Regulon of NtcA in Cyanothece sp. PCC 7425

Properties
Regulator type:	Transcription factor
TF locus tag:	Cyan7425_0755
Regulator family:	CRP
Regulation mode:	activator
Biological process:	Nitrogen assimilation
Effector:	2-oxoglutarate
Regulog:	NtcA - Cyanobacteria
Statistics of regulated genes:
- Genes	24
- Operons	15
Visualization:
	Allows to visualize regulon content in the context of metabolic pathways

Built upon 228 sites [see more]

Member of regulog collections

By taxonomy - Cyanobacteria
By TF family - CRP
By effector - 2-oxoglutarate
By pathway - Nitrogen assimilation

Regulated operons
	Locus Tag	Name	Function
Position: -228 Score: 4.4 Sequence: TGTATAACGTGATACA Locus tag: Cyan7425_0782 Name: amt1 Funciton: ammonium transporter
	Cyan7425_0782	amt1	ammonium transporter
Position: -128 Score: 4.3 Sequence: TGTAACATTTGTTATT Position: -71 Score: 4.1 Sequence: AGTATTGGTGGATACA Locus tag: Cyan7425_0729 Name: SYNPCC7002_A0076 Funciton: hypothetical protein
	Cyan7425_0729	SYNPCC7002_A0076	hypothetical protein
Position: -38 Score: 3.7 Sequence: AGTAGTTTAATAAACT Locus tag: Cyan7425_0833 Name: SYNPCC7002_A2395 Funciton: hypothetical protein
	Cyan7425_0833	SYNPCC7002_A2395	hypothetical protein
Position: -33 Score: 5.2 Sequence: TGTATCATAAGCTACA Locus tag: Cyan7425_0732 Name: cce_3797 Funciton: conserved hypothetical protein
	Cyan7425_0732	cce_3797	conserved hypothetical protein
Position: -221 Score: 4.9 Sequence: TGTAACTCATGATACA Locus tag: Cyan7425_1839 Name: glnA Funciton: glutamine synthetase, type I
	Cyan7425_1839	glnA	glutamine synthetase, type I
Position: -151 Score: 4.4 Sequence: AGTAGCTCGTGATACA Locus tag: Cyan7425_4042 Name: Cyan7425_4042 Funciton: hypothetical protein Locus tag: Cyan7425_4041 Name: glnN Funciton: glutamine synthetase type III
	Cyan7425_4042	Cyan7425_4042	hypothetical protein
	Cyan7425_4041	glnN	glutamine synthetase type III
Position: -123 Score: 4.5 Sequence: TGTAACTTAATATACC Locus tag: Cyan7425_4573 Name: nirA Funciton: Nitrite reductase, ferredoxin dependent Locus tag: Cyan7425_4572 Name: nrtA Funciton: Nitrate/nitrite ABC transporter, substrate-binding protein Locus tag: Cyan7425_4571 Name: nrtB Funciton: Nitrate/nitrite ABC transporter, permease protein Locus tag: Cyan7425_4570 Name: nrtC Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 1 Locus tag: Cyan7425_4569 Name: nrtD Funciton: Nitrate/nitrite ABC transporter, ATP-binding protein 2
	Cyan7425_4573	nirA	Nitrite reductase, ferredoxin dependent
	Cyan7425_4572	nrtA	Nitrate/nitrite ABC transporter, substrate-binding protein
	Cyan7425_4571	nrtB	Nitrate/nitrite ABC transporter, permease protein
	Cyan7425_4570	nrtC	Nitrate/nitrite ABC transporter, ATP-binding protein 1
	Cyan7425_4569	nrtD	Nitrate/nitrite ABC transporter, ATP-binding protein 2
Position: -82 Score: 4.1 Sequence: AGTAGCTAGAGTTACG Locus tag: Cyan7425_0851 Name: nrrA Funciton: Transcriptional regulator, OmpR family
	Cyan7425_0851	nrrA	Transcriptional regulator, OmpR family
Position: -173 Score: 4.8 Sequence: TGTATCCGATGATACA Locus tag: Cyan7425_0755 Name: ntcA Funciton: Global nitrogen transcription regulator, Crp family
	Cyan7425_0755	ntcA	Global nitrogen transcription regulator, Crp family
Position: -78 Score: 4.6 Sequence: TGTATCACTATCTACA Locus tag: Cyan7425_1599 Name: ntcB Funciton: Nitrogen assimilation transcriptional activator, LysR family
	Cyan7425_1599	ntcB	Nitrogen assimilation transcriptional activator, LysR family
Position: -33 Score: 5.2 Sequence: TGTATCATAAGCTACA Locus tag: Cyan7425_0732 Name: SYNPCC7002_A2101 Funciton: Conserved hypothetical protein
	Cyan7425_0732	SYNPCC7002_A2101	Conserved hypothetical protein
Position: -120 Score: 3.1 Sequence: TCTAACGTATTCTCCA Locus tag: Cyan7425_4369 Name: nifJ Funciton: Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
	Cyan7425_4369	nifJ	Pyruvate-flavodoxin oxidoreductase (EC 1.2.7.-)
Position: -148 Score: 3.7 Sequence: TGTATAATAGATCACA Locus tag: Cyan7425_2260 Name: urtA Funciton: Urea ABC transporter, substrate-binding protein Locus tag: Cyan7425_2259 Name: urtB Funciton: Urea ABC transporter, permease protein 1 Locus tag: Cyan7425_2258 Name: urtC Funciton: Urea ABC transporter, permease protein 2 Locus tag: Cyan7425_2257 Name: urtD Funciton: Urea ABC transporter, ATP-binding protein 1 Locus tag: Cyan7425_2256 Name: urtE Funciton: Urea ABC transporter, ATP-binding protein 2
	Cyan7425_2260	urtA	Urea ABC transporter, substrate-binding protein
	Cyan7425_2259	urtB	Urea ABC transporter, permease protein 1
	Cyan7425_2258	urtC	Urea ABC transporter, permease protein 2
	Cyan7425_2257	urtD	Urea ABC transporter, ATP-binding protein 1
	Cyan7425_2256	urtE	Urea ABC transporter, ATP-binding protein 2
Position: -158 Score: 4.7 Sequence: GGTATCATATAATACA Locus tag: Cyan7425_1393 Name: gifB Funciton: Glutamine synthetase inactivating factor IF17
	Cyan7425_1393	gifB	Glutamine synthetase inactivating factor IF17
Position: -281 Score: 4.9 Sequence: TGTATCATGAGTTACA Locus tag: Cyan7425_1838 Name: apcF Funciton: phycobilisome core component
	Cyan7425_1838	apcF	phycobilisome core component

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulon of NtcA in Cyanothece sp. PCC 7425

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --