Position: -37 Score: 6.6 Sequence: ATTGACGTTTACGTAAAC Position: -31 Score: 5 Sequence: GTTTACGTAAACGTAATT Locus tag: Daci_5992 Name: paaI Funciton: Phenylacetic acid degradation protein paaI Locus tag: Daci_5991 Name: liuA Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: Daci_5990 Name: cah Funciton: Carbonic anhydrase (EC 4.2.1.1) Locus tag: Daci_5989 Name: aceK Funciton: Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-) Locus tag: Daci_5988 Name: ivdA Funciton: Acetyl-CoA C-acyltransferase (EC 2.3.1.16) Locus tag: Daci_5987 Name: null Funciton: pyridoxamine 5'-phosphate oxidase-related, FMN-binding Locus tag: Daci_5986 Name: null Funciton: Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) Locus tag: Daci_5985 Name: ivdC Funciton: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2) Locus tag: Daci_5984 Name: Daci_5984 Funciton: Alpha/beta hydrolase fold (EC 3.8.1.5)
	Daci_5992	paaI	Phenylacetic acid degradation protein paaI
	Daci_5991	liuA	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Daci_5990	cah	Carbonic anhydrase (EC 4.2.1.1)
	Daci_5989	aceK	Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-)
	Daci_5988	ivdA	Acetyl-CoA C-acyltransferase (EC 2.3.1.16)
	Daci_5987		pyridoxamine 5'-phosphate oxidase-related, FMN-binding
	Daci_5986		Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
	Daci_5985	ivdC	Isovaleryl-CoA dehydrogenase (EC 1.3.99.10); Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.99.2)
	Daci_5984	Daci_5984	Alpha/beta hydrolase fold (EC 3.8.1.5)
Position: -46 Score: 6.4 Sequence: ATTGACGTTAACGTCAAC Locus tag: Daci_5993 Name: liuR Funciton: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
	Daci_5993	liuR	Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Position: -50 Score: 5.2 Sequence: ATTTCGGTTTACGTAAAC Position: -44 Score: 5.3 Sequence: GTTTACGTAAACGTCAAT Locus tag: Daci_2390 Name: etfB Funciton: Electron transfer flavoprotein, beta subunit Locus tag: Daci_2391 Name: etfA Funciton: Electron transfer flavoprotein, alpha subunit Locus tag: Daci_2392 Name: livK Funciton: Branched-chain amino acid ABC transport system, periplasmic binding component Locus tag: Daci_2393 Name: acdH Funciton: Acyl-CoA dehydrogenase (EC 1.3.99.3)
	Daci_2390	etfB	Electron transfer flavoprotein, beta subunit
	Daci_2391	etfA	Electron transfer flavoprotein, alpha subunit
	Daci_2392	livK	Branched-chain amino acid ABC transport system, periplasmic binding component
	Daci_2393	acdH	Acyl-CoA dehydrogenase (EC 1.3.99.3)
Position: -42 Score: 5.6 Sequence: AGTTACGTTTACGTCAAC Locus tag: Daci_4744 Name: paaH Funciton: 3-hydroxyacyl-CoA dehydrogenase
	Daci_4744	paaH	3-hydroxyacyl-CoA dehydrogenase

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