Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of Irr in Agrobacterium tumefaciens str. C58 (Cereon)

Properties
Regulator type: Transcription factor
TF locus tag: Atu0153
Regulator family: FUR
Regulation mode: repressor
Biological process: Iron homeostasis
Effector: Heme
Regulog: Irr - Rhizobiales
Statistics of regulated genes:
- Genes 27
- Operons 12
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 122 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -130
Score: 5.3
Sequence: AATTCAGAACCGTTCTAAAAC
Locus tag: Atu2473
Name: fatB
Funciton: iron siderophore ABC transporter, periplasmic protein
Locus tag: Atu2474
Name: fatD
Funciton: iron siderophore ABC transporter, permease protein
Locus tag: Atu2475
Name: fatC
Funciton: iron siderophore ABC transporter, permease protein
Locus tag: Atu2476
Name: fatE
Funciton: iron siderophore ABC transporter, ATPase protein
Atu2473
fatB
iron siderophore ABC transporter, periplasmic protein
Atu2474
fatD
iron siderophore ABC transporter, permease protein
Atu2475
fatC
iron siderophore ABC transporter, permease protein
Atu2476
fatE
iron siderophore ABC transporter, ATPase protein
Position: -125
Score: 6.6
Sequence: AGTTTAGAATAATTCGAAACT
Locus tag: Atu1825
Name: sufS2
Funciton: Cysteine desulfurase (EC 2.8.1.7)
Locus tag: Atu1824
Name: sufB
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: Atu1823
Name: sufC
Funciton: ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Locus tag: Atu1822
Name: sufD
Funciton: ABC transporter involved in Fe-S cluster assembly, permease protein
Locus tag: Atu1821
Name: sufS1
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: Atu1820
Name: PF01883
Funciton: PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Locus tag: Atu1819
Name: sufA
Funciton: Iron binding protein SufA for iron-sulfur cluster assembly
Atu1825
sufS2
Cysteine desulfurase (EC 2.8.1.7)
Atu1824
sufB
ABC transporter involved in Fe-S cluster assembly, permease protein
Atu1823
sufC
ABC transporter involved in Fe-S cluster assembly, ATP-binding protein
Atu1822
sufD
ABC transporter involved in Fe-S cluster assembly, permease protein
Atu1821
sufS1
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Atu1820
PF01883
PaaD-like protein (DUF59) involved in Fe-S cluster assembly
Atu1819
sufA
Iron binding protein SufA for iron-sulfur cluster assembly
Position: -79
Score: 5.4
Sequence: TTGTTAGAATTATTCTAAAAC
Position: -32
Score: 6.2
Sequence: TATTTAGAATTATTCTAAAAA
Locus tag: Atu0251
Name: mbfA
Funciton: membrane-bound ferritin
Atu0251
mbfA
membrane-bound ferritin
Position: -107
Score: 5.5
Sequence: TGTTTCAAAGCATTCTAAACT
Locus tag: Atu0288
Name: iprA
Funciton: Iron-regulated protein A precursor
Atu0288
iprA
Iron-regulated protein A precursor
Position: -66
Score: 5.7
Sequence: TTTCTGGAATTGTTCTAAACT
Locus tag: Atu0201
Name: rirA
Funciton: Iron-responsive transcriptional regulator RirA, Rrf2 family
Atu0201
rirA
Iron-responsive transcriptional regulator RirA, Rrf2 family
Position: -117
Score: 5.2
Sequence: TTATTGGAATGGTTCAAAACA
Locus tag: Atu2613
Name: hemA
Funciton: 5-aminolevulinate synthase (EC 2.3.1.37)
Atu2613
hemA
5-aminolevulinate synthase (EC 2.3.1.37)
Position: -113
Score: 5.7
Sequence: AGTTTAGAACAATTCCAGAAA
Locus tag: Atu0202
Name: fbpA
Funciton: Ferric iron ABC transporter, periplasmic protein
Atu0202
fbpA
Ferric iron ABC transporter, periplasmic protein
Position: -168
Score: 5.6
Sequence: AGATTTGAATAATTCCAAGCT
Locus tag: Atu4022
Name: fhuA
Funciton: Ferric hydroxamate outer membrane receptor FhuA
Locus tag: Atu4023
Name: fhuD
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
Locus tag: Atu4024
Name: fhuB
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
Locus tag: Atu4025
Name: fhuC
Funciton: Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
Atu4022
fhuA
Ferric hydroxamate outer membrane receptor FhuA
Atu4023
fhuD
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), periplasmic substrate binding protein FhuD
Atu4024
fhuB
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), permease component FhuB
Atu4025
fhuC
Ferric hydroxamate ABC transporter (TC 3.A.1.14.3), ATP-binding protein FhuC
Position: -89
Score: 5.1
Sequence: AGTTAAGAATGGCTCTAAAAC
Locus tag: Atu3391
Name: irp6A
Funciton: Iron ABC transporter periplasmic protein
Locus tag: Atu3390
Name: irp6A
Funciton: Iron ABC transporter periplasmic protein
Locus tag: Atu3389
Name: irp6B
Funciton: Iron ABC transporter permease component
Locus tag: Atu3388
Name: irp6C
Funciton: Iron ABC transporter, ATP-binding protein
Atu3391
irp6A
Iron ABC transporter periplasmic protein
Atu3390
irp6A
Iron ABC transporter periplasmic protein
Atu3389
irp6B
Iron ABC transporter permease component
Atu3388
irp6C
Iron ABC transporter, ATP-binding protein
Position: -92
Score: 5.7
Sequence: AATTTAGAACTGTTCGAAAAC
Locus tag: Atu3916
Name: irgA
Funciton: iron-regulated outer membrane receptor irgA
Atu3916
irgA
iron-regulated outer membrane receptor irgA
Position: -39
Score: 5.4
Sequence: TGTTTAGAACAATTCTCAGAT
Locus tag: Atu1350
Name: fdx
Funciton: Ferredoxin, 2Fe-2S
Atu1350
fdx
Ferredoxin, 2Fe-2S
Position: -56
Score: 5.7
Sequence: TTTTTGGAAGAATTCTAAATT
Locus tag: Atu0351
Name: fssA
Funciton: putative nifU-like iron-sulphur cluster scaffold protein
Atu0351
fssA
putative nifU-like iron-sulphur cluster scaffold protein
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