Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of LexA in Photobacterium profundum SS9

Properties
Regulator type: Transcription factor
TF locus tag: PBPRA0165
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Vibrionales
Statistics of regulated genes:
- Genes 16
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 186 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -68
Score: 5.4
Sequence: TGCTGGACATTTATCCAGTA
Locus tag: PBPRA0115
Name: rmuC
Funciton: DNA recombination protein RmuC
rmuC
DNA recombination protein RmuC

Position: -64
Score: 5.6
Sequence: TACTGTACGTAGATACAGTA
Position: -42
Score: 5.4
Sequence: TACTGTATGAAAACACAGGT
Locus tag: PBPRA0694
Name: recN
Funciton: DNA repair protein RecN
recN
DNA repair protein RecN

Position: -78
Score: 4.4
Sequence: TACTGTGTTTATATCCATGC
Locus tag: PBPRA0566
Name: xerD
Funciton: Site-specific recombinase XerD
Locus tag: PBPRA0567
Name: dsbC
Funciton: Thiol:disulfide interchange protein
Locus tag: PBPRA0568
Name: recJ
Funciton: Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
xerD
Site-specific recombinase XerD
dsbC
Thiol:disulfide interchange protein
recJ
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)

Position: -4
Score: 5.4
Sequence: AACTGTGCATACATACAGTG
Locus tag: PBPRB0973
Name: umuD
Funciton: DNA polymerase V, subunit UmuD
Locus tag: PBPRB0972
Name: umuC
Funciton: DNA polymerase V, subunit UmuC
umuD
DNA polymerase V, subunit UmuD
umuC
DNA polymerase V, subunit UmuC

Position: -64
Score: 6.1
Sequence: TACTGTATATAAAAACAGTT
Locus tag: PBPRA0832
Name: dinB
Funciton: DNA polymerase IV (EC 2.7.7.7)
dinB
DNA polymerase IV (EC 2.7.7.7)

Position: -64
Score: 5.7
Sequence: CACTGTATGAATAGACAGTA
Locus tag: PBPRA3068
Name: recA
Funciton: Recombinase A
recA
Recombinase A

Position: -85
Score: 5.3
Sequence: CACTGGATATACTCACAGTA
Position: -65
Score: 5.3
Sequence: GACTGTATAAACAAACAGGG
Locus tag: PBPRA0165
Name: lexA
Funciton: SOS-response repressor and protease LexA (EC 3.4.21.88)
lexA
SOS-response repressor and protease LexA (EC 3.4.21.88)

Position: -65
Score: 5
Sequence: TGCTGGATATCCATCCAGCA
Locus tag: PBPRA1116
Name: ruvA
Funciton: Holliday junction DNA helicase RuvA
Locus tag: PBPRA1117
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvA
Holliday junction DNA helicase RuvA
ruvB
Holliday junction DNA helicase RuvB

Position: -91
Score: 5.4
Sequence: TACTGTATCTTTATACAGCA
Locus tag: PBPRA3290
Name: uvrA
Funciton: Excinuclease ABC subunit A
uvrA
Excinuclease ABC subunit A

Position: -27
Score: 5.4
Sequence: CATTGTATAAATAACCAGTA
Locus tag: PBPRA3513
Name: uvrD
Funciton: ATP-dependent DNA helicase II
uvrD
ATP-dependent DNA helicase II

Position: -38
Score: 5.5
Sequence: TACTGTATAAGCAGCCAGTA
Locus tag: PBPRA3003
Name: yebG
Funciton: SOS regulon DNA damage-inducible protein
yebG
SOS regulon DNA damage-inducible protein

Position: -88
Score: 5.2
Sequence: AACTGTTGTTATATCCAGTA
Locus tag: PBPRA2590
Name: topB
Funciton: DNA topoisomerase III (EC 5.99.1.2)
topB
DNA topoisomerase III (EC 5.99.1.2)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD