Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of HexR in Vibrio harveyi ATCC BAA-1116

Properties
Regulator type: Transcription factor
TF locus tag: VIBHAR_02633
Regulator family: RpiR
Regulation mode: repressor (activator)
Biological process: Central carbohydrate metabolism
Effector: 2-keto-3-deoxy-6-phosphogluconate
Regulog: HexR - Vibrionales
Statistics of regulated genes:
- Genes 22
- Operons 16
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 190 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -91
Score: 5.2
Sequence: TGTAGTAAAATTACG
Locus tag: VIBHAR_00121
Name: gpmM
Funciton: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
VIBHAR_00121
gpmM
2,3-bisphosphoglycerate-independent phosphoglycerate mutase (EC 5.4.2.1)
Position: -142
Score: 4.9
Sequence: TGTAATTAATTTTCA
Position: 5
Score: 4.8
Sequence: TGTAGTTTTTTTACG
Locus tag: VIBHAR_00045
Name: ppc
Funciton: Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
VIBHAR_00045
ppc
Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
Position: -330
Score: 4.6
Sequence: AGAAATTTAATTACA
Position: -256
Score: 5.7
Sequence: TGTAATTAAATTACA
Locus tag: VIBHAR_01157
Name: pepD
Funciton: Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
VIBHAR_01157
pepD
Aminoacyl-histidine dipeptidase (Peptidase D) (EC 3.4.13.3)
Position: -305
Score: 5.5
Sequence: TGTAATTTAATTACG
Locus tag: VIBHAR_01041
Name: aceB
Funciton: Malate synthase (EC 2.3.3.9)
Locus tag: VIBHAR_01042
Name: aceA
Funciton: Isocitrate lyase (EC 4.1.3.1)
VIBHAR_01041
aceB
Malate synthase (EC 2.3.3.9)
VIBHAR_01042
aceA
Isocitrate lyase (EC 4.1.3.1)
Position: -244
Score: 4.5
Sequence: AGTAAATAAATTACG
Position: -150
Score: 4.3
Sequence: GGTTATTAATTTACA
Locus tag: VIBHAR_01621
Name: ygaW
Funciton: Putative inner membrane protein
VIBHAR_01621
ygaW
Putative inner membrane protein
Position: -509
Score: 5.3
Sequence: TGTAAATAAATTACA
Locus tag: VIBHAR_00928
Name: gltB
Funciton: Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
Locus tag: VIBHAR_00927
Name: gltD
Funciton: Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
VIBHAR_00928
gltB
Glutamate synthase [NADPH] large chain (EC 1.4.1.13)
VIBHAR_00927
gltD
Glutamate synthase [NADPH] small chain (EC 1.4.1.13)
Position: -55
Score: 5.1
Sequence: TGTAATTTTACTACC
Locus tag: VIBHAR_03049
Name: gapA
Funciton: NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
VIBHAR_03049
gapA
NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12)
Position: -251
Score: 4.5
Sequence: TGTAATTTAGTTCCA
Locus tag: VIBHAR_01575
Name: glgC
Funciton: Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
Locus tag: VIBHAR_01576
Name: glgA
Funciton: Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
VIBHAR_01575
glgC
Glucose-1-phosphate adenylyltransferase (EC 2.7.7.27)
VIBHAR_01576
glgA
Glycogen synthase, ADP-glucose transglucosylase (EC 2.4.1.21)
Position: -212
Score: 4.5
Sequence: TGTTATTAAGTTACA
Locus tag: VIBHAR_00834
Name: mtlA
Funciton: PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
Locus tag: VIBHAR_00833
Name: mtlD
Funciton: Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
Locus tag: VIBHAR_00832
Name: mtlR
Funciton: Mannitol operon repressor
VIBHAR_00834
mtlA
PTS system, mannitol-specific IIC component (EC 2.7.1.69) / PTS system, mannitol-specific IIB component (EC 2.7.1.69) / PTS system, mannitol-specific IIA component (EC 2.7.1.69)
VIBHAR_00833
mtlD
Mannitol-1-phosphate 5-dehydrogenase (EC 1.1.1.17)
VIBHAR_00832
mtlR
Mannitol operon repressor
Position: -290
Score: 4.4
Sequence: CGTAGTTATTTTTCA
Position: -225
Score: 4.5
Sequence: AGTATTTTTATTACA
Locus tag: VIBHAR_05733
Name: pntA
Funciton: NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
Locus tag: VIBHAR_05734
Name: pntB
Funciton: NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
VIBHAR_05733
pntA
NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2)
VIBHAR_05734
pntB
NAD(P) transhydrogenase subunit beta (EC 1.6.1.2)
Position: -138
Score: 4.7
Sequence: TGAAAAAAAATTACA
Locus tag: VIBHAR_00012
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
VIBHAR_00012
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)
Position: -138
Score: 4.9
Sequence: TGTAATAAAATAACA
Locus tag: VIBHAR_01544
Name: pflA
Funciton: Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
VIBHAR_01544
pflA
Pyruvate formate-lyase activating enzyme (EC 1.97.1.4)
Position: -35
Score: 5.1
Sequence: AGTAATTTAATTACA
Locus tag: VIBHAR_04820
Name: glgX
Funciton: Glycogen debranching enzyme (EC 3.2.1.-)
VIBHAR_04820
glgX
Glycogen debranching enzyme (EC 3.2.1.-)
Position: -249
Score: 5
Sequence: TGTAGTAAATTTACA
Locus tag: VIBHAR_00943
Name: grcA
Funciton: Autonomous glycyl radical cofactor
VIBHAR_00943
grcA
Autonomous glycyl radical cofactor
Position: -322
Score: 4.5
Sequence: TGTAATTTTGTTACT
Position: -171
Score: 4.1
Sequence: TGAAACTAAATTTCG
Locus tag: VIBHAR_02900
Name: ptsG
Funciton: PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
VIBHAR_02900
ptsG
PTS system, glucose-specific IIB component (EC 2.7.1.69) / PTS system, glucose-specific IIC component (EC 2.7.1.69)
Position: -73
Score: 4.4
Sequence: CGTAGATTTTTTACA
Locus tag: VIBHAR_00709
Name: tpiA
Funciton: Triosephosphate isomerase (EC 5.3.1.1)
VIBHAR_00709
tpiA
Triosephosphate isomerase (EC 5.3.1.1)
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