Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulon of CodY in Paenibacillus sp. JDR-2

Properties
Regulator type: Transcription factor
TF locus tag: Pjdr2_3461
Regulator family: CodY
Regulation mode:
Biological process: Amino acid metabolism
Effector: Guanosine triphosphate; Branched-chain amino acids
Regulog: CodY - Bacillales
Statistics of regulated genes:
- Genes 21
- Operons 6
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 445 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function
Position: -607
Score: 4.6
Sequence: AATTGACAGAATATT
Locus tag: Pjdr2_1025
Name: Pjdr2_1025
Funciton: Hypothetical protein
Locus tag: Pjdr2_1026
Name: leuA
Funciton: 2-isopropylmalate synthase (EC 2.3.3.13)
Pjdr2_1025
Pjdr2_1025
Hypothetical protein
Pjdr2_1026
leuA
2-isopropylmalate synthase (EC 2.3.3.13)
Position: -6
Score: 4.4
Sequence: AACTTTATGAAAATT
Locus tag: Pjdr2_4798
Name: metI
Funciton: Cystathionine gamma-synthase (EC 2.5.1.48)
Locus tag: Pjdr2_4797
Name: metC
Funciton: Cystathionine beta-lyase (EC 4.4.1.8)
Pjdr2_4798
metI
Cystathionine gamma-synthase (EC 2.5.1.48)
Pjdr2_4797
metC
Cystathionine beta-lyase (EC 4.4.1.8)
Position: -129
Score: 4.6
Sequence: AATATTTTAAAAATA
Locus tag: Pjdr2_0817
Name: suhB
Funciton: Inositol-1-monophosphatase (EC 3.1.3.25)
Pjdr2_0817
suhB
Inositol-1-monophosphatase (EC 3.1.3.25)
Position: -96
Score: 5.2
Sequence: AATTTTCAGATAATT
Locus tag: Pjdr2_0438
Name: ushA
Funciton: 5'-nucleotidase (EC 3.1.3.5)
Pjdr2_0438
ushA
5'-nucleotidase (EC 3.1.3.5)
Position: -131
Score: 4.8
Sequence: AATTTACAAAAAATT
Locus tag: Pjdr2_3723
Name: Pjdr2_3723
Funciton: Oligopeptide/dipeptide ABC transporter, periplasmic component
Locus tag: Pjdr2_3722
Name: Pjdr2_3722
Funciton: Oligopeptide/dipeptide ABC transporter, permease components
Locus tag: Pjdr2_3721
Name: Pjdr2_3721
Funciton: Oligopeptide/dipeptide ABC transporter, permease components
Locus tag: Pjdr2_3720
Name: null
Funciton: Oligopeptide/dipeptide ABC transporter, ATPase subunit
Locus tag: Pjdr2_3719
Name: Pjdr2_3719
Funciton: Oligopeptide/dipeptide ABC transporter, ATPase subunit
Locus tag: Pjdr2_3718
Name: Pjdr2_3718
Funciton: Hydrolase (HAD superfamily)-like protein
Locus tag: Pjdr2_3717
Name: Pjdr2_3717
Funciton: Transcriptional regulator, LacI family
Pjdr2_3723
Pjdr2_3723
Oligopeptide/dipeptide ABC transporter, periplasmic component
Pjdr2_3722
Pjdr2_3722
Oligopeptide/dipeptide ABC transporter, permease components
Pjdr2_3721
Pjdr2_3721
Oligopeptide/dipeptide ABC transporter, permease components
Pjdr2_3720
Oligopeptide/dipeptide ABC transporter, ATPase subunit
Pjdr2_3719
Pjdr2_3719
Oligopeptide/dipeptide ABC transporter, ATPase subunit
Pjdr2_3718
Pjdr2_3718
Hydrolase (HAD superfamily)-like protein
Pjdr2_3717
Pjdr2_3717
Transcriptional regulator, LacI family
Position: -199
Score: 4.7
Sequence: AATTGTGTGAAAATT
Position: -103
Score: 5.3
Sequence: AATATTCAGAAAATT
Locus tag: Pjdr2_6138
Name: crnA
Funciton: Creatininase (EC 3.5.2.10)
Locus tag: Pjdr2_6137
Name: null
Funciton: Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
Locus tag: Pjdr2_6136
Name: null
Funciton: FAD linked oxidase domain protein
Locus tag: Pjdr2_6135
Name: null
Funciton: Nitrate/sulfonate/bicarbonate ABC transporter permease
Locus tag: Pjdr2_6134
Name: null
Funciton: Amidohydrolase 3
Locus tag: Pjdr2_6133
Name: null
Funciton: Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Locus tag: Pjdr2_6132
Name: wrbA
Funciton: Flavoprotein WrbA
Locus tag: Pjdr2_6131
Name: codA
Funciton: Cytosine deaminase (EC 3.5.4.1)
Pjdr2_6138
crnA
Creatininase (EC 3.5.2.10)
Pjdr2_6137
Nitrate/sulfonate/bicarbonate ABC transporter ATP-binding protein
Pjdr2_6136
FAD linked oxidase domain protein
Pjdr2_6135
Nitrate/sulfonate/bicarbonate ABC transporter permease
Pjdr2_6134
Amidohydrolase 3
Pjdr2_6133
Nitrate/sulfonate/bicarbonate ABC transporter substrate-binding protein
Pjdr2_6132
wrbA
Flavoprotein WrbA
Pjdr2_6131
codA
Cytosine deaminase (EC 3.5.4.1)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise